Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Forward (+)

5993457 .. 5994924

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGATTCAAATAAGTGTGTTGATGATTTGGAAGAGGGAGTAAAAGTAGCTGGTTTAAGAGCTGTATTTGAGACGGATTGGTTTTTACATTTGGAGGGGAAGAACATGAAGATGCTTAAGTTACAAGACATTGAAAATATATCTTTCAGAAACCTGGATGAAGTGGGTTTGGTAGTGGTGGGTTTGTGCTTTGTGTTGGTGGTGGTTATGAAATGGAATGGTGCTGCAACTCCAATGGAGGATGCCGGAGTAGTTGATGCAGCTCCAAATTTATGTGAGGCTACAATCATACTTGACAAGAGCACAAGATGGGATACATATCATATTACCCTCAGGGATTTCCTTGCAAATTTTGACTGCTCAGGAAAATTATCCATCTATGCTTTTGGTTCTGAGGATATCCTCTTTTCAGAAGATACGAGGCAGACCTGTTTTGCACCATTGCCTAGTCTCAAGCATTTGGACATGAAGATAATAGAGCGGAAAAGTTCTGCAATGACAGTGACAAATTGTTACATGAGGGACTCGTTGAATTGGATGGCACCATCTCTGGAAATTCTATCTATAAACAAGATAAACAAGAAATGGAGTAAAAATTTCAACAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

204

Amino Acids

23.0

Weight (kDa)

5.16

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	541
AccBSI	CCGCTC	1 cut(s)	481
AciI	CCGC	1 cut(s)	481
AcsI	RAATTY	4 cut(s)	268, 349, 555, 595
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	9, 134, 532, 601
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	50, 62, 263
AluI	AGCT	3 cut(s)	50, 62, 263
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	65, 455
ApeKI	GCWGC	2 cut(s)	224, 260
ApoI	RAATTY	4 cut(s)	268, 349, 555, 595
AxyI	CCTNAGG	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	211, 272
BccI	CCATC	4 cut(s)	303, 383, 532, 553
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	65, 455
BfaI	CTAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	225, 261
BlsI	GCNGC	2 cut(s)	226, 262
Bme1390I	CCNGG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	543
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	3 cut(s)	102, 232, 247
Bpu10I	CCTNAGC	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bse21I	CCTNAGG	1 cut(s)	332
Bse3DI	GCAATG	2 cut(s)	440, 501
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	155
BseGI	GGATG	3 cut(s)	163, 247, 543
BseJI	GATNNNNATC	1 cut(s)	318
BseMI	GCAATG	2 cut(s)	440, 501
BseMII	CTCAG	3 cut(s)	346, 375, 384
BseXI	GCAGC	2 cut(s)	211, 272
BshNI	GGYRCC	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	536
BsmAI	GTCTC	2 cut(s)	65, 455
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	481
BspCNI	CTCAG	3 cut(s)	345, 374, 385
BspLI	GGNNCC	1 cut(s)	543
BspT107I	GGYRCC	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	2 cut(s)	440, 501
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	116
BstDEI	CTNAG	3 cut(s)	332, 361, 393
BstF5I	GGATG	3 cut(s)	163, 247, 543
BstMAI	GTCTC	2 cut(s)	65, 455
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	211, 272
Bsu36I	CCTNAGG	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	307
BtsCI	GGATG	3 cut(s)	163, 247, 543
BtsIMutI	CAGTG	1 cut(s)	507
CviAII	CATG	3 cut(s)	106, 466, 517
CviJI	RGCY	4 cut(s)	50, 62, 263, 281
CviKI_1	RGCY	4 cut(s)	50, 62, 263, 281
DdeI	CTNAG	3 cut(s)	332, 361, 393
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	400
Eco81I	CCTNAGG	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	109, 469, 520
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	3 cut(s)	105, 465, 516
Fnu4HI	GCNGC	2 cut(s)	225, 261
FokI	GGATG	3 cut(s)	170, 254, 550
Fsp4HI	GCNGC	2 cut(s)	225, 261
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	2 cut(s)	225, 261
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	3 cut(s)	109, 469, 520
HinfI	GANTC	2 cut(s)	5, 524
HpaII	CCGG	1 cut(s)	246
Hpy188I	TCNGA	3 cut(s)	149, 394, 412
Hpy188III	TCNNGA	2 cut(s)	363, 551
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4V	TGCA	5 cut(s)	227, 260, 347, 437, 494
HpyF3I	CTNAG	3 cut(s)	332, 361, 393
Hsp92II	CATG	3 cut(s)	109, 469, 520
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	8 cut(s)	36, 140, 167, 259, 319, 348, 442, 536
Lsp1109I	GCAGC	2 cut(s)	211, 272
LweI	GCATC	3 cut(s)	102, 232, 247
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	120, 502, 512
MbiI	CCGCTC	1 cut(s)	481
MboII	GAAGA	5 cut(s)	44, 112, 121, 425, 481
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	7 cut(s)	268, 349, 368, 508, 532, 555, 595
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	9 cut(s)	28, 88, 232, 271, 341, 388, 413, 414, 513
MseI	TTAA	3 cut(s)	56, 117, 610
MslI	CAYNNNNRTG	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
NlaIII	CATG	3 cut(s)	109, 469, 520
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	226, 262
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	56, 117, 610
SatI	GCNGC	2 cut(s)	225, 261
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	5 cut(s)	52, 64, 156, 265, 431
SfaNI	GCATC	3 cut(s)	102, 232, 247
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	116, 452
SmoI	CTYRAG	2 cut(s)	116, 452
Sse9I	AATT	7 cut(s)	268, 349, 368, 508, 532, 555, 595
SsiI	CCGC	1 cut(s)	481
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	502
TasI	AATT	7 cut(s)	268, 349, 368, 508, 532, 555, 595
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	56, 117, 610
Tru9I	TTAA	3 cut(s)	56, 117, 610
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	2 cut(s)	224, 260
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	4 cut(s)	122, 174, 224, 482
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	507
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	4 cut(s)	268, 349, 555, 595
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.