Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Forward (+)

36912624 .. 36913631

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1278600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGTCAAAAGTACACCCGAGTTACCTGATCTTGTTATCTGCCAGATTCTCCAACTCCTTTCCACCAGATATGCCATACGGGCCAGCATACTCTCCAAGCAGTGGGAAAGGGTATGGTCTTTAATTCCCTTATTAGATTTCGACGAGGAAGAGCAACATGGTGATCATGTATTTCAACATGATAAGTTCGAATATTTCGTGACAAATTGTTTGAGGCGCCATGAGAAAGATCATAAGCAAGAATACTTAGATAAATTCAGGCTTCGTACGAGATACTATGGATACGAAAATCTCATCAACCAGTGCTTGAGTTTTGCTATTTGGAAAAACGTTAAACAGTTAGATTTGAGCCTATATACAACCCATAACTTGTCCTATCCTCTATACAACTTACCCCATACGGTTCTCAACGCAAAATCCTTAACTAGTTTGAACCTGGAGTCTGTGGCAATAAGTTGGGGTTGGGGCTTTCAACATGTAAGACTTCCTTCTTTGAAATCTATGTCCCTCAAAGAAGTGCTCGTGGACGAGTTTGCATTCGTCAAATTGATTTTGGGGTGCCCTTCAATTGAGAATTTGTCAATTGACTCATGTGGCGGCCTATCGAGGGTTGATGTTTCAAGTTCCAGCCTAAAGTCTTTGGAAGTAATAAGGGGTTTCACAGAATACGAGCTTACAGTAAAAGCTGCGAATCTTGAATCTTTTAGATTGGGTGATAGTGTTCATCATGTGAGCGGAAACGATGATTTCAATGAGAGACGTGGTACAATTATTGAAACTCCAAAGCTACGTTCTTGTGAGTTCATTGGTTATTGGCAGACTGGATTTTCTTTGAATGCTCCAAAATTATCTGAGGCTACCATCATACTTGGGGACAGAGCGGATTCTTATTTCAACACATTCCCGCACAATCCTAAAATGAGAAATTTTCTTGGTCAGTTTGACTGCTCCGGAAAAATGAGCTTACATGTTATGGATGCTGAGGTATTTATATGGCTTAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_2

Protein Analysis

336

Amino Acids

38.71

Weight (kDa)

