Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Forward (+)

31445247 .. 31445974

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g39830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATTCAAATAAGTGTGTTGATGATTTGGAAGAGGGAGTAAAAGTAGCTGGTTTAAGAGCTGTATTTGAGACGGATTGGTTTTTACATTTGGAGGGGAAGAACATGAAGACGCTTAAGTTACAAAACATTGAAGATAAATCTTACAGAAACCTGGATGAAGTGGGTTTGGTAGTGGTGGGTTTGTGCTTTGTGTTGGTGGTGGTGGTGGTTATGAAATGGAATGGTGCTGCAACTCCAATGGAGGATGCCGGAGTAGTTGATGCAGCTCCAAATTTATGTGAGGCTACGATCATACTTGACAAGAGCACAAGATGGGATACATATCATATTACCCTCAGGGATTTCCTTGCAAATTTTGACTGCTCAGGAAAATTATCCATCTATCCTTTTGGTTTTGAGGATATCCTCTTTTCAGAAGATACGAGGCAGACCTGTTTTGCACCATTGCCTAGTCTCAAGCATTTGGACATGAAGATAATAGACCGGAAAAGTTCCGCAATGGCAGTGACAAATTGTTACACGAGGGACTCGTTGAATTGGATGGCACCATCTCTGGAAATTCTATCTATAAACAAGATAAACAAGAAATGGAGTAAAAATTTCAACAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

206

Amino Acids

23.24

Weight (kDa)

5.29

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	547
AciI	CCGC	1 cut(s)	498
AcsI	RAATTY	4 cut(s)	274, 355, 561, 601
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	9, 134, 538, 607
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	50, 62, 269
AluI	AGCT	3 cut(s)	50, 62, 269
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	65, 461
ApeKI	GCWGC	2 cut(s)	230, 266
ApoI	RAATTY	4 cut(s)	274, 355, 561, 601
AxyI	CCTNAGG	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	547
BauI	CACGAG	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	217, 278
BccI	CCATC	4 cut(s)	309, 389, 538, 559
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	65, 461
BfaI	CTAG	1 cut(s)	453
BfrI	CTTAAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	231, 267
BlsI	GCNGC	2 cut(s)	232, 268
Bme1390I	CCNGG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	238, 253
BpiI	GAAGAC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bse21I	CCTNAGG	1 cut(s)	338
Bse3DI	GCAATG	2 cut(s)	446, 507
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	155
BseGI	GGATG	3 cut(s)	163, 253, 549
BseJI	GATNNNNATC	1 cut(s)	324
BseMI	GCAATG	2 cut(s)	446, 507
BseMII	CTCAG	2 cut(s)	352, 381
BseXI	GCAGC	2 cut(s)	217, 278
BshNI	GGYRCC	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	252, 487
BslFI	GGGAC	1 cut(s)	542
BsmAI	GTCTC	2 cut(s)	65, 461
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	498
BspCNI	CTCAG	2 cut(s)	351, 380
BspLI	GGNNCC	1 cut(s)	549
BspT107I	GGYRCC	1 cut(s)	547
BspTI	CTTAAG	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	446, 507
BssMI	GATC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	523
Bst2BI	CACGAG	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	338, 367
BstF5I	GGATG	3 cut(s)	163, 253, 549
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	65, 461
BstMBI	GATC	1 cut(s)	291
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	217, 278
BstV2I	GAAGAC	1 cut(s)	116
Bsu36I	CCTNAGG	1 cut(s)	338
BsuI	GTATCC	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	163, 253, 549
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	513
CseI	GACGC	1 cut(s)	121
CviAII	CATG	2 cut(s)	106, 472
CviJI	RGCY	4 cut(s)	50, 62, 269, 287
CviKI_1	RGCY	4 cut(s)	50, 62, 269, 287
DdeI	CTNAG	2 cut(s)	338, 367
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	109, 475
FaiI	YATR	8 cut(s)	107, 215, 280, 296, 325, 330, 473, 572
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	2 cut(s)	105, 471
Fnu4HI	GCNGC	2 cut(s)	231, 267
FokI	GGATG	3 cut(s)	170, 260, 556
Fsp4HI	GCNGC	2 cut(s)	231, 267
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	2 cut(s)	231, 267
HapII	CCGG	2 cut(s)	252, 487
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	109, 475
HinfI	GANTC	2 cut(s)	5, 530
HpaII	CCGG	2 cut(s)	252, 487
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	2 cut(s)	369, 557
HpyCH4V	TGCA	4 cut(s)	233, 266, 353, 443
HpyF3I	CTNAG	2 cut(s)	338, 367
Hsp92II	CATG	2 cut(s)	109, 475
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	36, 140, 167, 265, 325, 354, 448, 500, 542
Lsp1109I	GCAGC	2 cut(s)	217, 278
LweI	GCATC	2 cut(s)	238, 253
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	3 cut(s)	120, 508, 518
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	6 cut(s)	44, 112, 121, 146, 431, 487
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	7 cut(s)	274, 355, 374, 514, 538, 561, 601
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	9 cut(s)	28, 88, 238, 277, 347, 394, 419, 420, 519
MseI	TTAA	3 cut(s)	56, 117, 616
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	2 cut(s)	252, 487
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	109, 475
NlaIV	GGNNCC	1 cut(s)	549
NmuCI	GTSAC	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	232, 268
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	56, 117, 616
SatI	GCNGC	2 cut(s)	231, 267
Sau3AI	GATC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	5 cut(s)	52, 64, 156, 271, 437
SfaNI	GCATC	2 cut(s)	238, 253
SmlI	CTYRAG	2 cut(s)	116, 458
SmoI	CTYRAG	2 cut(s)	116, 458
Sse9I	AATT	7 cut(s)	274, 355, 374, 514, 538, 561, 601
SsiI	CCGC	1 cut(s)	498
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	153
TasI	AATT	7 cut(s)	274, 355, 374, 514, 538, 561, 601
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	56, 117, 616
Tru9I	TTAA	3 cut(s)	56, 117, 616
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	230, 266
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	4 cut(s)	122, 174, 230, 488
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	513
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	4 cut(s)	274, 355, 561, 601
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.