Rmu_sc0018381.1_g000002

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018381.1
OG0000687
Physical Location & Seq
Forward (+)
7437 .. 8741
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018381.1_g000002.1.cds

Sequence Viewer

Length: 1305 bp
atggtggtggacacatacacatcccaattacccgaacttgtcatcaaccaaatcttctctcatctttccaccaagtccgccattagggcaagcattctttctaaggaatgggcaagcgtgtgtttttcggttctcattttagatatcgatgaggatgaagggaagaagcaaattgctgatcacagggatcgacgtagaaagttccttaagttcttgagcaattgtttgaagagccgtgagaaagaaaagtacctggagaagttcaggctccgtatgacttattttggaggtgactgtgccataaataagtcattgagttttgctttggaaagaaacgttaaagagttggatatttgcttcaaaagagagaacgaggtcagaaaaggcagatactattgcttacagcagacagctctcaataatgcaaaatctttaaccattttgaagttggagtatttgaaaatagaagaggacagcatcgacactataagccttacgtctttgaaaactttgtctctaaaagctgtgaaattcatgactaacactggattctcacgcttatattcggggtgtccttccatcgagtatttgtcattaacttcgtgtcacggctgggatgttagactttcaagttcggggctcaaacacttggaaattctgtgttgcgaaatcaaacttaaagtcgaagcaacaaaccttgaatcctttaaattccgtggtgacaatggacttcgtcatcatatcattgacatgcgcaacttctacattgcctcttgtcaaaccctcagaagtcttgagttctctcatgcacactttgcaattggatggttcaaaggcctcgattcgagatttcctcttcttgagaggttggttttacatacatgcttcagctactcggggattatcaacatctttagccagcatctgaaaagctttgtgtttcatgaatgcggaaacattttgtctaatttttctatgactgctccaaatttatcggaggctacaatcacaattgaagagagaagagactatgatcgcctgagatattttcttggaaattttgattgctctaagaaaatacgtctacatgttaatgagactgaggtatgtatctttccggaggaaatgagaaagaaatactctccaccattacctagtctcaagcatcttgaggtagagatagatacttttacaacagtagtaactcattcggccctgatggactccatacggtggatggcaccgtctctggagtttctatccataaacagaattcattacatgtatgatagtagaattagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

434

Amino Acids

50.44

Weight (kDa)

