Rh2DG596200

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000687
Physical Location & Seq
Forward (+)
82906719 .. 82907458
740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG596200.1

Sequence Viewer

Length: 306 bp
ATGGATCCCATCAGAAGGATGCTTCAACTAAGAGATTTTCTTGGACAATTTGATTGCTCAAGAAAAGTGAGTCTACATGTTTCCGACGCTGAGACTGTTATCTTTGAAGAAGATATAAGGAAGACACCTTCACCATTACCAAATATCAAGCATCTCAAGGTAGAGTTAAGCACTGATACAACAGCAGTAACACATACTAAATTGATACACTCCTTGCTTTGGATGGCGCCCTCATCTATCAAGTTTCTATCAGTAAAACAAAATTCAGGGCTTCTCTTTGAATTTAAACAGAAAGATTGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

101

Amino Acids

11.6

Weight (kDa)

8.66

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 73
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 262, 281
AcyI GRCGYC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 15, 219
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 3 cut(s) 26, 107, 281
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 2 cut(s) 262, 281
AspLEI GCGC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 123
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 128
BccI CCATC 2 cut(s) 17, 217
BcoDI GTCTC 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 6, 228
BmsI GCATC 2 cut(s) 9, 160
BpiI GAAGAC 1 cut(s) 128
BpuEI CTTGAG 2 cut(s) 43, 140
BsaHI GRCGYC 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 219
BseGI GGATG 2 cut(s) 24, 228
BseLI CCNNNNNNNGG 2 cut(s) 15, 219
BseMII CTCAG 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 15, 219
BsmAI GTCTC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 4
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 6, 228
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 226
BssMI GATC 1 cut(s) 4
BssNI GRCGYC 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 29, 90
BstF5I GGATG 2 cut(s) 24, 228
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 4
BstNSI RCATGY 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsCI GGATG 2 cut(s) 24, 228
BtsIMutI CAGTG 1 cut(s) 171
CfoI GCGC 1 cut(s) 229
CseI GACGC 1 cut(s) 95
CviAII CATG 1 cut(s) 77
CviJI RGCY 1 cut(s) 271
CviKI_1 RGCY 1 cut(s) 271
DdeI CTNAG 2 cut(s) 29, 90
DinI GGCGCC 1 cut(s) 228
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraI TTTAAA 1 cut(s) 286
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
FaeI CATG 1 cut(s) 80
FaiI YATR 3 cut(s) 78, 116, 195
FatI CATG 1 cut(s) 76
FblI GTMKAC 1 cut(s) 73
FokI GGATG 2 cut(s) 31, 235
GlaI GCGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 230
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 1 cut(s) 70
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 14, 85
Hpy188III TCNNGA 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 9, 138
HpyCH4III ACNGT 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 29, 90
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 227
KasI GGCGCC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 1 cut(s) 252
LweI GCATC 2 cut(s) 9, 160
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 3 cut(s) 119, 122, 133
MflI RGATCY 1 cut(s) 4
MluCI AATT 4 cut(s) 47, 200, 262, 281
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 1 cut(s) 241
MseI TTAA 3 cut(s) 167, 285, 304
NarI GGCGCC 1 cut(s) 227
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 2 cut(s) 6, 228
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PleI GAGTC 1 cut(s) 78
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 78
PscI ACATGT 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 6, 228
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 3 cut(s) 167, 285, 304
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 79
SetI ASST 2 cut(s) 130, 162
SfaNI GCATC 2 cut(s) 9, 160
SfoI GGCGCC 1 cut(s) 228
SgeI CNNG 8 cut(s) 53, 72, 89, 160, 169, 226, 253, 279
SmlI CTYRAG 2 cut(s) 58, 155
SmoI CTYRAG 2 cut(s) 58, 155
Sse9I AATT 4 cut(s) 47, 200, 262, 281
SspDI GGCGCC 1 cut(s) 226
TaaI ACNGT 1 cut(s) 97
TasI AATT 4 cut(s) 47, 200, 262, 281
Tru1I TTAA 3 cut(s) 167, 285, 304
Tru9I TTAA 3 cut(s) 167, 285, 304
TscAI CASTG 1 cut(s) 178
TspRI CASTG 1 cut(s) 178
XapI RAATTY 2 cut(s) 262, 281
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.