Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Forward (+)

4557434 .. 4558086

Gene Structure 653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006121

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGACGTATTACCTGACTTTGTAGTCCATGAAATCGTGAAATACCTATCTACCAGACAAGCCGTCCGGGCTAGCATTCTCTCCAAGCAATGGGAAAGTCTTGGGTCTTCGGTCCCCGTATTAGATTTTGACGAGGATGAGAAAGAGCAACTTGGTGATGATGATGATGATGGCAGCTATCTTAGTCACAAAAAGTTCGTCGAATTTGTGACAATGTGTTTGAAGCGGCGTGAGAAAGATAAGTTGTTACATAAAATGAGGCTTCGCATGAGATATCCCTGTAGAGACGAAGAAAATAGTTGCTCAAATCTTTTGAATAAGTGTTTGAGATTTGCCATACACAGAAATGTTAAAGAATTATACATGGCTAAAACATTTGGCAACGAATCATGTTTTAGCCTTCGAAATGCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

139

Amino Acids

16.23

Weight (kDa)

6.43

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 40	4.6e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	90
AciI	CCGC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	2 cut(s)	223, 316
AhdI	GACNNNNNGTC	1 cut(s)	62
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	203
ArsI	GACNNNNNNTTYG	4 cut(s)	183, 202, 215, 234
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	403
AsuNHI	GCTAGC	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	175, 227
BlsI	GCNGC	2 cut(s)	176, 228
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	112
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	68
BmtI	GCTAGC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	403
BspACI	CCGC	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	114
BspOI	GCTAGC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	112
CviAII	CATG	4 cut(s)	29, 268, 364, 390
CviJI	RGCY	6 cut(s)	62, 71, 177, 262, 368, 399
CviKI_1	RGCY	6 cut(s)	62, 71, 177, 262, 368, 399
DdeI	CTNAG	1 cut(s)	182
DrdI	GACNNNNNNGTC	1 cut(s)	23
DriI	GACNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Eco32I	GATATC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	4 cut(s)	32, 271, 367, 393
FaiI	YATR	7 cut(s)	30, 252, 269, 338, 361, 365, 391
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	4 cut(s)	28, 267, 363, 389
Fnu4HI	GCNGC	2 cut(s)	175, 227
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	175, 227
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	2 cut(s)	175, 227
HapII	CCGG	1 cut(s)	67
Hin1II	CATG	4 cut(s)	32, 271, 367, 393
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	167
Hpy188III	TCNNGA	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	32, 271, 367, 393
LpnPI	CCDG	4 cut(s)	27, 67, 80, 292
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	185, 208, 246
MboII	GAAGA	2 cut(s)	99, 302
MluCI	AATT	2 cut(s)	203, 356
MnlI	CCTC	2 cut(s)	127, 252
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	68
NheI	GCTAGC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	32, 271, 367, 393
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	2 cut(s)	185, 208
NspV	TTCGAA	1 cut(s)	403
PctI	GAATGC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	176, 228
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	175, 227
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	4 cut(s)	9, 16, 48, 179
SfcI	CTRYAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	403
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	203, 356
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	66
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	201, 403
TaqII	GACCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	203, 356
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseFI	GTSAC	2 cut(s)	185, 208
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	2 cut(s)	185, 208
TspDTI	ATGAA	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	203
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.