Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Reverse (-)

59410618 .. 59411777

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0471000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTTAGGGATGTCGGTCTTCCCTCTTTTAAACCAGAATTTGAAAGATCTGCTTCTTGTTTTGCACCAACCTGCTGGCCTGAGCAGACGGTCATTAAGGAGGTCCCAGTTCTCTGGAGCAAGGAGCAAATCTGCGATGTTTTCAAAAGCTTTGATAGGAACGGTGACGGCAAACTGTCCAAGGATGAGCTCAAGGCAGCCTTTAGAAATCTCGGATCGCGTTGGAGCTCTTACAGAGCTAGGAGAGCATTACGCCATGTAGATGCCAACGGCGACGGCATCATATCTAATGAAGAGCTCAACGACCTTATCAAATATGCCCTAGAATGTGGTTATAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

114

Amino Acids

13.02

Weight (kDa)

7.64

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	40 - 68	6.5e-06	EF-hand domain pair
EF-hand_7	PF13499	41 - 104	1.2e-10	EF-hand domain pair
EF-hand_6	PF13405	44 - 72	8.5e-09	EF-hand domain
EF-hand_1	PF00036	46 - 70	2.8e-07	EF hand domain
EF-hand_5	PF13202	46 - 66	2.1e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	80
AccII	CGCG	1 cut(s)	220
AclWI	GGATC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	44, 145
AluBI	AGCT	6 cut(s)	150, 190, 228, 239, 298, 340
AluI	AGCT	6 cut(s)	150, 190, 228, 239, 298, 340
Alw21I	GWGCWC	3 cut(s)	192, 230, 300
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	103
BanII	GRGCYC	3 cut(s)	192, 230, 300
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	3 cut(s)	192, 230, 300
BbvI	GCAGC	1 cut(s)	209
BceAI	ACGGC	3 cut(s)	184, 286, 292
BfaI	CTAG	2 cut(s)	240, 323
BfuAI	ACCTGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	253, 288
BmuI	ACTGGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	16, 190
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	3 cut(s)	192, 230, 300
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	3 cut(s)	192, 230, 300
Bsp143I	GATC	2 cut(s)	47, 215
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	47, 215
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	91, 164, 177
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	16, 190
BstFNI	CGCG	1 cut(s)	220
BstKTI	GATC	2 cut(s)	50, 218
BstMBI	GATC	2 cut(s)	47, 215
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	47
BstXI	CCANNNNNNTGG	2 cut(s)	75, 114
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	16, 190
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	103
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	8 cut(s)	79, 150, 190, 200, 228, 239, 298, 340
CviKI_1	RGCY	8 cut(s)	79, 150, 190, 200, 228, 239, 298, 340
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	49, 217
DpnII	GATC	2 cut(s)	47, 215
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Ecl136II	GAGCTC	3 cut(s)	190, 228, 298
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	3 cut(s)	192, 230, 300
Eco47I	GGWCC	1 cut(s)	103
Eco53kI	GAGCTC	3 cut(s)	190, 228, 298
EcoICRI	GAGCTC	3 cut(s)	190, 228, 298
EcoO109I	RGGNCCY	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	3 cut(s)	192, 230, 300
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	260
FaiI	YATR	5 cut(s)	258, 284, 318, 336, 343
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 185, 217
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	23, 197
FriOI	GRGCYC	3 cut(s)	192, 230, 300
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	240, 323
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	260
HindIII	AAGCTT	1 cut(s)	148
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	278
HpyCH4III	ACNGT	3 cut(s)	91, 164, 177
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	47, 215
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	3 cut(s)	117, 124, 225
LpnPI	CCDG	6 cut(s)	48, 61, 85, 93, 100, 120
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	2 cut(s)	253, 288
MaeI	CTAG	2 cut(s)	240, 323
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	49, 217
MboI	GATC	2 cut(s)	47, 215
MboII	GAAGA	2 cut(s)	11, 305
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	3 cut(s)	192, 230, 300
MluCI	AATT	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	2 cut(s)	34, 94
MseI	TTAA	2 cut(s)	30, 96
MslI	CAYNNNNRTG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	2 cut(s)	47, 215
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	3 cut(s)	192, 230, 300
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	261
SacI	GAGCTC	3 cut(s)	192, 230, 300
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	30, 96
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	47, 215
Sau96I	GGNCC	1 cut(s)	103
SduI	GDGCHC	3 cut(s)	192, 230, 300
SetI	ASST	9 cut(s)	74, 105, 152, 192, 230, 241, 300, 309, 342
SfaNI	GCATC	2 cut(s)	253, 288
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	38
SspMI	CTAG	2 cut(s)	240, 323
SstI	GAGCTC	3 cut(s)	192, 230, 300
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	91, 164, 177
TaqII	GACCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	30, 96
Tru9I	TTAA	2 cut(s)	30, 96
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	38
XspI	CTAG	2 cut(s)	240, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.