Rmu_sc0002416.1_g000003

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002416.1
OG0000687
Physical Location & Seq
Forward (+)
13745 .. 16182
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002416.1_g000003.1.cds

Sequence Viewer

Length: 1479 bp
atggactgtgtagaggacaatgatccaactacatttaatcaggccattgaaagtaatgaatctcaccaatggcagctaacaatggaagcagaaattgattccatgagccaaaatgcagaatgggaattagttgaacctaaccccaaacagaaacctatagagttacctgacgttgctatggagcaaatcctcgctggatctctgctttccaccaaaaacactgcccggacatgcattttttctaagcagtggttacgtgtatggcctttgattcctgcattggacattgatgaggatgaggataagaataatgaggatgatgaggatgagcaggcacgccttgcgaaaaaggggattcgacatcaaaggttcatgaacttcttgagcatgtgtttgaagcgatgtgcgaaatataacaacacgttagacaagttcaggcttcgtatgagatactttggtgatcggaactatgatgataatgggatcataatcaggtggttgagttatgctgctgaaagaaacagaaacgttaaagagttagacatctgcttcatatatataccagagttaccggcatacaccccgtaccgcttaccacgaacacttctcagcaacaatgcaggatctttaaccattctaaagttggagaatgtggtgatacagggcagcaatgaccctacgagcttcccatatttgagaactatgtccctcaaactagtggaattcagtagcaacttcgcattcttgcagttaatttccgggtgccctttcatggcttacttgtccctcaagctatgtactggcttgtcacagactcttaaactttctagtttgagcctcgaatccttggaagttatgcattgcggctcagtgcgttttcaaattgaagctacgaatcttaaatcttttaaactacatggagggctgtacagctggggcaacgttgacattgcctcttgtaaaaatgttgagagtctagagttctttgatacatgcttgacagaaacatggcttagaggctttgcttcaacgtttcccctcctggagaatttggttttacatgactactgggaaggacgaaagaaaagtaccaaaatcattccaaacttattggatgctacaatttcaatccatatagggagggagcctagctcgtcttggaatcatcttcgtctgattagatttcttgagaattttgattgctccagaaaattaagtctgcatgctgctgctcctgaggctctcatctttccagaagaagtgagaaggaatccaccattaccaaacctcgagcatcttcaggtagagattagttttacaaccacagtaaagattttctcattgctgatggactccttgcattggatggcaccatctgctgtggtatctatccacagaacagattgcgatccatatccagaaacagaattactcaaaacaataatcggttcatttatgaaaactgatctcggtgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

492

Amino Acids

56.44

Weight (kDa)

