Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Reverse (-)

14994518 .. 14995713

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G124600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATGACCCATGGAAAGCAAAACTCCATGGCCACCGCCACAATACCTCACTTACCTGTCCTTGTAATCCACCACGTCCTCCAATTCCTTCCCACAAAACTTGCCATCCGCATTAGCTATCTATGCAAGCAATGGGAAGGGCTGTGGTCATCAGTCCCAGTTTTAGATTTCGACGAGGAAGACAAGCCAGACGACAGACTACAGCATGCAAAGTTTATCAATTTGTTGGACCGTCTAAAGCGCGTGGAGATACTACCAGGTGACGATAATATTAATAATGATCGTAAAGCTGTAGGCCTTCTGTCTTTGAAAACAATGTCCCTCGAAAGGGTGATGCTGGATGACATGACTTTCGGTCGTTTAATGTCAGGGAGCCCCTGCCTTGAGCATTTGTCAGTATCTTTAATATATCTGATCATATTCATATACCGCGTTCCAGTATCAAATCCTTGCAAGTTACGAATATCAATTCTACGACGTTCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

163

Amino Acids

18.61

Weight (kDa)

8.48

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	243, 432
AciI	CCGC	3 cut(s)	36, 109, 430
AcoI	YGGCCR	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	327, 328
AgsI	TTSAA	1 cut(s)	310
AhdI	GACNNNNNGTC	1 cut(s)	354
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	2 cut(s)	117, 290
AluI	AGCT	2 cut(s)	117, 290
AoxI	GGCC	2 cut(s)	30, 295
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	272, 343
AvaII	GGWCC	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	186
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	414
BfmI	CTRYAG	2 cut(s)	200, 291
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	229
BmeRI	GACNNNNNGTC	1 cut(s)	354
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	10, 27
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 328
Bse1I	ACTGG	2 cut(s)	158, 437
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	10, 27
BseGI	GGATG	2 cut(s)	105, 346
BseLI	CCNNNNNNNGG	2 cut(s)	327, 328
BseMI	GCAATG	1 cut(s)	137
BseNI	ACTGG	2 cut(s)	158, 437
Bsh1236I	CGCG	2 cut(s)	243, 432
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	32, 297
BsiEI	CGRYCG	1 cut(s)	358
BslFI	GGGAC	2 cut(s)	140, 304
BslI	CCNNNNNNNGG	2 cut(s)	327, 328
BsmFI	GGGAC	2 cut(s)	140, 304
BsnI	GGCC	2 cut(s)	32, 297
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	2 cut(s)	280, 414
Bsp19I	CCATGG	2 cut(s)	10, 27
BspACI	CCGC	3 cut(s)	36, 109, 430
BspANI	GGCC	2 cut(s)	32, 297
BspFNI	CGCG	2 cut(s)	243, 432
BspLI	GGNNCC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	158, 437
BssECI	CCNNGG	2 cut(s)	10, 27
BssMI	GATC	2 cut(s)	280, 414
BssT1I	CCWWGG	2 cut(s)	10, 27
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	128, 207
BstDSI	CCRYGG	2 cut(s)	10, 27
BstF5I	GGATG	2 cut(s)	105, 346
BstFNI	CGCG	2 cut(s)	243, 432
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	283, 417
BstMBI	GATC	2 cut(s)	280, 414
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	2 cut(s)	200, 291
BstUI	CGCG	2 cut(s)	243, 432
BstV2I	GAAGAC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	32, 297
BtgI	CCRYGG	2 cut(s)	10, 27
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	105, 346
Cac8I	GCNNGC	2 cut(s)	128, 207
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	229
CsiI	ACCWGGT	1 cut(s)	256
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	4 cut(s)	11, 28, 206, 346
CviJI	RGCY	7 cut(s)	32, 117, 142, 187, 290, 297, 375
CviKI_1	RGCY	7 cut(s)	32, 117, 142, 187, 290, 297, 375
DpnI	GATC	2 cut(s)	282, 416
DpnII	GATC	2 cut(s)	280, 414
DriI	GACNNNNNGTC	1 cut(s)	354
EaeI	YGGCCR	1 cut(s)	30
Eam1105I	GACNNNNNGTC	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	10, 27
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	10, 27
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	2 cut(s)	10, 27
FaeI	CATG	4 cut(s)	14, 31, 209, 349
FaiI	YATR	9 cut(s)	12, 29, 124, 207, 347, 409, 419, 425, 427
FaqI	GGGAC	2 cut(s)	140, 304
FatI	CATG	4 cut(s)	10, 27, 205, 345
FbaI	TGATCA	1 cut(s)	414
FokI	GGATG	2 cut(s)	92, 353
FriOI	GRGCYC	1 cut(s)	377
GlaI	GCGC	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	32, 297
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	14, 31, 209, 349
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HphI	GGTGA	2 cut(s)	272, 343
Hpy188I	TCNGA	2 cut(s)	414, 484
Hpy99I	CGWCG	2 cut(s)	176, 480
HpyAV	CCTTC	3 cut(s)	98, 131, 308
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	2 cut(s)	75, 478
HpyCH4V	TGCA	3 cut(s)	126, 209, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	75, 478
Hsp92II	CATG	4 cut(s)	14, 31, 209, 349
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	280, 414
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	9 cut(s)	69, 171, 201, 243, 270, 323, 354, 391, 450
LweI	GCATC	1 cut(s)	324
MabI	ACCWGGT	1 cut(s)	256
MaeII	ACGT	2 cut(s)	75, 478
MaeIII	GTNAC	2 cut(s)	260, 456
MalI	GATC	2 cut(s)	282, 416
MboI	GATC	2 cut(s)	280, 414
MboII	GAAGA	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	377
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	3 cut(s)	83, 220, 468
MluNI	TGGCCA	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	4 cut(s)	57, 89, 169, 332
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	3 cut(s)	273, 362, 404
Msp20I	TGGCCA	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	2 cut(s)	243, 432
MwoI	GCNNNNNNNGC	1 cut(s)	123
NcoI	CCATGG	2 cut(s)	10, 27
NdeII	GATC	2 cut(s)	280, 414
NlaIII	CATG	4 cut(s)	14, 31, 209, 349
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	297
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	374
PspPI	GGNCC	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	273, 362, 404
Sau3AI	GATC	2 cut(s)	280, 414
Sau96I	GGNCC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	7 cut(s)	49, 58, 78, 119, 262, 292, 481
SexAI	ACCWGGT	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	2 cut(s)	200, 291
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	3 cut(s)	83, 220, 468
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	3 cut(s)	36, 109, 430
SspI	AATATT	1 cut(s)	271
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	10, 27
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	2 cut(s)	78, 481
TaqI	TCGA	2 cut(s)	171, 324
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	3 cut(s)	83, 220, 468
Tru1I	TTAA	3 cut(s)	273, 362, 404
Tru9I	TTAA	3 cut(s)	273, 362, 404
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	229
VspI	ATTAAT	1 cut(s)	273
XceI	RCATGY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.