Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002952.1

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Forward (+)

20986 .. 21918

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002952.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggctaagaagagaaaaacttcaggctgcagctaccacgactcaaagacaaacaaaaagaaagacgatgaacaaaacaaaagccctagcacggtctttgaagtcgacagatacgtacccgaattgcctgaccttgttatccaccaaatcctcttatttctcactctcctttcccccaagcaagccgctcgggccagccttgtttccaagcaatgggcaagcgtatggttttcgcttccggtactagcttttgaggagtacgatcaggatcctaagccatacactgatgataaggctcggcgaaaacagttcatcaacttcgtgaataccaatttgaagcgctgggagaaagataagcgcgacttagataagttggggcttcgtatgaaatactcggcaagtcgtggcaccatacaaaagtgcttgagttttgctgttgatagaaacgttaaagagatagacataagttttacaagagaaagcatagctgggcagagatgcaaaaccttctccttatcaccaatgcttctcaacagtgcaaaatctctaaccattctaaagttggagaatgtaaatctcctaagggacttcactagtgctataataagccttccgtctttgaaaactatgtccctcaaccatttgcgaagtaatttgacattcttgcaattactttcggggtgtcctttgcttgagaatttgttgttaaattcatgtgttggcttccacggtgtactttcaagttcgagcctcaaatccctggacgttgtgcaatgcaagtcattgcaagttcaagccgagaatcttgaatctattaagctgggtggcaatgaatcctttgatatcacctcttgtgaaagagtggccattaggaaatttttatccgaatattttgggggagaggatcctctcctaatgttcttatcttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

310

Amino Acids

35.09

Weight (kDa)

