Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006317.1

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Reverse (-)

4802 .. 6978

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006317.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggacgtattacctgacgttgtaatccatgaaatcctgaaatacctatctaccagacaagccgtccgggctagcattctctccaagcaatgggaacgtgtttggtcttcggtccccgtattagattttgacgaggatgagaaagagcaacttggtgatgatgatggtagctatcttagacacaaaaacttgtcagcaaaaattgaaatttcgagttcaagcctcaaagccttggaagttatcagttttgcggagcgccggactaggcttcatgttgaagctatgaatcttgaatcccttagagttggtagtaaagaggataaggggcggtcttgttcttggtacgacattgattttgcatcttgcgggcagcttaggaatttagagttgtttggtacaatctttaaaggtctcgttagtcagcatctgaaacgctttgttctgggccaatgcaagtctattaagaatgccataattgatactccaaatctaagatcattttggttcgatggtccgacagacaagtgtaccgtttgtgtcgatgctccaaagttgtccaagactacaatcataactggtgacgattggtggccttggaattattctatctgtacctttcttgcaaatttggcttcctcagaaaaagtgactctatatgcagagtatcctccggttctcatcatcactcctgaacaatatacttattggcgtccaccattacctagtgtcaagcatctggaggtaattataaagggccggaaccagatggctccgtttgaggttgccctgaatttgaaaaaaaaaaaacctcactgtgggatggcaactttaggggacgatcgaggtggtggtgttcaatttctgcgtagacagagcaatgttttgaagaccgtattgatcgatctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

302

Amino Acids

34.32

Weight (kDa)

