Rh2AG559400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000687
Physical Location & Seq
Reverse (-)
79019622 .. 79020723
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG559400.1

Sequence Viewer

Length: 768 bp
ATGCGCAAAAACTTCTACATTGCCTCTTGTCAAACCCTCAGAAGTCTTGAGTTCTCTCATGCACACTTTGCAATTGGATGGTTCAAAGGCCTCGATTCGAGATTTCCTCTTCTTGAGAGGTTGGTTTTACATACATGCTTCAGCTACTCGGGGATTATCAACATCTTTAGCCAGCATCTGAAAAGCTTTGTGTTTCATGAATGCGGAAACATTTTGTCTAATTTTTCTATGACTGCTCCAAATTTATCGGAGGCTACAATCACAATTGAAGAGAGAAGAGACTATGATCGCCTGAGAAATTTTCTTGGAAATTTTGATTGCTCTAAGAAAATACGTCTACATGTTAATGAGACTGAGGTATGTATCTTTCCGGAGGAAATGAGAAACAAATACTCTCCACCATTACCTAGTCTCAAGCATCTTGAGGTAGAGATAGATACTTTTACAACAGTAGTAACTCATTCGGCCTTGATGGACTCCTTACGGTGGATGGCACCGTCTCTGGAGTTTCTATCCATAAACAGAATTCATTACATTATTGAAGAAATTTCGGAGCTCAATATACCGAACCTTAGGGTTTCGTGCAGCAGGGCGGTGGCGTCGGTTCGATCCTGCCTGCCAGAGGACGTCTTACAGCGTCGTTCTCTTCGGGTCCGTGGACAGCGGCAAGGATTTCGATCCAGTGCTAGGTTTGAAGGCACGGCCGACGTTTGGTGGTGCTTTGTGACGTTGATCGGAGGGCATCGAATTGCAGGTGGCGGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

255

Amino Acids

29.38

Weight (kDa)

8.44

Isoelectric Point (pI)