9.2

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	407
AccB7I	CCANNNNNTGG	1 cut(s)	213
AccBSI	CCGCTC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	360
AciI	CCGC	1 cut(s)	186
AclI	AACGTT	1 cut(s)	447
AclWI	GGATC	4 cut(s)	263, 276, 899, 912
AcoI	YGGCCR	1 cut(s)	864
AcsI	RAATTY	3 cut(s)	697, 709, 875
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	4 cut(s)	117, 243, 260, 735
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	91, 213
AgsI	TTSAA	6 cut(s)	101, 337, 622, 741, 794, 809
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	1 cut(s)	759
AluBI	AGCT	4 cut(s)	33, 248, 488, 820
AluI	AGCT	4 cut(s)	33, 248, 488, 820
AlwI	GGATC	4 cut(s)	263, 276, 899, 912
Ama87I	CYCGRG	1 cut(s)	189
Aor51HI	AGCGCT	1 cut(s)	341
AoxI	GGCC	2 cut(s)	192, 864
ApeKI	GCWGC	2 cut(s)	27, 30
ApoI	RAATTY	3 cut(s)	697, 709, 875
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	342, 360
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	510, 838
AvaI	CYCGRG	1 cut(s)	189
AxyI	CCTNAGG	1 cut(s)	581
BalI	TGGCCA	1 cut(s)	866
BamHI	GGATCC	2 cut(s)	268, 904
BanI	GGYRCC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	14, 42
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	761
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	3 cut(s)	87, 245, 594
BfmI	CTRYAG	1 cut(s)	28
BfoI	RGCGCY	1 cut(s)	343
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	3 cut(s)	28, 31, 186
BlsI	GCNGC	3 cut(s)	29, 32, 187
Bme1390I	CCNGG	1 cut(s)	761
BmeT110I	CYCGRG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	3 cut(s)	270, 409, 906
BmrFI	CCNGG	1 cut(s)	761
BmsI	GCATC	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	445, 713
BsaAI	YACGTR	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	727, 759
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 213
Bse21I	CCTNAGG	1 cut(s)	581
Bse3DI	GCAATG	4 cut(s)	218, 779, 782, 835
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	2 cut(s)	727, 759
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	91, 213
BseMI	GCAATG	4 cut(s)	218, 779, 782, 835
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	14, 42
BseYI	CCCAGC	3 cut(s)	342, 488, 820
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	194, 866
BshNI	GGYRCC	1 cut(s)	407
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	599, 616
BslI	CCNNNNNNNGG	2 cut(s)	91, 213
BsmFI	GGGAC	2 cut(s)	599, 616
BsnI	GGCC	2 cut(s)	194, 866
BsoBI	CYCGRG	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	262, 268, 904
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	194, 866
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	270, 409, 906
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	4 cut(s)	263, 276, 899, 912
BspT107I	GGYRCC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	188
BsrDI	GCAATG	4 cut(s)	218, 779, 782, 835
BssECI	CCNNGG	2 cut(s)	727, 759
BssMI	GATC	3 cut(s)	262, 268, 904
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	4 cut(s)	94, 309, 536, 731
Bst6I	CTCTTC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	183, 196, 220
BstDEI	CTNAG	4 cut(s)	6, 273, 364, 581
BstDSI	CCRYGG	1 cut(s)	727
BstFNI	CGCG	1 cut(s)	360
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	2 cut(s)	342, 360
BstKTI	GATC	3 cut(s)	265, 271, 907
BstMBI	GATC	3 cut(s)	262, 268, 904
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	761
BstSCI	CCNGG	1 cut(s)	759
BstSFI	CTRYAG	1 cut(s)	28
BstSNI	TACGTA	1 cut(s)	115
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	14, 42
BstX2I	RGATCY	2 cut(s)	268, 904
BstYI	RGATCY	2 cut(s)	268, 904
Bsu36I	CCTNAGG	1 cut(s)	581
BsuRI	GGCC	2 cut(s)	194, 866
BtgI	CCRYGG	1 cut(s)	727
BtsIMutI	CAGTG	2 cut(s)	282, 541
Cac8I	GCNNGC	3 cut(s)	183, 196, 220
CfoI	GCGC	2 cut(s)	342, 360
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	4 cut(s)	116, 242, 259, 734
CviAII	CATG	1 cut(s)	714
CviQI	GTAC	4 cut(s)	116, 242, 259, 734
DdeI	CTNAG	4 cut(s)	6, 273, 364, 581
DpnI	GATC	3 cut(s)	264, 270, 906
DpnII	GATC	3 cut(s)	262, 268, 904
EaeI	YGGCCR	1 cut(s)	864
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco105I	TACGTA	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	844
Eco47III	AGCGCT	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	759
EcoRV	GATATC	1 cut(s)	844
FaeI	CATG	1 cut(s)	717
FaiI	YATR	9 cut(s)	226, 280, 386, 413, 464, 485, 602, 629, 715
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	2 cut(s)	599, 616
FatI	CATG	1 cut(s)	713
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	28, 31, 186
Fsp4HI	GCNGC	3 cut(s)	28, 31, 186
FspBI	CTAG	3 cut(s)	87, 245, 594
GlaI	GCGC	2 cut(s)	341, 359
GluI	GCNGC	3 cut(s)	28, 31, 186
GsaI	CCCAGC	3 cut(s)	346, 492, 824
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	2 cut(s)	194, 866
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	2 cut(s)	342, 360
Hin1II	CATG	1 cut(s)	717
Hin6I	GCGC	2 cut(s)	340, 358
HinP1I	GCGC	2 cut(s)	340, 358
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	4 cut(s)	41, 802, 809, 833
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	510, 838
Hpy166II	GTNNAC	2 cut(s)	106, 734
Hpy188I	TCNGA	1 cut(s)	886
Hpy188III	TCNNGA	3 cut(s)	266, 322, 806
Hpy8I	GTNNAC	2 cut(s)	106, 734
HpyAV	CCTTC	2 cut(s)	517, 620
HpyCH4III	ACNGT	4 cut(s)	94, 309, 536, 731
HpyCH4IV	ACGT	3 cut(s)	114, 447, 765
HpyCH4V	TGCA	7 cut(s)	30, 501, 539, 667, 772, 777, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	6, 273, 364, 581
HpySE526I	ACGT	3 cut(s)	114, 447, 765
Hsp92II	CATG	1 cut(s)	717
HspAI	GCGC	2 cut(s)	340, 358
Kzo9I	GATC	3 cut(s)	262, 268, 904
Lsp1109I	GCAGC	2 cut(s)	14, 42
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	3 cut(s)	87, 245, 594
MaeII	ACGT	3 cut(s)	114, 447, 765
MalI	GATC	3 cut(s)	264, 270, 906
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	3 cut(s)	262, 268, 904
MboII	GAAGA	2 cut(s)	22, 918
MflI	RGATCY	2 cut(s)	268, 904
MlsI	TGGCCA	1 cut(s)	866
MluCI	AATT	7 cut(s)	122, 331, 652, 668, 697, 709, 875
MluNI	TGGCCA	1 cut(s)	866
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	7 cut(s)	161, 247, 644, 761, 859, 895, 918
Mox20I	TGGCCA	1 cut(s)	866
MroXI	GAANNNNTTC	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	866
MseI	TTAA	3 cut(s)	450, 707, 816
Msp20I	TGGCCA	1 cut(s)	866
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	761
MvaI	CCWGG	1 cut(s)	761
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	3 cut(s)	262, 268, 904
NlaIII	CATG	1 cut(s)	717
NlaIV	GGNNCC	3 cut(s)	270, 409, 906
NmeAIII	GCCGAG	3 cut(s)	277, 374, 823
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	802, 809, 833
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	29, 32, 187
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	115
Psp1406I	AACGTT	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	759
PspFI	CCCAGC	3 cut(s)	342, 488, 820
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	3 cut(s)	270, 409, 906
PspPI	GGNCC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	268, 904
RsaI	GTAC	4 cut(s)	117, 243, 260, 735
RsaNI	GTAC	4 cut(s)	116, 242, 259, 734
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	450, 707, 816
SatI	GCNGC	3 cut(s)	28, 31, 186
Sau3AI	GATC	3 cut(s)	262, 268, 904
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	761
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	424, 692
SmoI	CTYRAG	2 cut(s)	424, 692
SnaBI	TACGTA	1 cut(s)	115
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	7 cut(s)	122, 331, 652, 668, 697, 709, 875
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	3 cut(s)	87, 245, 594
StyD4I	CCNGG	1 cut(s)	759
TaaI	ACNGT	4 cut(s)	94, 309, 536, 731
TaiI	ACGT	3 cut(s)	117, 450, 768
TaqI	TCGA	2 cut(s)	105, 746
TasI	AATT	7 cut(s)	122, 331, 652, 668, 697, 709, 875
TatI	WGTACW	1 cut(s)	733
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	3 cut(s)	802, 809, 833
Tru1I	TTAA	3 cut(s)	450, 707, 816
Tru9I	TTAA	3 cut(s)	450, 707, 816
TscAI	CASTG	2 cut(s)	289, 541
TseI	GCWGC	2 cut(s)	27, 30
TspDTI	ATGAA	5 cut(s)	84, 301, 401, 702, 846
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	2 cut(s)	289, 541
Van91I	CCANNNNNTGG	1 cut(s)	213
XapI	RAATTY	3 cut(s)	697, 709, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	3 cut(s)	87, 245, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.