Rmu_sc0007205.1_g000010

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007205.1
OG0000687
Physical Location & Seq
Reverse (-)
55438 .. 56010
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007205.1_g000010.1.cds

Sequence Viewer

Length: 573 bp
atggccgatgccagcgagttatcggagattgcaatctgccaaatcctccaatcgctttccactaagtttgcagtccgggccagcattctttcaaagcaatgggaacgtgtctggccattagtcccggtattagattttgacgaggaagagaatgtacacaatggtcacaatgccagccctcgtcgacacagaaagttcctagagtttgtaacactgtgtttgaggcgtcgcgaagaagataagttgttacataaattccggctttgcatggcgtactgttattactgtaaagactgtggagagctcgtggataagtgtttgagttttgctcttgacagaaatgttaaagagttgcatattgctgaatcaggctacttcttatcacataaggttttgaatgctgaatatttaactgttttaagtttgtattttattgaaataagggatgatgatattgtaactcttccgtctttgaaatatttgtctctaatttgtataagttttggcgacttgggattcctccaccttatggcgcgcaggctgtccttccttcgagaatttgtcagtagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

190

Amino Acids

22.16

Weight (kDa)

6.38

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 529
AccI GTMKAC 1 cut(s) 184
AccII CGCG 2 cut(s) 231, 535
AcoI YGGCCR 2 cut(s) 3, 113
AcsI RAATTY 2 cut(s) 254, 557
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 2 cut(s) 156, 275
AfiI CCNNNNNNNGG 1 cut(s) 529
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 4 cut(s) 93, 397, 437, 475
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 489
AoxI GGCC 3 cut(s) 3, 78, 113
ApoI RAATTY 2 cut(s) 254, 557
AspLEI GCGC 2 cut(s) 535, 537
AspS9I GGNCC 1 cut(s) 78
AsuC2I CCSGG 2 cut(s) 77, 125
BalI TGGCCA 1 cut(s) 115
BanII GRGCYC 1 cut(s) 306
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BauI CACGAG 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 306
BcnI CCSGG 2 cut(s) 77, 125
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 1 cut(s) 200
Bme1390I CCNGG 2 cut(s) 77, 125
BmgT120I GGNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 77, 125
BplI GAGNNNNNCTC 2 cut(s) 313, 345
BpuMI CCSGG 2 cut(s) 77, 125
BsaBI GATNNNNATC 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse3DI GCAATG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 32
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 1 cut(s) 104
BsePI GCGCGC 1 cut(s) 533
Bsh1236I CGCG 2 cut(s) 231, 535
BshFI GGCC 3 cut(s) 5, 80, 115
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 3 cut(s) 76, 125, 259
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 107
BsmI GAATGC 2 cut(s) 84, 403
BsnI GGCC 3 cut(s) 5, 80, 115
Bsp1286I GDGCHC 1 cut(s) 306
Bsp1407I TGTACA 1 cut(s) 154
Bsp68I TCGCGA 1 cut(s) 231
BspANI GGCC 3 cut(s) 5, 80, 115
BspFNI CGCG 2 cut(s) 231, 535
BsrDI GCAATG 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 154
BssHII GCGCGC 1 cut(s) 533
BssNI GRCGYC 1 cut(s) 226
BssSI CACGAG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 305
Bst4CI ACNGT 5 cut(s) 216, 278, 287, 296, 415
Bst6I CTCTTC 2 cut(s) 141, 468
BstACI GRCGYC 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 154
BstC8I GCNNGC 5 cut(s) 13, 82, 175, 535, 539
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 2 cut(s) 231, 535
BstHHI GCGC 2 cut(s) 535, 537
BstMAI GTCTC 1 cut(s) 489
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 75, 123
BstUI CGCG 2 cut(s) 231, 535
BsuRI GGCC 3 cut(s) 5, 80, 115
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 212
BtuMI TCGCGA 1 cut(s) 231
Cac8I GCNNGC 5 cut(s) 13, 82, 175, 535, 539
