Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Reverse (-)

30994442 .. 30995420

Gene Structure 979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32271.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGACGCATTACCTGACCTGGTAATCCATGAAATCCTGAAATCTCTATCTACCAAACAAGCCGTCCGGGCTATCATTCTCTCCAAGCAATGGGAACGTGTCTGGTTTTCGGTCCCCGCATTAGATTTCGACGTGGATGAAATAGAGCAACTTGGTGAGGATGATGATCTTCATGCCAACCGTCTTCGTCGACACATAAAGTTCGCCGAGTTTGTAACAATGTGTTTGAAGCGGCGTGAGAAAGATAAATCCTTGCATAGATTGAGGCTTCGGATTCGCATGAGATATCTGTCTTTAGATGAAACATGTAGCTCTCATATTGTGAGAAAGTGTTTGAGATTTGCTATGAATAGACATGTTAAAGAGCTATACCTGGCTGTCATAGATGGCAGCGAGTCATTATTTGTCCTTGGAATAACCTTTCCATCTTTGAAATCTATGTCCCTAAAGCGTGTAAAAGTAAAAGAGTGCGATTTGAGATCCTTTCAGTTAAATTTATGTCCTTCCATTGAGAATCTGTCGATATCCGGATGGTACAACCTTGTTGCAGACATTGAAGTTTCGAGCTCAAGCCTCAAATCCCTGGAATTTATCAGTTTTCCAGAGCGCCACGCTAGGCTTCAAGTTGAAGCTATGAATCTTGAGTCTCTTGGAGTTGGCAGTGAAAAGGGGAAGTCCTGGTCTTCGTACACTATTGATTTTGCTTCTTGCGGACAGCTTAGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

243

Amino Acids

27.92

Weight (kDa)

8.71

Isoelectric Point (pI)