68.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 743
AatII GACGTC 1 cut(s) 630
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 493
AccI GTMKAC 1 cut(s) 337
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 4 cut(s) 204, 593, 664, 759
AclWI GGATC 2 cut(s) 603, 672
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 5 cut(s) 241, 298, 310, 525, 546
AcuI CTGAAG 1 cut(s) 124
AcyI GRCGYC 2 cut(s) 599, 627
AfiI CCNNNNNNNGG 4 cut(s) 486, 622, 687, 711
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 4 cut(s) 85, 269, 542, 695
AluBI AGCT 3 cut(s) 144, 186, 556
AluI AGCT 3 cut(s) 144, 186, 556
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 4 cut(s) 273, 344, 416, 504
AlwI GGATC 2 cut(s) 603, 672
AlwNI CAGNNNCTG 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 148
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 3 cut(s) 88, 465, 702
ApeKI GCWGC 1 cut(s) 585
ApoI RAATTY 5 cut(s) 241, 298, 310, 525, 546
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 652
AvaI CYCGRG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 652
AxyI CCTNAGG 1 cut(s) 572
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 1 cut(s) 597
BccI CCATC 3 cut(s) 72, 466, 484
BceAI ACGGC 1 cut(s) 717
BcgI CGANNNNNNTGC 2 cut(s) 656, 690
BcoDI GTCTC 4 cut(s) 273, 344, 416, 504
BfaI CTAG 2 cut(s) 408, 687
BfuAI ACCTGC 1 cut(s) 743
BisI GCNGC 2 cut(s) 586, 665
BlsI GCNGC 2 cut(s) 587, 666
Bme18I GGWCC 1 cut(s) 652
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 2 cut(s) 495, 653
BmsI GCATC 3 cut(s) 184, 427, 751
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpmI CTGGAG 1 cut(s) 524
BpuEI CTTGAG 4 cut(s) 68, 134, 398, 443
BsaBI GATNNNNATC 1 cut(s) 676
BsaHI GRCGYC 2 cut(s) 599, 627
BsaJI CCNNGG 1 cut(s) 655
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 4 cut(s) 486, 622, 687, 711
Bse1I ACTGG 1 cut(s) 681
Bse21I CCTNAGG 1 cut(s) 572
Bse3DI GCAATG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 676
BseAI TCCGGA 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 2 cut(s) 83, 495
BseJI GATNNNNATC 1 cut(s) 676
BseLI CCNNNNNNNGG 4 cut(s) 486, 622, 687, 711
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 3 cut(s) 52, 284, 345
BseNI ACTGG 1 cut(s) 681
BseX3I CGGCCG 1 cut(s) 702
BseXI GCAGC 1 cut(s) 597
BsgI GTGCAG 1 cut(s) 604
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 3 cut(s) 90, 467, 704
BshNI GGYRCC 1 cut(s) 493
BsiEI CGRYCG 1 cut(s) 705
BsiHKAI GWGCWC 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 1 cut(s) 371
BslI CCNNNNNNNGG 4 cut(s) 486, 622, 687, 711
BsmAI GTCTC 4 cut(s) 273, 344, 416, 504
BsmBI CGTCTC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 3 cut(s) 90, 467, 704
BsoBI CYCGRG 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 558
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 4 cut(s) 286, 608, 677, 732
BspACI CCGC 4 cut(s) 204, 593, 664, 759
BspANI GGCC 3 cut(s) 90, 467, 704
BspCNI CTCAG 3 cut(s) 51, 285, 346
BspEI TCCGGA 1 cut(s) 370
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 495, 653
BspMI ACCTGC 1 cut(s) 743
BspPI GGATC 2 cut(s) 603, 672
BspT107I GGYRCC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 681
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 4 cut(s) 286, 608, 677, 732
BssNI GRCGYC 2 cut(s) 599, 627
Bst4CI ACNGT 3 cut(s) 451, 486, 498
Bst6I CTCTTC 4 cut(s) 114, 264, 271, 651
BstACI GRCGYC 2 cut(s) 599, 627
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 173, 617
BstDEI CTNAG 5 cut(s) 38, 293, 324, 354, 572
BstDSI CCRYGG 1 cut(s) 655
BstENI CCTNNNNNAGG 1 cut(s) 620
BstF5I GGATG 2 cut(s) 83, 495
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 289, 611, 680, 735
BstMAI GTCTC 4 cut(s) 273, 344, 416, 504
BstMBI GATC 4 cut(s) 286, 608, 677, 732
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 2 cut(s) 138, 344
BstV1I GCAGC 1 cut(s) 597
BstZI CGGCCG 1 cut(s) 702
Bsu36I CCTNAGG 1 cut(s) 572
BsuRI GGCC 3 cut(s) 90, 467, 704
BtgI CCRYGG 1 cut(s) 655
BtsCI GGATG 2 cut(s) 83, 495
BtsIMutI CAGTG 1 cut(s) 688
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 2 cut(s) 173, 617
CaiI CAGNNNCTG 1 cut(s) 178
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 652
CseI GACGC 2 cut(s) 588, 626
CviAII CATG 4 cut(s) 59, 135, 197, 341
CviJI RGCY 8 cut(s) 90, 144, 171, 186, 254, 467, 556, 704
CviKI_1 RGCY 8 cut(s) 90, 144, 171, 186, 254, 467, 556, 704
DdeI CTNAG 5 cut(s) 38, 293, 324, 354, 572
