Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Reverse (-)

10352497 .. 10352919

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAACAACATTTCAGTCGAAGCTCCAAATCTCTCGGAGGTTAGAATCCAACTTCGGGATTCAGAACCCGCCATCGACTGGTCATGGAATCATTTTTCTACCCTGAGCGATTTTCTCCATAATTTTGCTTGCTCTGAAAAAGTAGCCCTCTTTGTTCGTGATGTTGAGGCAAGTAGCCATCTCTTTAATCAGTTTGTAGTGCTCTTCTGTATTTCAAGTTGTGCTTTAATTTGTTCACTCAATTTTCCGGAAGATTTCACAAAGACGTGCTCTTCACCGTTGCGCAACGTCAAGGAACTTGAGGGAAGGATTCTTTCTCCGTCGGGTGCTATAGACTCCGACTTAAGAGACTCCTTGGTTTGGATGGCACCTTCTGCGAGCATTCCACCAGTGAGGTACTCTCGAGATATCTCGCCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

141

Amino Acids

15.67

Weight (kDa)

4.9

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	3 cut(s)	55, 78, 360
AflII	CTTAAG	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	216
AjiI	CACGTC	1 cut(s)	267
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	2 cut(s)	204, 272
Alw26I	GTCTC	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	402
Aor13HI	TCCGGA	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	367
Bbv12I	GWGCWC	2 cut(s)	204, 272
BccI	CCATC	3 cut(s)	80, 186, 358
BcoDI	GTCTC	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	402
BmgBI	CACGTC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
Bpu10I	CCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 78, 360
Bse1I	ACTGG	2 cut(s)	83, 389
BseAI	TCCGGA	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	55, 78, 360
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	83, 389
BshNI	GGYRCC	1 cut(s)	367
BsiHKAI	GWGCWC	2 cut(s)	204, 272
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	55, 78, 360
BsmAI	GTCTC	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	381
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	204, 272
Bsp13I	TCCGGA	1 cut(s)	247
BspACI	CCGC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	96
BspEI	TCCGGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	369
BspQI	GCTCTTC	2 cut(s)	209, 277
BspT107I	GGYRCC	1 cut(s)	367
BspTI	CTTAAG	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	83, 389
BssECI	CCNNGG	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	2 cut(s)	209, 277
BstAFI	CTTAAG	1 cut(s)	343
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	130, 379
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	330
BtrI	CACGTC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	130, 379
CfoI	GCGC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	1 cut(s)	84
CviJI	RGCY	3 cut(s)	23, 146, 177
CviKI_1	RGCY	3 cut(s)	23, 146, 177
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	104
Eam1104I	CTCTTC	2 cut(s)	209, 277
EarI	CTCTTC	2 cut(s)	209, 277
Eco130I	CCWWGG	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	87
FaiI	YATR	3 cut(s)	85, 120, 332
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	1 cut(s)	83
FauI	CCCGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	376
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	1 cut(s)	284
HapII	CCGG	1 cut(s)	248
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	6 cut(s)	45, 59, 88, 310, 335, 350
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	4 cut(s)	37, 64, 136, 340
Hpy188III	TCNNGA	5 cut(s)	56, 158, 248, 402, 404
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	300, 381
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	3 cut(s)	266, 288, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	3 cut(s)	266, 288, 419
Hsp92II	CATG	1 cut(s)	87
HspAI	GCGC	1 cut(s)	283
Kpn2I	TCCGGA	1 cut(s)	247
LguI	GCTCTTC	2 cut(s)	209, 277
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	4 cut(s)	64, 116, 261, 402
MaeII	ACGT	3 cut(s)	266, 288, 419
MboII	GAAGA	3 cut(s)	196, 263, 264
MhlI	GDGCHC	2 cut(s)	204, 272
MluCI	AATT	3 cut(s)	121, 228, 241
MlyI	GAGTC	2 cut(s)	329, 344
MmeI	TCCRAC	2 cut(s)	73, 363
MnlI	CCTC	5 cut(s)	31, 158, 160, 295, 387
MroI	TCCGGA	1 cut(s)	247
MseI	TTAA	3 cut(s)	186, 227, 344
MspCI	CTTAAG	1 cut(s)	343
MspI	CCGG	1 cut(s)	248
Mva1269I	GAATGC	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	374
NlaIII	CATG	1 cut(s)	87
NlaIV	GGNNCC	1 cut(s)	369
NsbI	TGCGCA	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	402
PciSI	GCTCTTC	2 cut(s)	209, 277
PctI	GAATGC	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	45, 59, 88, 310
PflMI	CCANNNNNTGG	1 cut(s)	78
PleI	GAGTC	2 cut(s)	329, 344
PpsI	GAGTC	2 cut(s)	329, 344
PspN4I	GGNNCC	1 cut(s)	369
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SapI	GCTCTTC	2 cut(s)	209, 277
SaqAI	TTAA	3 cut(s)	186, 227, 344
SchI	GAGTC	2 cut(s)	329, 344
SduI	GDGCHC	2 cut(s)	204, 272
SetI	ASST	7 cut(s)	25, 42, 269, 291, 373, 398, 422
SfcI	CTRYAG	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	402
SlaI	CTCGAG	1 cut(s)	402
SmlI	CTYRAG	3 cut(s)	299, 343, 402
SmoI	CTYRAG	3 cut(s)	299, 343, 402
Sse9I	AATT	3 cut(s)	121, 228, 241
SsiI	CCGC	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	3 cut(s)	269, 291, 422
TaqI	TCGA	3 cut(s)	18, 75, 403
TasI	AATT	3 cut(s)	121, 228, 241
TfiI	GAWTC	4 cut(s)	45, 59, 88, 310
Tru1I	TTAA	3 cut(s)	186, 227, 344
Tru9I	TTAA	3 cut(s)	186, 227, 344
TscAI	CASTG	1 cut(s)	396
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.