58.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	119 - 222	5.8e-09	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	3 cut(s)	117, 232, 711
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	493, 587
AfaI	GTAC	2 cut(s)	536, 689
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflIII	ACRYGT	3 cut(s)	97, 305, 355
AgsI	TTSAA	5 cut(s)	229, 433, 557, 623, 629
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	4 cut(s)	18, 372, 582, 677
AluBI	AGCT	5 cut(s)	312, 367, 567, 632, 718
AluI	AGCT	5 cut(s)	312, 367, 567, 632, 718
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	1 cut(s)	474
Aor13HI	TCCGGA	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	390
ApoI	RAATTY	2 cut(s)	493, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	569
BbsI	GAAGAC	2 cut(s)	176, 675
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	3 cut(s)	380, 433, 525
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	4 cut(s)	20, 374, 584, 679
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	233, 391
BlsI	GCNGC	2 cut(s)	234, 392
Bme1390I	CCNGG	5 cut(s)	20, 68, 374, 584, 679
Bme18I	GGWCC	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	5 cut(s)	20, 68, 374, 584, 679
BpiI	GAAGAC	2 cut(s)	176, 675
Bpu10I	CCTNAGC	1 cut(s)	719
BpuEI	CTTGAG	2 cut(s)	553, 662
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	409, 582
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	4 cut(s)	20, 374, 584, 679
BseDI	CCNNGG	2 cut(s)	409, 582
BseGI	GGATG	3 cut(s)	142, 166, 536
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	67, 528
BslFI	GGGAC	2 cut(s)	98, 427
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	98, 427
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp13I	TCCGGA	1 cut(s)	527
Bsp143I	GATC	2 cut(s)	166, 479
BspACI	CCGC	3 cut(s)	117, 232, 711
BspEI	TCCGGA	1 cut(s)	527
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	409, 582
BssMI	GATC	2 cut(s)	166, 479
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	4 cut(s)	20, 374, 584, 679
Bst4CI	ACNGT	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	719
BstF5I	GGATG	3 cut(s)	142, 166, 536
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	2 cut(s)	169, 482
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	2 cut(s)	166, 479
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	4 cut(s)	20, 374, 584, 679
BstNSI	RCATGY	2 cut(s)	309, 359
BstSCI	CCNGG	5 cut(s)	18, 66, 372, 582, 677
BstV1I	GCAGC	1 cut(s)	402
BstV2I	GAAGAC	2 cut(s)	176, 675
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	142, 166, 536
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	667
CfoI	GCGC	1 cut(s)	609
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	1 cut(s)	14
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	535, 688
CviAII	CATG	5 cut(s)	29, 173, 280, 306, 356
CviQI	GTAC	2 cut(s)	535, 688
DdeI	CTNAG	1 cut(s)	719
DpnI	GATC	2 cut(s)	168, 481
DpnII	GATC	2 cut(s)	166, 479
Ecl136II	GAGCTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	569
Eco32I	GATATC	2 cut(s)	287, 525
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	567
EcoRII	CCWGG	4 cut(s)	18, 372, 582, 677
EcoRV	GATATC	2 cut(s)	287, 525
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	5 cut(s)	32, 176, 283, 309, 359
FaqI	GGGAC	2 cut(s)	98, 427
FatI	CATG	5 cut(s)	28, 172, 279, 305, 355
FauI	CCCGC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	233, 391
FokI	GGATG	3 cut(s)	149, 173, 543
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	2 cut(s)	233, 391
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	2 cut(s)	233, 391
HaeII	RGCGCY	1 cut(s)	610
HapII	CCGG	2 cut(s)	67, 528
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	5 cut(s)	32, 176, 283, 309, 359
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HinfI	GANTC	5 cut(s)	274, 395, 514, 637, 644
HpaII	CCGG	2 cut(s)	67, 528
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	191, 690
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	4 cut(s)	37, 528, 602, 641
Hpy8I	GTNNAC	2 cut(s)	191, 690
Hpy99I	CGWCG	2 cut(s)	134, 192
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	97, 132
HpyCH4V	TGCA	2 cut(s)	256, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	719
HpySE526I	ACGT	2 cut(s)	97, 132
Hsp92II	CATG	5 cut(s)	32, 176, 283, 309, 359
HspAI	GCGC	1 cut(s)	607
Kpn2I	TCCGGA	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	166, 479
Lsp1109I	GCAGC	1 cut(s)	402
MabI	ACCWGGT	1 cut(s)	18
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	2 cut(s)	97, 132
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	168, 481
MboI	GATC	2 cut(s)	166, 479
MboII	GAAGA	3 cut(s)	161, 176, 675
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	2 cut(s)	493, 587
MlyI	GAGTC	2 cut(s)	404, 653
MnlI	CCTC	3 cut(s)	151, 258, 584
MroI	TCCGGA	1 cut(s)	527
MseI	TTAA	2 cut(s)	360, 491
MspI	CCGG	2 cut(s)	67, 528
MspR9I	CCNGG	5 cut(s)	20, 68, 374, 584, 679
MvaI	CCWGG	4 cut(s)	20, 374, 584, 679
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	166, 479
NlaIII	CATG	5 cut(s)	32, 176, 283, 309, 359
NlaIV	GGNNCC	1 cut(s)	114
NmeAIII	GCCGAG	1 cut(s)	232
NspI	RCATGY	2 cut(s)	309, 359
PciI	ACATGT	2 cut(s)	305, 355
PfeI	GAWTC	3 cut(s)	274, 514, 637
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	234, 392
PleI	GAGTC	2 cut(s)	403, 652
PpsI	GAGTC	2 cut(s)	403, 652
PscI	ACATGT	2 cut(s)	305, 355
Psp124BI	GAGCTC	1 cut(s)	569
Psp6I	CCWGG	4 cut(s)	18, 372, 582, 677
PspGI	CCWGG	4 cut(s)	18, 372, 582, 677
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	479
RsaI	GTAC	2 cut(s)	536, 689
RsaNI	GTAC	2 cut(s)	535, 688
SacI	GAGCTC	1 cut(s)	569
SalI	GTCGAC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	360, 491
SatI	GCNGC	2 cut(s)	233, 391
Sau3AI	GATC	2 cut(s)	166, 479
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	2 cut(s)	404, 653
ScrFI	CCNGG	5 cut(s)	20, 68, 374, 584, 679
SduI	GDGCHC	1 cut(s)	569
SexAI	ACCWGGT	1 cut(s)	18
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	568, 641
SmoI	CTYRAG	2 cut(s)	568, 641
Sse9I	AATT	2 cut(s)	493, 587
SsiI	CCGC	3 cut(s)	117, 232, 711
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	569
StyD4I	CCNGG	5 cut(s)	18, 66, 372, 582, 677
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	2 cut(s)	100, 135
TaqI	TCGA	4 cut(s)	129, 190, 521, 563
TaqII	GACCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	493, 587
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	3 cut(s)	274, 514, 637
Tru1I	TTAA	2 cut(s)	360, 491
Tru9I	TTAA	2 cut(s)	360, 491
TscAI	CASTG	1 cut(s)	667
TseI	GCWGC	1 cut(s)	390
TspDTI	ATGAA	6 cut(s)	45, 153, 161, 315, 362, 650
TspRI	CASTG	1 cut(s)	667
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	493, 587
XceI	RCATGY	2 cut(s)	309, 359
XmiI	GTMKAC	1 cut(s)	190
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.