Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_1 | PF00076 | 41 - 111 | 2.7e-23 | RNA recognition motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 222 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 395 |
| AcoI | YGGCCR | 1 cut(s) | 323 |
| AcsI | RAATTY | 1 cut(s) | 256 |
| AcuI | CTGAAG | 2 cut(s) | 59, 219 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 395 |
| AgsI | TTSAA | 1 cut(s) | 111 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 157 |
| AjnI | CCWGG | 1 cut(s) | 388 |
| AleI | CACNNNNGTG | 1 cut(s) | 200 |
| AluBI | AGCT | 1 cut(s) | 121 |
| AluI | AGCT | 1 cut(s) | 121 |
| AoxI | GGCC | 1 cut(s) | 323 |
| ApoI | RAATTY | 1 cut(s) | 256 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 354 |
| AspS9I | GGNCC | 1 cut(s) | 144 |
| AsuHPI | GGTGA | 1 cut(s) | 84 |
| AvaII | GGWCC | 1 cut(s) | 144 |
| BbsI | GAAGAC | 1 cut(s) | 93 |
| BccI | CCATC | 3 cut(s) | 296, 310, 395 |
| BciT130I | CCWGG | 1 cut(s) | 390 |
| BfaI | CTAG | 2 cut(s) | 33, 237 |
| BfmI | CTRYAG | 1 cut(s) | 369 |
| BfuAI | ACCTGC | 1 cut(s) | 222 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 390 |
| Bme1390I | CCNGG | 1 cut(s) | 390 |
| Bme18I | GGWCC | 1 cut(s) | 144 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 1 cut(s) | 144 |
| BmrFI | CCNGG | 1 cut(s) | 390 |
| BmsI | GCATC | 4 cut(s) | 50, 71, 265, 283 |
| BpiI | GAAGAC | 1 cut(s) | 93 |
| BsaJI | CCNNGG | 2 cut(s) | 147, 264 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 354, 384, 390, 420 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 395 |
| BseBI | CCWGG | 1 cut(s) | 390 |
| BseDI | CCNNGG | 2 cut(s) | 147, 264 |
| BseGI | GGATG | 1 cut(s) | 307 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 395 |
| BseMII | CTCAG | 2 cut(s) | 240, 320 |
| BshFI | GGCC | 1 cut(s) | 325 |
| BslFI | GGGAC | 2 cut(s) | 145, 379 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 395 |
| BsmFI | GGGAC | 2 cut(s) | 145, 379 |
| BsnI | GGCC | 1 cut(s) | 325 |
| BspANI | GGCC | 1 cut(s) | 325 |
| BspCNI | CTCAG | 2 cut(s) | 239, 321 |
| BspMI | ACCTGC | 1 cut(s) | 222 |
| BspQI | GCTCTTC | 2 cut(s) | 31, 128 |
| BssECI | CCNNGG | 2 cut(s) | 147, 264 |
| BssT1I | CCWWGG | 2 cut(s) | 147, 264 |
| Bst2UI | CCWGG | 1 cut(s) | 390 |
| Bst4CI | ACNGT | 2 cut(s) | 99, 370 |
| Bst6I | CTCTTC | 3 cut(s) | 31, 128, 184 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 293 |
| BstDEI | CTNAG | 2 cut(s) | 226, 329 |
| BstF5I | GGATG | 1 cut(s) | 307 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 38, 284, 293, 390 |
| BstNI | CCWGG | 1 cut(s) | 390 |
| BstSCI | CCNGG | 1 cut(s) | 388 |
| BstSFI | CTRYAG | 1 cut(s) | 369 |
| BstV2I | GAAGAC | 1 cut(s) | 93 |
| BsuRI | GGCC | 1 cut(s) | 325 |
| BtgZI | GCGATG | 1 cut(s) | 94 |
| BtsCI | GGATG | 1 cut(s) | 307 |
| BtsIMutI | CAGTG | 2 cut(s) | 195, 326 |
| BveI | ACCTGC | 1 cut(s) | 222 |
| Cfr13I | GGNCC | 1 cut(s) | 144 |
| CseI | GACGC | 1 cut(s) | 179 |
| CviAII | CATG | 1 cut(s) | 141 |
| CviJI | RGCY | 3 cut(s) | 121, 135, 325 |
| CviKI_1 | RGCY | 3 cut(s) | 121, 135, 325 |
| DdeI | CTNAG | 2 cut(s) | 226, 329 |
| DriI | GACNNNNNGTC | 1 cut(s) | 157 |
| EaeI | YGGCCR | 1 cut(s) | 323 |
| Eam1104I | CTCTTC | 3 cut(s) | 31, 128, 184 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 157 |
| EarI | CTCTTC | 3 cut(s) | 31, 128, 184 |
| Eco130I | CCWWGG | 2 cut(s) | 147, 264 |
| Eco47I | GGWCC | 1 cut(s) | 144 |
| Eco57I | CTGAAG | 2 cut(s) | 59, 219 |
