Rroxscaffold_5G00381990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000687
Physical Location & Seq
Reverse (-)
61847944 .. 61856452
8509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381990.1

Sequence Viewer

Length: 204 bp
ATGATTCAAACTCTATGCATGGTTCTCATCATCACTCCTGAACAATATACTTATTGGCGTCCACCATTACCTAGTGTCAAGCATCTGGAGGTAATTATAAAGGGCCGGAACCAGATGGCTCCGGTAGCAGATTGTGCATTGAGGGACTCATTATACTGGATGGCACCTTCTGTGGAGACCCTCAGTAAACCAGAAATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.7

Weight (kDa)

6.53

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 58
AgsI TTSAA 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 170
AoxI GGCC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 163
BccI CCATC 2 cut(s) 109, 154
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 3 cut(s) 110, 120, 165
BmsI GCATC 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 161
BshFI GGCC 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 163
BsiSI CCGG 2 cut(s) 106, 122
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 105
Bso31I GGTCTC 1 cut(s) 170
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 195
BspLI GGNNCC 3 cut(s) 110, 120, 165
BspT107I GGYRCC 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 161
BssNI GRCGYC 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 170
BstMWI GCNNNNNNNGC 2 cut(s) 125, 134
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 1 cut(s) 47
CviAII CATG 1 cut(s) 19
CviJI RGCY 2 cut(s) 105, 119
CviKI_1 RGCY 2 cut(s) 105, 119
DdeI CTNAG 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 20
FaeI CATG 1 cut(s) 22
FaiI YATR 5 cut(s) 16, 20, 48, 98, 154
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 18
FokI GGATG 1 cut(s) 172
FspBI CTAG 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 106, 122
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 1 cut(s) 22
HinfI GANTC 2 cut(s) 4, 146
HpaII CCGG 2 cut(s) 106, 122
Hpy166II GTNNAC 2 cut(s) 62, 188
Hpy188III TCNNGA 2 cut(s) 38, 86
Hpy8I GTNNAC 2 cut(s) 62, 188
HpyAV CCTTC 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 18, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 134
HpyF3I CTNAG 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 22
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 51, 71, 119, 125, 135, 142
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 72
MluCI AATT 1 cut(s) 93
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 3 cut(s) 82, 135, 191
Mph1103I ATGCAT 1 cut(s) 20
MseI TTAA 1 cut(s) 202
MspI CCGG 2 cut(s) 106, 122
MwoI GCNNNNNNNGC 2 cut(s) 125, 134
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 3 cut(s) 110, 120, 165
NsiI ATGCAT 1 cut(s) 20
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 98
PspN4I GGNNCC 3 cut(s) 110, 120, 165
PspPI GGNCC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 140
SetI ASST 3 cut(s) 73, 93, 169
SfaNI GCATC 1 cut(s) 91
SgeI CNNG 9 cut(s) 31, 50, 84, 91, 98, 118, 124, 134, 169
Sse9I AATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 72
TasI AATT 1 cut(s) 93
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 202
Tru9I TTAA 1 cut(s) 202
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.