8.71

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 1240
AccB7I CCANNNNNTGG 1 cut(s) 1233
AccI GTMKAC 1 cut(s) 1084
AccIII TCCGGA 1 cut(s) 1117
AciI CCGC 2 cut(s) 78, 951
AclI AACGTT 1 cut(s) 336
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 6 cut(s) 530, 654, 710, 988, 1057, 1272
AcuI CTGAAG 1 cut(s) 871
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 84, 1233
AflII CTTAAG 1 cut(s) 206
AflIII ACRYGT 2 cut(s) 1087, 1281
AgsI TTSAA 9 cut(s) 229, 361, 445, 460, 505, 630, 701, 832, 1016
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 4 cut(s) 413, 524, 891, 933
AluI AGCT 4 cut(s) 413, 524, 891, 933
Alw26I GTCTC 5 cut(s) 519, 1020, 1091, 1163, 1251
AlwI GGATC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 925
Ama87I CYCGRG 1 cut(s) 895
Aor13HI TCCGGA 1 cut(s) 1117
AoxI GGCC 2 cut(s) 835, 1212
ApoI RAATTY 6 cut(s) 530, 654, 710, 988, 1057, 1272
ArsI GACNNNNNNTTYG 2 cut(s) 666, 698
AspLEI GCGC 1 cut(s) 756
AspS9I GGNCC 1 cut(s) 1213
AsuHPI GGTGA 2 cut(s) 302, 731
AvaI CYCGRG 1 cut(s) 895
BanI GGYRCC 1 cut(s) 1240
BanII GRGCYC 1 cut(s) 642
BccI CCATC 4 cut(s) 587, 819, 1213, 1231
BceAI ACGGC 2 cut(s) 219, 625
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 5 cut(s) 519, 1020, 1091, 1163, 1251
BfaI CTAG 1 cut(s) 1155
BfrI CTTAAG 1 cut(s) 206
BglI GCCNNNNNGGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 895
BmgT120I GGNCC 1 cut(s) 1213
BmiI GGNNCC 2 cut(s) 269, 1242
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 3 cut(s) 486, 931, 1174
BplI GAGNNNNNCTC 2 cut(s) 838, 870
BpmI CTGGAG 2 cut(s) 275, 1271
BpuEI CTTGAG 5 cut(s) 235, 815, 881, 1145, 1190
Bsa29I ATCGAT 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 715
BsaWI WCCGGW 1 cut(s) 1117
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 1233
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 765
BseAI TCCGGA 1 cut(s) 1117
BseBI CCWGG 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 715
BseGI GGATG 5 cut(s) 20, 160, 622, 830, 1242
BseLI CCNNNNNNNGG 2 cut(s) 84, 1233
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 3 cut(s) 799, 1031, 1092
BseNI ACTGG 1 cut(s) 550
BseYI CCCAGC 1 cut(s) 612
BshFI GGCC 2 cut(s) 837, 1214
BshNI GGYRCC 1 cut(s) 1240
BshVI ATCGAT 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 1 cut(s) 1118
BslI CCNNNNNNNGG 2 cut(s) 84, 1233
BsmAI GTCTC 5 cut(s) 519, 1020, 1091, 1163, 1251
BsmBI CGTCTC 1 cut(s) 1251
BsmI GAATGC 2 cut(s) 93, 953
BsnI GGCC 2 cut(s) 837, 1214
BsoBI CYCGRG 1 cut(s) 895
Bsp1286I GDGCHC 1 cut(s) 642
Bsp13I TCCGGA 1 cut(s) 1117
Bsp143I GATC 3 cut(s) 178, 187, 1033
BspACI CCGC 2 cut(s) 78, 951
BspANI GGCC 2 cut(s) 837, 1214
BspCNI CTCAG 3 cut(s) 798, 1032, 1093
BspDI ATCGAT 1 cut(s) 147
BspEI TCCGGA 1 cut(s) 1117
BspHI TCATGA 2 cut(s) 534, 943
BspLI GGNNCC 2 cut(s) 269, 1242
BspPI GGATC 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 1240
BspTI CTTAAG 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 765
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 715
BssMI GATC 3 cut(s) 178, 187, 1033