8.38

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	868
AciI	CCGC	3 cut(s)	251, 328, 366
AcsI	RAATTY	4 cut(s)	207, 379, 625, 790
AcyI	GRCGYC	1 cut(s)	709
AfaI	GTAC	4 cut(s)	344, 397, 529, 613
AfiI	CCNNNNNNNGG	2 cut(s)	90, 815
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	7 cut(s)	206, 219, 278, 293, 796, 857, 886
AhdI	GACNNNNNGTC	1 cut(s)	62
AluBI	AGCT	3 cut(s)	171, 281, 373
AluI	AGCT	3 cut(s)	171, 281, 373
Alw26I	GTCTC	1 cut(s)	416
AlwNI	CAGNNNCTG	1 cut(s)	427
AoxI	GGCC	3 cut(s)	445, 590, 754
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	4 cut(s)	207, 379, 625, 790
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	4 cut(s)	112, 445, 512, 754
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	167, 590
AsuNHI	GCTAGC	1 cut(s)	71
AvaII	GGWCC	2 cut(s)	112, 512
BaeI	ACNNNNGTAYC	2 cut(s)	511, 544
BbsI	GAAGAC	2 cut(s)	99, 893
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	4 cut(s)	158, 503, 760, 814
BceAI	ACGGC	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	675
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	3 cut(s)	72, 264, 723
BfoI	RGCGCY	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	675
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	2 cut(s)	112, 512
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgT120I	GGNCC	4 cut(s)	112, 445, 512, 754
BmiI	GGNNCC	3 cut(s)	114, 761, 771
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	4 cut(s)	368, 433, 532, 742
BmtI	GCTAGC	1 cut(s)	75
BpiI	GAAGAC	2 cut(s)	99, 893
BpmI	CTGGAG	1 cut(s)	758
Bpu10I	CCTNAGC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	709
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	231, 593
BsaWI	WCCGGW	1 cut(s)	670
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 815
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	2 cut(s)	95, 883
BseCI	ATCGAT	1 cut(s)	900
BseDI	CCNNGG	2 cut(s)	231, 593
BseGI	GGATG	2 cut(s)	142, 825
BseLI	CCNNNNNNNGG	2 cut(s)	90, 815
BseMI	GCAATG	2 cut(s)	95, 883
BseMII	CTCAG	1 cut(s)	651
BseNI	ACTGG	1 cut(s)	580
BseXI	GCAGC	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	841
BshFI	GGCC	3 cut(s)	447, 592, 756
BshVI	ATCGAT	1 cut(s)	900
BsiEI	CGRYCG	1 cut(s)	841
BsiSI	CCGG	4 cut(s)	67, 259, 671, 757
BslFI	GGGAC	2 cut(s)	98, 848
BslI	CCNNNNNNNGG	2 cut(s)	90, 815
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	2 cut(s)	98, 848
BsmI	GAATGC	2 cut(s)	75, 472
BsnI	GGCC	3 cut(s)	447, 592, 756
Bso31I	GGTCTC	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	494, 838, 897, 901
BspACI	CCGC	3 cut(s)	251, 328, 366
BspANI	GGCC	3 cut(s)	447, 592, 756
BspCNI	CTCAG	1 cut(s)	650
BspDI	ATCGAT	1 cut(s)	900
BspLI	GGNNCC	3 cut(s)	114, 761, 771
BspOI	GCTAGC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	95, 883
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	2 cut(s)	231, 593
BssMI	GATC	4 cut(s)	494, 838, 897, 901
BssNI	GRCGYC	1 cut(s)	709
BssT1I	CCWWGG	2 cut(s)	231, 593
Bst4CI	ACNGT	3 cut(s)	532, 815, 892
BstACI	GRCGYC	1 cut(s)	709
BstC8I	GCNNGC	2 cut(s)	73, 368
BstDEI	CTNAG	5 cut(s)	176, 299, 374, 491, 637
BstF5I	GGATG	2 cut(s)	142, 825
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	4 cut(s)	497, 841, 900, 904
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	494, 838, 897, 901
BstMCI	CGRYCG	1 cut(s)	841
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 629
BstSCI	CCNGG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	2 cut(s)	99, 893
Bsu15I	ATCGAT	1 cut(s)	900
BsuI	GTATCC	1 cut(s)	675
BsuRI	GGCC	3 cut(s)	447, 592, 756
BsuTUI	ATCGAT	1 cut(s)	900
BtsCI	GGATG	2 cut(s)	142, 825
BtsIMutI	CAGTG	1 cut(s)	811
Cac8I	GCNNGC	2 cut(s)	73, 368
CaiI	CAGNNNCTG	1 cut(s)	427
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	4 cut(s)	112, 445, 512, 754
ClaI	ATCGAT	1 cut(s)	900
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	4 cut(s)	343, 396, 528, 612
CviAII	CATG	2 cut(s)	29, 272
CviQI	GTAC	4 cut(s)	343, 396, 528, 612
DdeI	CTNAG	5 cut(s)	176, 299, 374, 491, 637
DpnI	GATC	4 cut(s)	496, 840, 899, 903
DpnII	GATC	4 cut(s)	494, 838, 897, 901
DraI	TTTAAA	1 cut(s)	406