5.44

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 762, 1369
AciI CCGC 2 cut(s) 589, 864
AclI AACGTT 3 cut(s) 528, 942, 1031
AclWI GGATC 5 cut(s) 17, 205, 491, 631, 1403
AcsI RAATTY 3 cut(s) 722, 1048, 1192
AcuI CTGAAG 1 cut(s) 1283
AfaI GTAC 4 cut(s) 587, 799, 929, 1090
AfiI CCNNNNNNNGG 2 cut(s) 772, 1362
AflIII ACRYGT 2 cut(s) 256, 420
AgsI TTSAA 7 cut(s) 50, 134, 397, 881, 887, 1029, 1128
AhlI ACTAGT 1 cut(s) 715
AjnI CCWGG 1 cut(s) 1041
AluBI AGCT 6 cut(s) 76, 684, 793, 890, 933, 1152
AluI AGCT 6 cut(s) 76, 684, 793, 890, 933, 1152
AlwI GGATC 5 cut(s) 17, 205, 491, 631, 1403
Ama87I CYCGRG 1 cut(s) 1289
AoxI GGCC 2 cut(s) 42, 263
ApeKI GCWGC 5 cut(s) 73, 509, 666, 1226, 1229
ApoI RAATTY 3 cut(s) 722, 1048, 1192
AsuC2I CCSGG 2 cut(s) 226, 760
AsuHPI GGTGA 3 cut(s) 56, 470, 667
AvaI CYCGRG 1 cut(s) 1289
AxyI CCTNAGG 1 cut(s) 1236
BaeGI GKGCMC 1 cut(s) 767
BaeI ACNNNNGTAYC 2 cut(s) 442, 475
BanI GGYRCC 2 cut(s) 762, 1369
BbvI GCAGC 5 cut(s) 85, 496, 678, 1213, 1216
BccI CCATC 3 cut(s) 1342, 1360, 1381
BciT130I CCWGG 1 cut(s) 1043
BcnI CCSGG 2 cut(s) 226, 760
BcuI ACTAGT 1 cut(s) 715
BfaI CTAG 4 cut(s) 716, 828, 977, 1149
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 6 cut(s) 74, 510, 667, 865, 1227, 1230
BlsI GCNGC 6 cut(s) 75, 511, 668, 866, 1228, 1231
Bme1390I CCNGG 3 cut(s) 226, 760, 1043
BmeT110I CYCGRG 1 cut(s) 1289
BmiI GGNNCC 3 cut(s) 764, 1146, 1371
BmrFI CCNGG 3 cut(s) 226, 760, 1043
BmrI ACTGGG 1 cut(s) 1078
BmsI GCATC 2 cut(s) 1105, 1303
BmuI ACTGGG 1 cut(s) 1078
BplI GAGNNNNNCTC 2 cut(s) 1136, 1168
BpmI CTGGAG 2 cut(s) 1064, 1189
BpuEI CTTGAG 3 cut(s) 403, 773, 1208
BpuMI CCSGG 2 cut(s) 226, 760
BsaAI YACGTR 1 cut(s) 257
BsaBI GATNNNNATC 3 cut(s) 488, 1407, 1413
BsaJI CCNNGG 1 cut(s) 846
Bsc4I CCNNNNNNNGG 2 cut(s) 772, 1362
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 2 cut(s) 805, 1073
Bse21I CCTNAGG 1 cut(s) 1236
Bse3DI GCAATG 4 cut(s) 676, 859, 948, 1340
Bse8I GATNNNNATC 3 cut(s) 488, 1407, 1413
BseBI CCWGG 1 cut(s) 1043
BseDI CCNNGG 1 cut(s) 846
BseGI GGATG 5 cut(s) 301, 322, 331, 1120, 1371
BseJI GATNNNNATC 3 cut(s) 488, 1407, 1413
BseLI CCNNNNNNNGG 2 cut(s) 772, 1362
BseMI GCAATG 4 cut(s) 676, 859, 948, 1340
BseMII CTCAG 3 cut(s) 622, 882, 1227
BseNI ACTGG 2 cut(s) 805, 1073
BseSI GKGCMC 1 cut(s) 767
BseXI GCAGC 5 cut(s) 85, 496, 678, 1213, 1216
BseYI CCCAGC 1 cut(s) 933
BshFI GGCC 2 cut(s) 44, 265
BshNI GGYRCC 2 cut(s) 762, 1369
BsiHKCI CYCGRG 1 cut(s) 1289
BsiSI CCGG 3 cut(s) 226, 572, 759
BslFI GGGAC 2 cut(s) 691, 769
BslI CCNNNNNNNGG 2 cut(s) 772, 1362
BsmFI GGGAC 2 cut(s) 691, 769
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 2 cut(s) 44, 265
BsoBI CYCGRG 1 cut(s) 1289
Bsp1286I GDGCHC 1 cut(s) 767
Bsp1407I TGTACA 1 cut(s) 927
Bsp143I GATC 7 cut(s) 22, 197, 460, 483, 623, 1408, 1465
BspACI CCGC 2 cut(s) 589, 864
BspANI GGCC 2 cut(s) 44, 265
BspCNI CTCAG 3 cut(s) 621, 881, 1228
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 3 cut(s) 764, 1146, 1371
BspPI GGATC 5 cut(s) 17, 205, 491, 631, 1403
BspT107I GGYRCC 2 cut(s) 762, 1369