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 4 cut(s) 296, 1198, 1233, 1245
Bst6I CTCTTC 5 cut(s) 224, 462, 861, 1011, 1018
BstAFI CTTAAG 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 815
BstC8I GCNNGC 3 cut(s) 91, 115, 920
BstDEI CTNAG 5 cut(s) 102, 785, 1040, 1071, 1101
BstDSI CCRYGG 1 cut(s) 715
BstF5I GGATG 5 cut(s) 20, 160, 622, 830, 1242
BstHHI GCGC 1 cut(s) 756
BstKTI GATC 3 cut(s) 181, 190, 1036
BstMAI GTCTC 5 cut(s) 519, 1020, 1091, 1163, 1251
BstMBI GATC 3 cut(s) 178, 187, 1033
BstMWI GCNNNNNNNGC 2 cut(s) 86, 815
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 4 cut(s) 754, 885, 1091, 1285
BstSCI CCNGG 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 2 cut(s) 837, 1214
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 715
BtsCI GGATG 5 cut(s) 20, 160, 622, 830, 1242
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 3 cut(s) 91, 115, 920
CaiI CAGNNNCTG 1 cut(s) 925
CciI TCATGA 2 cut(s) 534, 943
CfoI GCGC 1 cut(s) 756
Cfr13I GGNCC 1 cut(s) 1213
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 250
CviAII CATG 7 cut(s) 535, 751, 806, 882, 944, 1088, 1282
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 5 cut(s) 102, 785, 1040, 1071, 1101
DpnI GATC 3 cut(s) 180, 189, 1035
DpnII GATC 3 cut(s) 178, 187, 1033
DraI TTTAAA 1 cut(s) 709
Eam1104I CTCTTC 5 cut(s) 224, 462, 861, 1011, 1018
EarI CTCTTC 5 cut(s) 224, 462, 861, 1011, 1018
EciI GGCGGA 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 837
Eco24I GRGCYC 1 cut(s) 642
Eco32I GATATC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 871
Eco88I CYCGRG 1 cut(s) 895
EcoRI GAATTC 1 cut(s) 1272
EcoRII CCWGG 1 cut(s) 252
EcoRV GATATC 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 642
Esp3I CGTCTC 1 cut(s) 1251
FaeI CATG 7 cut(s) 538, 754, 809, 885, 947, 1091, 1285
FatI CATG 7 cut(s) 534, 750, 805, 881, 943, 1087, 1281
FbaI TGATCA 1 cut(s) 178
FblI GTMKAC 1 cut(s) 1084
FokI GGATG 5 cut(s) 7, 167, 629, 837, 1249
FriOI GRGCYC 1 cut(s) 642
FspBI CTAG 1 cut(s) 1155
FspI TGCGCA 1 cut(s) 755
GlaI GCGC 1 cut(s) 755
GsaI CCCAGC 1 cut(s) 616
GsuI CTGGAG 2 cut(s) 275, 1271
HaeIII GGCC 2 cut(s) 837, 1214
HapII CCGG 1 cut(s) 1118
HhaI GCGC 1 cut(s) 756
Hin1II CATG 7 cut(s) 538, 754, 809, 885, 947, 1091, 1285
Hin6I GCGC 1 cut(s) 754
HinP1I GCGC 1 cut(s) 754
HindIII AAGCTT 1 cut(s) 931
HinfI GANTC 4 cut(s) 549, 701, 842, 1223
HpaII CCGG 1 cut(s) 1118
HphI GGTGA 2 cut(s) 302, 731
Hpy166II GTNNAC 2 cut(s) 10, 1085
Hpy188I TCNGA 4 cut(s) 380, 788, 927, 997
Hpy188III TCNNGA 9 cut(s) 214, 535, 794, 846, 860, 944, 1118, 1169, 1250
Hpy8I GTNNAC 2 cut(s) 10, 1085
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 152, 585
HpyCH4III ACNGT 4 cut(s) 296, 1198, 1233, 1245
HpyCH4IV ACGT 4 cut(s) 193, 336, 497, 1081
HpyCH4V TGCA 3 cut(s) 425, 809, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 815
HpyF3I CTNAG 5 cut(s) 102, 785, 1040, 1071, 1101
HpySE526I ACGT 4 cut(s) 193, 336, 497, 1081
Hsp92II CATG 7 cut(s) 538, 754, 809, 885, 947, 1091, 1285
HspAI GCGC 1 cut(s) 754
Kpn2I TCCGGA 1 cut(s) 1117
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 178, 187, 1033