6.18

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	83 - 247	5.8e-12	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	106 - 276	5.5e-19	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	216, 558
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccBSI	CCGCTC	2 cut(s)	735, 881
AccIII	TCCGGA	1 cut(s)	950
AciI	CCGC	4 cut(s)	597, 735, 881, 905
AclI	AACGTT	1 cut(s)	330
AcsI	RAATTY	3 cut(s)	254, 574, 925
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	3 cut(s)	13, 268, 766
AfiI	CCNNNNNNNGG	2 cut(s)	102, 607
AflIII	ACRYGT	2 cut(s)	475, 967
AhlI	ACTAGT	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	435
AjuI	GAANNNNNNNTTGG	2 cut(s)	775, 807
AluBI	AGCT	4 cut(s)	673, 686, 787, 963
AluI	AGCT	4 cut(s)	673, 686, 787, 963
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	1 cut(s)	751
Ama87I	CYCGRG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	950
AoxI	GGCC	2 cut(s)	81, 598
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	3 cut(s)	254, 574, 925
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	173, 725
AsuII	TTCGAA	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	563
BanI	GGYRCC	2 cut(s)	216, 558
BauI	CACGAG	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	981
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	1 cut(s)	869
BciT130I	CCWGG	1 cut(s)	437
BciVI	GTATCC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	751
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	275
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	598, 687
BlsI	GCNGC	2 cut(s)	599, 688
Bme1390I	CCNGG	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	761
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	2 cut(s)	218, 560
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	1 cut(s)	967
BpmI	CTGGAG	1 cut(s)	458
Bpu10I	CCTNAGC	1 cut(s)	981
Bpu14I	TTCGAA	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	217
BsaWI	WCCGGW	1 cut(s)	950
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 607
Bse1I	ACTGG	2 cut(s)	301, 826
BseAI	TCCGGA	1 cut(s)	950
BseBI	CCWGG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	982
BseLI	CCNNNNNNNGG	2 cut(s)	102, 607
BseMII	CTCAG	2 cut(s)	843, 972
BseNI	ACTGG	2 cut(s)	301, 826
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	1 cut(s)	673
BshFI	GGCC	2 cut(s)	83, 600
BshNI	GGYRCC	2 cut(s)	216, 558
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	951
BsiWI	CGTACG	1 cut(s)	266
BslFI	GGGAC	2 cut(s)	490, 887
BslI	CCNNNNNNNGG	2 cut(s)	102, 607
BsmAI	GTCTC	1 cut(s)	751
BsmBI	CGTCTC	1 cut(s)	751
BsmFI	GGGAC	2 cut(s)	490, 887
BsmI	GAATGC	2 cut(s)	536, 841
BsnI	GGCC	2 cut(s)	83, 600
BsoBI	CYCGRG	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	522, 563
Bsp13I	TCCGGA	1 cut(s)	950
Bsp143I	GATC	3 cut(s)	28, 163, 229
BspACI	CCGC	4 cut(s)	597, 735, 881, 905
BspANI	GGCC	2 cut(s)	83, 600
BspCNI	CTCAG	2 cut(s)	844, 973
BspEI	TCCGGA	1 cut(s)	950
BspLI	GGNNCC	2 cut(s)	218, 560
BspQI	GCTCTTC	1 cut(s)	144
BspT104I	TTCGAA	1 cut(s)	189
BspT107I	GGYRCC	2 cut(s)	216, 558
BsrBI	CCGCTC	2 cut(s)	735, 881
BsrI	ACTGG	2 cut(s)	301, 826
BssMI	GATC	3 cut(s)	28, 163, 229
BssNI	GRCGYC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	3 cut(s)	339, 403, 679
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	3 cut(s)	247, 852, 981
BstF5I	GGATG	1 cut(s)	982
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	3 cut(s)	31, 166, 232
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	3 cut(s)	28, 163, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	2 cut(s)	479, 971
BstSCI	CCNGG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	563
BstV1I	GCAGC	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	83, 600
BtrI	CACGTC	1 cut(s)	761
BtsCI	GGATG	1 cut(s)	982
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	2 cut(s)	107, 308
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	3 cut(s)	12, 267, 765
CviAII	CATG	8 cut(s)	158, 167, 179, 221, 476, 591, 728, 968
CviQI	GTAC	3 cut(s)	12, 267, 765
DdeI	CTNAG	3 cut(s)	247, 852, 981
DinI	GGCGCC	1 cut(s)	218
DpnI	GATC	3 cut(s)	30, 165, 231
DpnII	GATC	3 cut(s)	28, 163, 229
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	435
EgeI	GGCGCC	1 cut(s)	218
EheI	GGCGCC	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	751