BsrDI GCAATG 4 cut(s) 676, 859, 948, 1340
BsrFI RCCGGY 1 cut(s) 571
BsrGI TGTACA 1 cut(s) 927
BsrI ACTGG 2 cut(s) 805, 1073
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 846
BssMI GATC 7 cut(s) 22, 197, 460, 483, 623, 1408, 1465
BssT1I CCWWGG 1 cut(s) 846
Bst2UI CCWGG 1 cut(s) 1043
Bst4CI ACNGT 2 cut(s) 8, 1327
BstAPI GCANNNNNTGC 2 cut(s) 341, 1376
BstAUI TGTACA 1 cut(s) 927
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 333, 337, 1224
BstDEI CTNAG 5 cut(s) 243, 608, 868, 1013, 1236
BstF5I GGATG 5 cut(s) 301, 322, 331, 1120, 1371
BstKTI GATC 7 cut(s) 25, 200, 463, 486, 626, 1411, 1468
BstMBI GATC 7 cut(s) 22, 197, 460, 483, 623, 1408, 1465
BstMWI GCNNNNNNNGC 3 cut(s) 341, 1238, 1376
BstNI CCWGG 1 cut(s) 1043
BstNSI RCATGY 4 cut(s) 234, 391, 996, 1226
BstSCI CCNGG 3 cut(s) 224, 758, 1041
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 767
BstV1I GCAGC 5 cut(s) 85, 496, 678, 1213, 1216
BstX2I RGATCY 2 cut(s) 197, 623
BstYI RGATCY 2 cut(s) 197, 623
Bsu36I CCTNAGG 1 cut(s) 1236
BsuRI GGCC 2 cut(s) 44, 265
BtgZI GCGATG 1 cut(s) 415
BtsCI GGATG 5 cut(s) 301, 322, 331, 1120, 1371
BtsI GCAGTG 2 cut(s) 219, 254
BtsIMutI CAGTG 3 cut(s) 219, 254, 876
Cac8I GCNNGC 3 cut(s) 333, 337, 1224
CciI TCATGA 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 571
Csp6I GTAC 4 cut(s) 586, 798, 928, 1089
CviQI GTAC 4 cut(s) 586, 798, 928, 1089
DdeI CTNAG 5 cut(s) 243, 608, 868, 1013, 1236
DpnI GATC 7 cut(s) 24, 199, 462, 485, 625, 1410, 1467
DpnII GATC 7 cut(s) 22, 197, 460, 483, 623, 1408, 1465
DraI TTTAAA 1 cut(s) 910
Eco130I CCWWGG 1 cut(s) 846
Eco57I CTGAAG 1 cut(s) 1283
Eco81I CCTNAGG 1 cut(s) 1236
Eco88I CYCGRG 1 cut(s) 1289
EcoRI GAATTC 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 1041
EcoT14I CCWWGG 1 cut(s) 846
EcoT22I ATGCAT 2 cut(s) 236, 861
ErhI CCWWGG 1 cut(s) 846
FaqI GGGAC 2 cut(s) 691, 769
Fnu4HI GCNGC 6 cut(s) 74, 510, 667, 865, 1227, 1230
FokI GGATG 5 cut(s) 308, 329, 338, 1127, 1378
Fsp4HI GCNGC 6 cut(s) 74, 510, 667, 865, 1227, 1230
FspBI CTAG 4 cut(s) 716, 828, 977, 1149
GluI GCNGC 6 cut(s) 74, 510, 667, 865, 1227, 1230
GsaI CCCAGC 1 cut(s) 937
GsuI CTGGAG 2 cut(s) 1064, 1189
HaeIII GGCC 2 cut(s) 44, 265
HapII CCGG 3 cut(s) 226, 572, 759
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HpaII CCGG 3 cut(s) 226, 572, 759
HphI GGTGA 3 cut(s) 56, 470, 667
Hpy166II GTNNAC 1 cut(s) 946
Hpy188I TCNGA 2 cut(s) 465, 1176
Hpy188III TCNNGA 8 cut(s) 373, 382, 977, 1187, 1206, 1235, 1253, 1418
Hpy8I GTNNAC 1 cut(s) 946
HpyAV CCTTC 2 cut(s) 1067, 1260
HpyCH4III ACNGT 2 cut(s) 8, 1327
HpyCH4IV ACGT 6 cut(s) 171, 256, 422, 528, 942, 1031
HpyCH4V TGCA 8 cut(s) 116, 234, 278, 620, 748, 859, 1222, 1360
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 1238, 1376
HpyF3I CTNAG 5 cut(s) 243, 608, 868, 1013, 1236
HpySE526I ACGT 6 cut(s) 171, 256, 422, 528, 942, 1031
Kzo9I GATC 7 cut(s) 22, 197, 460, 483, 623, 1408, 1465
LmnI GCTCC 4 cut(s) 181, 1144, 1208, 1237
Lsp1109I GCAGC 5 cut(s) 85, 496, 678, 1213, 1216
LweI GCATC 2 cut(s) 1105, 1303
MaeI CTAG 4 cut(s) 716, 828, 977, 1149