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 2 cut(s) 273, 988
LweI GCATC 3 cut(s) 486, 931, 1174
MaeI CTAG 1 cut(s) 1155
MaeII ACGT 4 cut(s) 193, 336, 497, 1081
MaeIII GTNAC 4 cut(s) 290, 605, 719, 1201
MalI GATC 3 cut(s) 180, 189, 1035
MboI GATC 3 cut(s) 178, 187, 1033
MboII GAAGA 7 cut(s) 46, 175, 241, 479, 848, 1028, 1035
MfeI CAATTG 3 cut(s) 220, 819, 1011
MhlI GDGCHC 1 cut(s) 642
MlyI GAGTC 1 cut(s) 1217
MmeI TCCRAC 2 cut(s) 327, 429
MroI TCCGGA 1 cut(s) 1117
MseI TTAA 8 cut(s) 207, 339, 434, 596, 678, 708, 1092, 1303
MslI CAYNNNNRTG 2 cut(s) 749, 1092
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 1118
MspR9I CCNGG 1 cut(s) 254
MunI CAATTG 3 cut(s) 220, 819, 1011
Mva1269I GAATGC 2 cut(s) 93, 953
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 86, 815
NdeII GATC 3 cut(s) 178, 187, 1033
NlaIII CATG 7 cut(s) 538, 754, 809, 885, 947, 1091, 1285
NlaIV GGNNCC 2 cut(s) 269, 1242
NmuCI GTSAC 3 cut(s) 290, 605, 719
NsbI TGCGCA 1 cut(s) 755
NspI RCATGY 4 cut(s) 754, 885, 1091, 1285
PagI TCATGA 2 cut(s) 534, 943
PceI AGGCCT 1 cut(s) 837
PciI ACATGT 2 cut(s) 1087, 1281
PciSI GCTCTTC 1 cut(s) 224
PctI GAATGC 2 cut(s) 93, 953
PfeI GAWTC 3 cut(s) 549, 701, 842
PflFI GACNNNGTC 1 cut(s) 732
PflMI CCANNNNNTGG 1 cut(s) 1233
PleI GAGTC 1 cut(s) 1217
PpsI GAGTC 1 cut(s) 1217
PscI ACATGT 2 cut(s) 1087, 1281
Psp1406I AACGTT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 612
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 269, 1242
PspPI GGNCC 1 cut(s) 1213
PstNI CAGNNNCTG 1 cut(s) 925
PsyI GACNNNGTC 1 cut(s) 732
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 749, 1092
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 8 cut(s) 207, 339, 434, 596, 678, 708, 1092, 1303
Sau3AI GATC 3 cut(s) 178, 187, 1033
Sau96I GGNCC 1 cut(s) 1213
SchI GAGTC 1 cut(s) 1217
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 642
SfaNI GCATC 3 cut(s) 486, 931, 1174
SmiMI CAYNNNNRTG 2 cut(s) 749, 1092
SmlI CTYRAG 6 cut(s) 206, 214, 794, 860, 1160, 1169
SmoI CTYRAG 6 cut(s) 206, 214, 794, 860, 1160, 1169
SseBI AGGCCT 1 cut(s) 837
SsiI CCGC 2 cut(s) 78, 951
SspMI CTAG 1 cut(s) 1155
StuI AGGCCT 1 cut(s) 837
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 4 cut(s) 296, 1198, 1233, 1245
TaiI ACGT 4 cut(s) 196, 339, 500, 1084
TaqI TCGA 7 cut(s) 147, 190, 480, 582, 684, 840, 845
TfiI GAWTC 3 cut(s) 549, 701, 842
Tru1I TTAA 8 cut(s) 207, 339, 434, 596, 678, 708, 1092, 1303
Tru9I TTAA 8 cut(s) 207, 339, 434, 596, 678, 708, 1092, 1303
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 3 cut(s) 290, 605, 719
Tsp45I GTSAC 3 cut(s) 290, 605, 719
TspDTI ATGAA 5 cut(s) 171, 523, 932, 960, 1265
TspGWI ACGGA 2 cut(s) 260, 704
TspRI CASTG 1 cut(s) 550
Tth111I GACNNNGTC 1 cut(s) 732
Van91I CCANNNNNTGG 1 cut(s) 1233
Vha464I CTTAAG 1 cut(s) 206
XapI RAATTY 6 cut(s) 530, 654, 710, 988, 1057, 1272
XceI RCATGY 4 cut(s) 754, 885, 1091, 1285
XcmI CCANNNNNNNNNTGG 2 cut(s) 445, 1234
XmiI GTMKAC 1 cut(s) 1084
XspI CTAG 1 cut(s) 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.