FaeI	CATG	8 cut(s)	161, 170, 182, 224, 479, 594, 731, 971
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FaqI	GGGAC	2 cut(s)	490, 887
FatI	CATG	8 cut(s)	157, 166, 178, 220, 475, 590, 727, 967
FauI	CCCGC	1 cut(s)	912
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	598, 687
FokI	GGATG	1 cut(s)	989
Fsp4HI	GCNGC	2 cut(s)	598, 687
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	598, 687
GsuI	CTGGAG	1 cut(s)	458
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	83, 600
HapII	CCGG	1 cut(s)	951
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	8 cut(s)	161, 170, 182, 224, 479, 594, 731, 971
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	6 cut(s)	46, 440, 587, 691, 698, 884
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	2 cut(s)	173, 725
Hpy166II	GTNNAC	2 cut(s)	14, 526
Hpy188I	TCNGA	1 cut(s)	853
Hpy188III	TCNNGA	3 cut(s)	199, 695, 951
Hpy8I	GTNNAC	2 cut(s)	14, 526
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	498, 573
HpyCH4III	ACNGT	3 cut(s)	339, 403, 679
HpyCH4IV	ACGT	3 cut(s)	330, 760, 790
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	3 cut(s)	247, 852, 981
HpySE526I	ACGT	3 cut(s)	330, 760, 790
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	8 cut(s)	161, 170, 182, 224, 479, 594, 731, 971
HspAI	GCGC	1 cut(s)	217
KasI	GGCGCC	1 cut(s)	216
Kpn2I	TCCGGA	1 cut(s)	950
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	28, 163, 229
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	844, 953
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	1 cut(s)	967
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	3 cut(s)	330, 760, 790
MaeIII	GTNAC	2 cut(s)	21, 199
MalI	GATC	3 cut(s)	30, 165, 231
MbiI	CCGCTC	2 cut(s)	735, 881
MboI	GATC	3 cut(s)	28, 163, 229
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	2 cut(s)	567, 582
MhlI	GDGCHC	2 cut(s)	522, 563
Mly113I	GGCGCC	1 cut(s)	217
MlyI	GAGTC	2 cut(s)	449, 581
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	7 cut(s)	139, 207, 390, 518, 600, 847, 976
MroI	TCCGGA	1 cut(s)	950
MseI	TTAA	5 cut(s)	122, 333, 422, 999, 1006
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	1 cut(s)	437
MunI	CAATTG	2 cut(s)	567, 582
Mva1269I	GAATGC	2 cut(s)	536, 841
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	80
NarI	GGCGCC	1 cut(s)	217
NdeII	GATC	3 cut(s)	28, 163, 229
NlaIII	CATG	8 cut(s)	161, 170, 182, 224, 479, 594, 731, 971
NlaIV	GGNNCC	2 cut(s)	218, 560
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	2 cut(s)	479, 971
NspV	TTCGAA	1 cut(s)	189
PciI	ACATGT	2 cut(s)	475, 967
PciSI	GCTCTTC	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	2 cut(s)	536, 841
PfeI	GAWTC	4 cut(s)	46, 691, 698, 884
Pfl23II	CGTACG	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	599, 688
PleI	GAGTC	2 cut(s)	448, 581
PluTI	GGCGCC	1 cut(s)	220
PpsI	GAGTC	2 cut(s)	448, 581
PscI	ACATGT	2 cut(s)	475, 967
Psp1406I	AACGTT	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspLI	CGTACG	1 cut(s)	266
PspN4I	GGNNCC	2 cut(s)	218, 560
PspPI	GGNCC	1 cut(s)	81
RsaI	GTAC	3 cut(s)	13, 268, 766
RsaNI	GTAC	3 cut(s)	12, 267, 765
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	5 cut(s)	122, 333, 422, 999, 1006
SatI	GCNGC	2 cut(s)	598, 687
Sau3AI	GATC	3 cut(s)	28, 163, 229
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	2 cut(s)	449, 581
ScrFI	CCNGG	1 cut(s)	437
SduI	GDGCHC	2 cut(s)	522, 563
SfaNI	GCATC	1 cut(s)	967
SfoI	GGCGCC	1 cut(s)	218
SfuI	TTCGAA	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SpeI	ACTAGT	1 cut(s)	425
SsiI	CCGC	4 cut(s)	597, 735, 881, 905
SspDI	GGCGCC	1 cut(s)	216
SspI	AATATT	1 cut(s)	194
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	435
TaaI	ACNGT	3 cut(s)	339, 403, 679
TaiI	ACGT	3 cut(s)	333, 763, 793
TaqI	TCGA	3 cut(s)	141, 189, 605
TatI	WGTACW	1 cut(s)	11
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	4 cut(s)	46, 691, 698, 884
Tru1I	TTAA	5 cut(s)	122, 333, 422, 999, 1006
Tru9I	TTAA	5 cut(s)	122, 333, 422, 999, 1006
TscAI	CASTG	2 cut(s)	107, 308
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	713, 793
TspRI	CASTG	2 cut(s)	107, 308
Van91I	CCANNNNNTGG	1 cut(s)	102
XapI	RAATTY	3 cut(s)	254, 574, 925
XceI	RCATGY	2 cut(s)	479, 971
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.