MaeII ACGT 6 cut(s) 171, 256, 422, 528, 942, 1031
MaeIII GTNAC 4 cut(s) 162, 252, 567, 807
MalI GATC 7 cut(s) 24, 199, 462, 485, 625, 1410, 1467
MboI GATC 7 cut(s) 22, 197, 460, 483, 623, 1408, 1465
MboII GAAGA 3 cut(s) 1160, 1268, 1289
MflI RGATCY 2 cut(s) 197, 623
MhlI GDGCHC 1 cut(s) 767
MlyI GAGTC 3 cut(s) 808, 982, 1346
MmeI TCCRAC 2 cut(s) 50, 624
Mph1103I ATGCAT 2 cut(s) 236, 861
MseI TTAA 8 cut(s) 36, 531, 629, 752, 819, 900, 909, 1214
MspA1I CMGCKG 1 cut(s) 933
MspI CCGG 3 cut(s) 226, 572, 759
MspR9I CCNGG 3 cut(s) 226, 760, 1043
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 1 cut(s) 1043
MwoI GCNNNNNNNGC 3 cut(s) 341, 1238, 1376
NciI CCSGG 2 cut(s) 226, 760
NdeII GATC 7 cut(s) 22, 197, 460, 483, 623, 1408, 1465
NlaIV GGNNCC 3 cut(s) 764, 1146, 1371
NmuCI GTSAC 1 cut(s) 807
NsiI ATGCAT 2 cut(s) 236, 861
NspI RCATGY 4 cut(s) 234, 391, 996, 1226
PaeI GCATGC 1 cut(s) 1226
PaeR7I CTCGAG 1 cut(s) 1289
PagI TCATGA 1 cut(s) 372
PctI GAATGC 1 cut(s) 740
PfeI GAWTC 8 cut(s) 59, 98, 271, 355, 842, 895, 1162, 1270
PfoI TCCNGGA 1 cut(s) 1041
PkrI GCNGC 6 cut(s) 75, 511, 668, 866, 1228, 1231
PleI GAGTC 3 cut(s) 808, 981, 1346
PpsI GAGTC 3 cut(s) 808, 981, 1346
Ppu21I YACGTR 1 cut(s) 257
Psp1406I AACGTT 3 cut(s) 528, 942, 1031
Psp6I CCWGG 1 cut(s) 1041
PspFI CCCAGC 1 cut(s) 933
PspGI CCWGG 1 cut(s) 1041
PspN4I GGNNCC 3 cut(s) 764, 1146, 1371
PspXI VCTCGAGB 1 cut(s) 1289
PsuI RGATCY 2 cut(s) 197, 623
PvuII CAGCTG 1 cut(s) 933
RsaI GTAC 4 cut(s) 587, 799, 929, 1090
RsaNI GTAC 4 cut(s) 586, 798, 928, 1089
SaqAI TTAA 8 cut(s) 36, 531, 629, 752, 819, 900, 909, 1214
SatI GCNGC 6 cut(s) 74, 510, 667, 865, 1227, 1230
Sau3AI GATC 7 cut(s) 22, 197, 460, 483, 623, 1408, 1465
SchI GAGTC 3 cut(s) 808, 982, 1346
ScrFI CCNGG 3 cut(s) 226, 760, 1043
SduI GDGCHC 1 cut(s) 767
SfaNI GCATC 2 cut(s) 1105, 1303
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 1289
SlaI CTCGAG 1 cut(s) 1289
SmlI CTYRAG 4 cut(s) 382, 788, 1187, 1289
SmoI CTYRAG 4 cut(s) 382, 788, 1187, 1289
SpeI ACTAGT 1 cut(s) 715
SphI GCATGC 1 cut(s) 1226
SsiI CCGC 2 cut(s) 589, 864
SspMI CTAG 4 cut(s) 716, 828, 977, 1149
StyD4I CCNGG 3 cut(s) 224, 758, 1041
StyI CCWWGG 1 cut(s) 846
TaaI ACNGT 2 cut(s) 8, 1327
TaiI ACGT 6 cut(s) 174, 259, 425, 531, 945, 1034
TaqI TCGA 3 cut(s) 358, 840, 1290
TatI WGTACW 2 cut(s) 797, 927
TauI GCSGC 1 cut(s) 867
TfiI GAWTC 8 cut(s) 59, 98, 271, 355, 842, 895, 1162, 1270
Tru1I TTAA 8 cut(s) 36, 531, 629, 752, 819, 900, 909, 1214
Tru9I TTAA 8 cut(s) 36, 531, 629, 752, 819, 900, 909, 1214
TscAI CASTG 3 cut(s) 226, 254, 876
TseFI GTSAC 1 cut(s) 807
TseI GCWGC 5 cut(s) 73, 509, 666, 1226, 1229
Tsp45I GTSAC 1 cut(s) 807
TspDTI ATGAA 7 cut(s) 72, 361, 389, 541, 760, 1440, 1472
TspRI CASTG 3 cut(s) 226, 254, 876
XapI RAATTY 3 cut(s) 722, 1048, 1192
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 4 cut(s) 234, 391, 996, 1226
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XhoI CTCGAG 1 cut(s) 1289
XspI CTAG 4 cut(s) 716, 828, 977, 1149
Zsp2I ATGCAT 2 cut(s) 236, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.