FvH4_4g28371

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000687
Physical Location & Seq
Forward (+)
29055915 .. 29056746
832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28371.t1

Sequence Viewer

Length: 477 bp
ATGAATGTGGAAGTTGTTACTCCAAATCTGCATACTTTTCGCTTCATTGGTTCTAGAAGCATCTATTTACGCATGTTTGCTCCAAATTTATGTGAGGCTACAATCATACTTGACAAGAGCACAAGATGGGATACATATCATATTACCCTCAGGGATTTCCTTGCAAATTTTGACTGCTCAGGAAAATTATTCATCTATGCTCTTGGTTCTGAGGATATCCTCTTTTCAGAAGATACGAGGCAGACCTGTTTTACACCATTGCCTAGTCTCAAGCATTTGGACATAAAGATAATAGAGCGGAAAAGTTCCGCAATGGCAGTGACAGATTGTTACATGAGGGACTCGTTGAATTGGATGGCACCATCTCTGGAAATTCTATCTATAAACAAGATAAACAAGAAATGGAGTAAAAATTTCAACAAAGAGATTAATTCCTGTTTGCGATACCATTTCCACCCTGTGACAGGTGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

159

Amino Acids

18.31

Weight (kDa)

8.54

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 2 cut(s) 298, 309
AcsI RAATTY 4 cut(s) 85, 166, 372, 412
AdeI CACNNNGTG 1 cut(s) 460
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 2 cut(s) 349, 418
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 272
ApoI RAATTY 4 cut(s) 85, 166, 372, 412
AseI ATTAAT 1 cut(s) 429
AxyI CCTNAGG 1 cut(s) 149
BanI GGYRCC 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 122
BccI CCATC 3 cut(s) 120, 349, 370
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BciVI GTATCC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 54, 264
BfuI GTATCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 360
BmsI GCATC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse21I CCTNAGG 1 cut(s) 149
Bse3DI GCAATG 2 cut(s) 257, 318
Bse8I GATNNNNATC 1 cut(s) 135
BseGI GGATG 2 cut(s) 360, 476
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 2 cut(s) 257, 318
BseMII CTCAG 3 cut(s) 163, 192, 201
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 122
BspACI CCGC 2 cut(s) 298, 309
BspCNI CTCAG 3 cut(s) 162, 191, 202
BspLI GGNNCC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 257, 318
BstDEI CTNAG 3 cut(s) 149, 178, 210
BstENI CCTNNNNNAGG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 360, 476
BstMAI GTCTC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 149
BsuI GTATCC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 360, 476
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
CviAII CATG 2 cut(s) 73, 334
CviJI RGCY 1 cut(s) 98
CviKI_1 RGCY 1 cut(s) 98
DdeI CTNAG 3 cut(s) 149, 178, 210
DraIII CACNNNGTG 1 cut(s) 460
Eco32I GATATC 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoRV GATATC 1 cut(s) 217
FaeI CATG 2 cut(s) 76, 337
FaqI GGGAC 1 cut(s) 353
FatI CATG 2 cut(s) 72, 333
FokI GGATG 1 cut(s) 367
FspBI CTAG 2 cut(s) 54, 264
Hin1II CATG 2 cut(s) 76, 337
HinfI GANTC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 211, 229
Hpy188III TCNNGA 3 cut(s) 54, 180, 368
HpyCH4V TGCA 2 cut(s) 31, 164
HpyF3I CTNAG 3 cut(s) 149, 178, 210
Hsp92II CATG 2 cut(s) 76, 337
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 136, 165, 259, 353, 448, 450, 471
LweI GCATC 1 cut(s) 69
MaeI CTAG 2 cut(s) 54, 264
MaeIII GTNAC 4 cut(s) 16, 319, 329, 460
MbiI CCGCTC 1 cut(s) 298
MboII GAAGA 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 7 cut(s) 85, 166, 185, 349, 372, 412, 430
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 6 cut(s) 88, 158, 205, 230, 231, 330
MseI TTAA 1 cut(s) 429
NlaIII CATG 2 cut(s) 76, 337
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 319, 460
NspI RCATGY 1 cut(s) 76
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PshBI ATTAAT 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 429
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 122
SetI ASST 2 cut(s) 248, 469
SfaNI GCATC 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 7 cut(s) 85, 166, 185, 349, 372, 412, 430
SsiI CCGC 2 cut(s) 298, 309
SspMI CTAG 2 cut(s) 54, 264
TasI AATT 7 cut(s) 85, 166, 185, 349, 372, 412, 430
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 2 cut(s) 319, 460
Tsp45I GTSAC 2 cut(s) 319, 460
TspDTI ATGAA 3 cut(s) 17, 34, 181
TspRI CASTG 1 cut(s) 324
VspI ATTAAT 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 4 cut(s) 85, 166, 372, 412
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 76
XspI CTAG 2 cut(s) 54, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.