| EcoRII | CCWGG | 1 cut(s) | 388 |
| EcoT14I | CCWWGG | 2 cut(s) | 147, 264 |
| ErhI | CCWWGG | 2 cut(s) | 147, 264 |
| FaeI | CATG | 1 cut(s) | 144 |
| FaiI | YATR | 6 cut(s) | 142, 186, 209, 216, 299, 418 |
| FaqI | GGGAC | 2 cut(s) | 145, 379 |
| FatI | CATG | 1 cut(s) | 140 |
| FokI | GGATG | 1 cut(s) | 314 |
| FspBI | CTAG | 2 cut(s) | 33, 237 |
| HaeIII | GGCC | 1 cut(s) | 325 |
| HgaI | GACGC | 1 cut(s) | 179 |
| Hin1II | CATG | 1 cut(s) | 144 |
| HincII | GTYRAC | 1 cut(s) | 21 |
| HindII | GTYRAC | 1 cut(s) | 21 |
| HinfI | GANTC | 1 cut(s) | 224 |
| HpaI | GTTAAC | 1 cut(s) | 21 |
| HphI | GGTGA | 1 cut(s) | 84 |
| Hpy166II | GTNNAC | 2 cut(s) | 21, 92 |
| Hpy188I | TCNGA | 1 cut(s) | 131 |
| Hpy188III | TCNNGA | 2 cut(s) | 237, 347 |
| Hpy8I | GTNNAC | 2 cut(s) | 21, 92 |
| Hpy99I | CGWCG | 1 cut(s) | 131 |
| HpyAV | CCTTC | 1 cut(s) | 395 |
| HpyCH4III | ACNGT | 2 cut(s) | 99, 370 |
| HpyCH4V | TGCA | 1 cut(s) | 287 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 38, 284, 293, 390 |
| HpyF3I | CTNAG | 2 cut(s) | 226, 329 |
| Hsp92II | CATG | 1 cut(s) | 144 |
| KspAI | GTTAAC | 1 cut(s) | 21 |
| LguI | GCTCTTC | 2 cut(s) | 31, 128 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LpnPI | CCDG | 6 cut(s) | 33, 176, 213, 217, 375, 402 |
| LweI | GCATC | 4 cut(s) | 50, 71, 265, 283 |
| MaeI | CTAG | 2 cut(s) | 33, 237 |
| MaeIII | GTNAC | 2 cut(s) | 193, 202 |
| MboII | GAAGA | 7 cut(s) | 48, 93, 96, 99, 115, 171, 281 |
| MluCI | AATT | 2 cut(s) | 66, 256 |
| MlyI | GAGTC | 1 cut(s) | 218 |
| MmeI | TCCRAC | 1 cut(s) | 109 |
| MnlI | CCTC | 6 cut(s) | 125, 184, 233, 324, 356, 390 |
| MroXI | GAANNNNTTC | 1 cut(s) | 354 |
| MseI | TTAA | 2 cut(s) | 20, 408 |
| MslI | CAYNNNNRTG | 1 cut(s) | 200 |
| MspR9I | CCNGG | 1 cut(s) | 390 |
| MvaI | CCWGG | 1 cut(s) | 390 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 38, 284, 293, 390 |
| NlaIII | CATG | 1 cut(s) | 144 |
| NmuCI | GTSAC | 2 cut(s) | 193, 202 |
| OliI | CACNNNNGTG | 1 cut(s) | 200 |
| PciSI | GCTCTTC | 2 cut(s) | 31, 128 |
| PdmI | GAANNNNTTC | 1 cut(s) | 354 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 395 |
| PleI | GAGTC | 1 cut(s) | 218 |
| PpsI | GAGTC | 1 cut(s) | 218 |
| Psp6I | CCWGG | 1 cut(s) | 388 |
| PspGI | CCWGG | 1 cut(s) | 388 |
| PspPI | GGNCC | 1 cut(s) | 144 |
| RseI | CAYNNNNRTG | 1 cut(s) | 200 |
| SapI | GCTCTTC | 2 cut(s) | 31, 128 |
| SaqAI | TTAA | 2 cut(s) | 20, 408 |
| Sau96I | GGNCC | 1 cut(s) | 144 |
| SchI | GAGTC | 1 cut(s) | 218 |
| ScrFI | CCNGG | 1 cut(s) | 390 |
| SetI | ASST | 3 cut(s) | 123, 195, 236 |
| SfaNI | GCATC | 4 cut(s) | 50, 71, 265, 283 |
| SfcI | CTRYAG | 1 cut(s) | 369 |
| SinI | GGWCC | 1 cut(s) | 144 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 200 |
| Sse9I | AATT | 2 cut(s) | 66, 256 |
| SspMI | CTAG | 2 cut(s) | 33, 237 |
| StyD4I | CCNGG | 1 cut(s) | 388 |
| StyI | CCWWGG | 2 cut(s) | 147, 264 |
| TaaI | ACNGT | 2 cut(s) | 99, 370 |
| TaqI | TCGA | 1 cut(s) | 348 |
| TasI | AATT | 2 cut(s) | 66, 256 |
| Tru1I | TTAA | 2 cut(s) | 20, 408 |
| Tru9I | TTAA | 2 cut(s) | 20, 408 |
| TscAI | CASTG | 2 cut(s) | 202, 333 |
| TseFI | GTSAC | 2 cut(s) | 193, 202 |
| Tsp45I | GTSAC | 2 cut(s) | 193, 202 |
| TspRI | CASTG | 2 cut(s) | 202, 333 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 395 |
| VpaK11BI | GGWCC | 1 cut(s) | 144 |
| XapI | RAATTY | 1 cut(s) | 256 |
| XbaI | TCTAGA | 1 cut(s) | 236 |
| XmnI | GAANNNNTTC | 1 cut(s) | 354 |
| XspI | CTAG | 2 cut(s) | 33, 237 |