CfoI GCGC 2 cut(s) 535, 537
Cfr13I GGNCC 1 cut(s) 78
CseI GACGC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 155, 274
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 1 cut(s) 268
CviJI RGCY 8 cut(s) 5, 80, 115, 177, 262, 304, 372, 541
CviKI_1 RGCY 8 cut(s) 5, 80, 115, 177, 262, 304, 372, 541
CviQI GTAC 2 cut(s) 155, 274
DdeI CTNAG 1 cut(s) 63
EaeI YGGCCR 2 cut(s) 3, 113
Eam1104I CTCTTC 2 cut(s) 141, 468
EarI CTCTTC 2 cut(s) 141, 468
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 1 cut(s) 271
FaiI YATR 6 cut(s) 252, 269, 357, 387, 497, 530
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 267
FblI GTMKAC 1 cut(s) 184
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 306
FspBI CTAG 1 cut(s) 200
GlaI GCGC 2 cut(s) 534, 536
HaeIII GGCC 3 cut(s) 5, 80, 115
HapII CCGG 3 cut(s) 76, 125, 259
HgaI GACGC 1 cut(s) 215
HhaI GCGC 2 cut(s) 535, 537
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 2 cut(s) 533, 535
HinP1I GCGC 2 cut(s) 533, 535
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HinfI GANTC 2 cut(s) 365, 516
HpaII CCGG 3 cut(s) 76, 125, 259
Hpy166II GTNNAC 2 cut(s) 157, 185
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 230, 332, 554
Hpy8I GTNNAC 2 cut(s) 157, 185
Hpy99I CGWCG 2 cut(s) 186, 231
HpyAV CCTTC 2 cut(s) 556, 560
HpyCH4III ACNGT 5 cut(s) 216, 278, 287, 296, 415
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 32, 71, 267, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 2 cut(s) 533, 535
LpnPI CCDG 9 cut(s) 25, 89, 94, 97, 138, 187, 272, 354, 523
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 4 cut(s) 164, 208, 246, 457
MboII GAAGA 4 cut(s) 158, 245, 248, 455
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 3 cut(s) 254, 489, 557
MluNI TGGCCA 1 cut(s) 115
MnlI CCTC 5 cut(s) 56, 136, 189, 216, 530
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 4 cut(s) 345, 410, 419, 571
Msp20I TGGCCA 1 cut(s) 115
MspI CCGG 3 cut(s) 76, 125, 259
MspR9I CCNGG 2 cut(s) 77, 125
Mva1269I GAATGC 2 cut(s) 84, 403
MvnI CGCG 2 cut(s) 231, 535
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 2 cut(s) 77, 125
NlaIII CATG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 164
NruI TCGCGA 1 cut(s) 231
PauI GCGCGC 1 cut(s) 533
PctI GAATGC 2 cut(s) 84, 403
PfeI GAWTC 2 cut(s) 365, 516
PflMI CCANNNNNTGG 1 cut(s) 529
Psp124BI GAGCTC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 78
PteI GCGCGC 1 cut(s) 533
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 2 cut(s) 156, 275
RsaNI GTAC 2 cut(s) 155, 274
SacI GAGCTC 1 cut(s) 306
SalI GTCGAC 1 cut(s) 183
SaqAI TTAA 4 cut(s) 345, 410, 419, 571
Sau96I GGNCC 1 cut(s) 78
ScrFI CCNGG 2 cut(s) 77, 125
SduI GDGCHC 1 cut(s) 306
SetI ASST 4 cut(s) 109, 306, 393, 528
Sse9I AATT 3 cut(s) 254, 489, 557
SspI AATATT 2 cut(s) 407, 479
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 75, 123
TaaI ACNGT 5 cut(s) 216, 278, 287, 296, 415
TaiI ACGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 184, 553
TasI AATT 3 cut(s) 254, 489, 557
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 2 cut(s) 365, 516
Tru1I TTAA 4 cut(s) 345, 410, 419, 571
Tru9I TTAA 4 cut(s) 345, 410, 419, 571
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 529
XapI RAATTY 2 cut(s) 254, 557
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.