DpnI GATC 4 cut(s) 288, 610, 679, 734
DpnII GATC 4 cut(s) 286, 608, 677, 732
EaeI YGGCCR 1 cut(s) 702
EagI CGGCCG 1 cut(s) 702
Eam1104I CTCTTC 4 cut(s) 114, 264, 271, 651
EarI CTCTTC 4 cut(s) 114, 264, 271, 651
Ecl136II GAGCTC 1 cut(s) 556
EclXI CGGCCG 1 cut(s) 702
Eco147I AGGCCT 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 652
Eco52I CGGCCG 1 cut(s) 702
Eco53kI GAGCTC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 556
EcoNI CCTNNNNNAGG 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 525
EcoT38I GRGCYC 1 cut(s) 558
Esp3I CGTCTC 1 cut(s) 504
FaeI CATG 4 cut(s) 62, 138, 200, 344
FatI CATG 4 cut(s) 58, 134, 196, 340
FblI GTMKAC 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 586, 665
FokI GGATG 2 cut(s) 90, 502
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 2 cut(s) 586, 665
FspBI CTAG 2 cut(s) 408, 687
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 586, 665
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 3 cut(s) 90, 467, 704
HapII CCGG 1 cut(s) 371
HgaI GACGC 2 cut(s) 588, 626
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 2 cut(s) 599, 627
Hin1II CATG 4 cut(s) 62, 138, 200, 344
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 2 cut(s) 95, 476
HpaII CCGG 1 cut(s) 371
Hpy166II GTNNAC 2 cut(s) 338, 659
Hpy188I TCNGA 5 cut(s) 41, 180, 250, 553, 737
Hpy188III TCNNGA 7 cut(s) 47, 99, 113, 197, 371, 422, 503
Hpy8I GTNNAC 2 cut(s) 338, 659
Hpy99I CGWCG 3 cut(s) 604, 642, 710
HpyAV CCTTC 1 cut(s) 689
HpyCH4III ACNGT 3 cut(s) 451, 486, 498
HpyCH4IV ACGT 4 cut(s) 334, 627, 708, 728
HpyCH4V TGCA 4 cut(s) 62, 71, 585, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 5 cut(s) 38, 293, 324, 354, 572
HpySE526I ACGT 4 cut(s) 334, 627, 708, 728
Hsp92I GRCGYC 2 cut(s) 599, 627
Hsp92II CATG 4 cut(s) 62, 138, 200, 344
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 370
Kzo9I GATC 4 cut(s) 286, 608, 677, 732
LmnI GCTCC 2 cut(s) 241, 553
Lsp1109I GCAGC 1 cut(s) 597
LweI GCATC 3 cut(s) 184, 427, 751
MaeI CTAG 2 cut(s) 408, 687
MaeII ACGT 4 cut(s) 334, 627, 708, 728
MaeIII GTNAC 2 cut(s) 454, 724
MalI GATC 4 cut(s) 288, 610, 679, 734
MboI GATC 4 cut(s) 286, 608, 677, 732
MboII GAAGA 5 cut(s) 101, 281, 288, 554, 638
MfeI CAATTG 2 cut(s) 72, 264
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 9 cut(s) 72, 220, 241, 264, 298, 310, 525, 546, 747
MlyI GAGTC 1 cut(s) 470
MroI TCCGGA 1 cut(s) 370
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 664
MspI CCGG 1 cut(s) 371
MunI CAATTG 2 cut(s) 72, 264
Mva1269I GAATGC 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 4 cut(s) 286, 608, 677, 732
NlaIII CATG 4 cut(s) 62, 138, 200, 344
NlaIV GGNNCC 2 cut(s) 495, 653
NmuCI GTSAC 1 cut(s) 724
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 2 cut(s) 138, 344
PagI TCATGA 1 cut(s) 196
PaqCI CACCTGC 1 cut(s) 743
PceI AGGCCT 1 cut(s) 90
PciI ACATGT 1 cut(s) 340
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 587, 666
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PscI ACATGT 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 558
PspN4I GGNNCC 2 cut(s) 495, 653
PspPI GGNCC 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 558
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 2 cut(s) 586, 665
Sau3AI GATC 4 cut(s) 286, 608, 677, 732
Sau96I GGNCC 1 cut(s) 652
SchI GAGTC 1 cut(s) 470
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 3 cut(s) 184, 427, 751
SinI GGWCC 1 cut(s) 652
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 4 cut(s) 47, 113, 413, 422
SmoI CTYRAG 4 cut(s) 47, 113, 413, 422
Sse9I AATT 9 cut(s) 72, 220, 241, 264, 298, 310, 525, 546, 747
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 4 cut(s) 204, 593, 664, 759
SspMI CTAG 2 cut(s) 408, 687
SstI GAGCTC 1 cut(s) 558
StuI AGGCCT 1 cut(s) 90
TaaI ACNGT 3 cut(s) 451, 486, 498
TaiI ACGT 4 cut(s) 337, 630, 711, 731
TaqI TCGA 5 cut(s) 93, 98, 607, 676, 745
TasI AATT 9 cut(s) 72, 220, 241, 264, 298, 310, 525, 546, 747
TauI GCSGC 1 cut(s) 667
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 1 cut(s) 585
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 3 cut(s) 185, 213, 518
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 1 cut(s) 688
VpaK11BI GGWCC 1 cut(s) 652
XagI CCTNNNNNAGG 1 cut(s) 620
XapI RAATTY 5 cut(s) 241, 298, 310, 525, 546
XceI RCATGY 2 cut(s) 138, 344
XmiI GTMKAC 1 cut(s) 337
XspI CTAG 2 cut(s) 408, 687
ZraI GACGTC 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.