DriI	GACNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	231, 593
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	112, 512
EcoT14I	CCWWGG	2 cut(s)	231, 593
ErhI	CCWWGG	2 cut(s)	231, 593
FaeI	CATG	2 cut(s)	32, 275
FaiI	YATR	9 cut(s)	30, 273, 284, 473, 572, 655, 657, 699, 749
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	2 cut(s)	98, 848
FatI	CATG	2 cut(s)	28, 271
FauI	CCCGC	1 cut(s)	359
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	2 cut(s)	149, 832
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	3 cut(s)	72, 264, 723
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	758
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	3 cut(s)	447, 592, 756
HapII	CCGG	4 cut(s)	67, 259, 671, 757
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	709
Hin1II	CATG	2 cut(s)	32, 275
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	286, 293, 649
HpaII	CCGG	4 cut(s)	67, 259, 671, 757
HphI	GGTGA	2 cut(s)	167, 590
Hpy166II	GTNNAC	3 cut(s)	528, 713, 869
Hpy188I	TCNGA	3 cut(s)	429, 516, 640
Hpy188III	TCNNGA	4 cut(s)	37, 290, 689, 737
Hpy8I	GTNNAC	3 cut(s)	528, 713, 869
HpyCH4III	ACNGT	3 cut(s)	532, 815, 892
HpyCH4IV	ACGT	3 cut(s)	6, 18, 97
HpyCH4V	TGCA	4 cut(s)	359, 453, 623, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 629
HpyF3I	CTNAG	5 cut(s)	176, 299, 374, 491, 637
HpySE526I	ACGT	3 cut(s)	6, 18, 97
Hsp92I	GRCGYC	1 cut(s)	709
Hsp92II	CATG	2 cut(s)	32, 275
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	494, 838, 897, 901
LmnI	GCTCC	3 cut(s)	253, 550, 775
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	4 cut(s)	368, 433, 532, 742
MaeI	CTAG	3 cut(s)	72, 264, 723
MaeII	ACGT	3 cut(s)	6, 18, 97
MaeIII	GTNAC	2 cut(s)	578, 646
MalI	GATC	4 cut(s)	496, 840, 899, 903
MboI	GATC	4 cut(s)	494, 838, 897, 901
MboII	GAAGA	2 cut(s)	99, 898
MluCI	AATT	9 cut(s)	201, 207, 379, 474, 598, 625, 744, 790, 857
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	1 cut(s)	539
MnlI	CCTC	9 cut(s)	127, 233, 310, 646, 678, 733, 772, 819, 836
MseI	TTAA	2 cut(s)	405, 462
MspI	CCGG	4 cut(s)	67, 259, 671, 757
MspR9I	CCNGG	1 cut(s)	68
Mva1269I	GAATGC	2 cut(s)	75, 472
MwoI	GCNNNNNNNGC	2 cut(s)	68, 629
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	4 cut(s)	494, 838, 897, 901
NheI	GCTAGC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	32, 275
NlaIV	GGNNCC	3 cut(s)	114, 761, 771
NmuCI	GTSAC	2 cut(s)	578, 646
PctI	GAATGC	2 cut(s)	75, 472
PfeI	GAWTC	2 cut(s)	286, 293
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	372
Ple19I	CGATCG	1 cut(s)	841
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
PsiI	TTATAA	1 cut(s)	749
PspN4I	GGNNCC	3 cut(s)	114, 761, 771
PspPI	GGNCC	4 cut(s)	112, 445, 512, 754
PstNI	CAGNNNCTG	1 cut(s)	427
PvuI	CGATCG	1 cut(s)	841
RsaI	GTAC	4 cut(s)	344, 397, 529, 613
RsaNI	GTAC	4 cut(s)	343, 396, 528, 612
SaqAI	TTAA	2 cut(s)	405, 462
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	4 cut(s)	494, 838, 897, 901
Sau96I	GGNCC	4 cut(s)	112, 445, 512, 754
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	1 cut(s)	68
SfaNI	GCATC	4 cut(s)	368, 433, 532, 742
SinI	GGWCC	2 cut(s)	112, 512
Sse9I	AATT	9 cut(s)	201, 207, 379, 474, 598, 625, 744, 790, 857
SsiI	CCGC	3 cut(s)	251, 328, 366
SspMI	CTAG	3 cut(s)	72, 264, 723
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	231, 593
TaaI	ACNGT	3 cut(s)	532, 815, 892
TaiI	ACGT	3 cut(s)	9, 21, 100
TaqI	TCGA	5 cut(s)	212, 507, 540, 841, 900
TaqII	GACCGA	1 cut(s)	100
TasI	AATT	9 cut(s)	201, 207, 379, 474, 598, 625, 744, 790, 857
TfiI	GAWTC	2 cut(s)	286, 293
Tru1I	TTAA	2 cut(s)	405, 462
Tru9I	TTAA	2 cut(s)	405, 462
TscAI	CASTG	1 cut(s)	818
TseFI	GTSAC	2 cut(s)	578, 646
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	2 cut(s)	578, 646
TspDTI	ATGAA	3 cut(s)	45, 260, 299
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	1 cut(s)	818
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	112, 512
XapI	RAATTY	4 cut(s)	207, 379, 625, 790
XmiI	GTMKAC	1 cut(s)	868
XspI	CTAG	3 cut(s)	72, 264, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.