Rmu_sc0008565.1_g000002

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008565.1
OG0000687
Physical Location & Seq
Forward (+)
7586 .. 8902
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008565.1_g000002.1.cds

Sequence Viewer

Length: 1317 bp
atggacacatacacagctgagttacccgacaatttcatccaccaagtcctctctctcctttccaccaaacacgccgtccgggccggcattctttcgaaggaatgggggcacttatggtcttcggttcctgtgttagatttcgacgaggatgaggatgggcagccatctgctgataaccgtaagcttaaacgaaaaatgttcatcaacttcatgagaaggtgcttgaagcgccgtggaaaagatgagtctaacattgagaagtttaggcttcacatgaggtactttggaggtgctactattgtaagcaagtggttgagtttagcggttgagagaaatgttaaagagctacaaatctcctttataagaggaagagaatccggggtgagatcttacagacccttcttcttaccacaagcaattctcaacaatgcaaaatccttaaccaccctaaagttgcagagtgtgactgtgaaggacagcattgaccctataaaccttccttctttgaaaattttgtccctaaaacaagtgcaattcaggagtaccttgtcattcatgcacttaatttccggatgcccttctcttgagcatttcttgttaacttcgtgcaccggcctctcggatcttaagattttgagtttgagcctcaaatccttggaagttgttgactgcgacgtgcggggtattcaagttgaagctgagaatctcgaatcttttaagtttcatggaaacgtttttagccggtatatgtggcacttctttaacattttctcatgtcaaagagttagaagcatagagttctctgacatattcttgaaaagcgaatggtgtgaaggcttcagttcgagttttcccctgctcgagagtttgattttgcataaatgcaactggcagtactgggaacacataaaaatctttagccagaacctgaaacgttttgtattttctgattcagaacccatcaagcctttcttttctttgaactttccaaatttatcggaggctagaatcgacctcttgtatagaccagcagaccccccaggtccctttccatgggaatatttctaccatctgaaaaagtgtcttgaaaattttaattgctctagaaaagtaattctatatgttacgagggcggagctatgtacttttccagagcggataagaaacggattcaccccaccattgcctagtctcaagcatcttgatgtagagatcggtacttctataactgaagtgacacattctgccttaatggactccttgaattggatggcaccagcgtctcgagtttcgatccataaaacaacatttgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

438

Amino Acids

50.74

Weight (kDa)

8.97

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 1273
AccBSI CCGCTC 1 cut(s) 1156
AccIII TCCGGA 1 cut(s) 569
AciI CCGC 4 cut(s) 323, 679, 1133, 1156
AclI AACGTT 2 cut(s) 732, 934
AclWI GGATC 2 cut(s) 630, 1288
AcsI RAATTY 3 cut(s) 510, 991, 1090
AcuI CTGAAG 2 cut(s) 823, 1251
AfaI GTAC 5 cut(s) 281, 544, 896, 1144, 1219
AfiI CCNNNNNNNGG 2 cut(s) 1053, 1266
AflII CTTAAG 1 cut(s) 626
AgsI TTSAA 8 cut(s) 226, 508, 689, 695, 817, 982, 1088, 1264
AjiI CACGTC 1 cut(s) 676
AjnI CCWGG 1 cut(s) 1039
AluBI AGCT 5 cut(s) 17, 184, 346, 698, 1138
AluI AGCT 5 cut(s) 17, 184, 346, 698, 1138
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 2 cut(s) 1196, 1287
Alw44I GTGCAC 1 cut(s) 607
AlwI GGATC 2 cut(s) 630, 1288
AlwNI CAGNNNCTG 1 cut(s) 928
Ama87I CYCGRG 2 cut(s) 860, 1284
Aor13HI TCCGGA 1 cut(s) 569
AoxI GGCC 2 cut(s) 81, 613
ApaLI GTGCAC 1 cut(s) 607
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 3 cut(s) 510, 991, 1090
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 81, 1043
AsuC2I CCSGG 2 cut(s) 80, 379
AsuHPI GGTGA 2 cut(s) 394, 1165
AsuII TTCGAA 1 cut(s) 95
AvaI CYCGRG 2 cut(s) 860, 1284
AvaII GGWCC 1 cut(s) 1043
BaeGI GKGCMC 2 cut(s) 111, 611
BanI GGYRCC 1 cut(s) 1273
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 1 cut(s) 172
BccI CCATC 5 cut(s) 149, 172, 968, 1077, 1264
BceAI ACGGC 2 cut(s) 59, 216
BciT130I CCWGG 1 cut(s) 1041
BcnI CCSGG 2 cut(s) 80, 379
BcoDI GTCTC 2 cut(s) 1196, 1287
BfaI CTAG 3 cut(s) 1005, 1104, 1188
BfoI RGCGCY 1 cut(s) 232
BfrI CTTAAG 1 cut(s) 626
BglI GCCNNNNNGGC 1 cut(s) 80
BglII AGATCT 1 cut(s) 386
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmcAI AGTACT 1 cut(s) 896
Bme1390I CCNGG 3 cut(s) 80, 379, 1041
Bme18I GGWCC 1 cut(s) 1043
BmeT110I CYCGRG 2 cut(s) 860, 1284
BmgBI CACGTC 1 cut(s) 676
BmgT120I GGNCC 2 cut(s) 81, 1043
BmiI GGNNCC 3 cut(s) 126, 1045, 1275
BmrFI CCNGG 3 cut(s) 80, 379, 1041
BmrI ACTGGG 1 cut(s) 907
BmsI GCATC 2 cut(s) 563, 1207
BmuI ACTGGG 1 cut(s) 907
BpiI GAAGAC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 95
BpuEI CTTGAG 2 cut(s) 605, 1178
BpuMI CCSGG 2 cut(s) 80, 379
BsaJI CCNNGG 5 cut(s) 232, 378, 654, 1039, 1052
BsaWI WCCGGW 1 cut(s) 569
Bsc4I CCNNNNNNNGG 2 cut(s) 1053, 1266
Bse118I RCCGGY 3 cut(s) 83, 611, 741
Bse1I ACTGG 2 cut(s) 893, 902
Bse3DI GCAATG 1 cut(s) 1181
BseAI TCCGGA 1 cut(s) 569
BseBI CCWGG 1 cut(s) 1041
BseDI CCNNGG 5 cut(s) 232, 378, 654, 1039, 1052
BseGI GGATG 5 cut(s) 36, 154, 160, 578, 1275
BseLI CCNNNNNNNGG 2 cut(s) 1053, 1266
BseMI GCAATG 1 cut(s) 1181
BseMII CTCAG 2 cut(s) 9, 690
BseNI ACTGG 2 cut(s) 893, 902
BseSI GKGCMC 2 cut(s) 111, 611
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 83, 615
BshNI GGYRCC 1 cut(s) 1273
BsiHKAI GWGCWC 1 cut(s) 611
BsiHKCI CYCGRG 2 cut(s) 860, 1284
BsiSI CCGG 6 cut(s) 79, 84, 378, 570, 612, 742
BslFI GGGAC 2 cut(s) 502, 1029
BslI CCNNNNNNNGG 2 cut(s) 1053, 1266
BsmAI GTCTC 2 cut(s) 1196, 1287
BsmBI CGTCTC 1 cut(s) 1287
BsmFI GGGAC 2 cut(s) 502, 1029
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 2 cut(s) 83, 615
BsoBI CYCGRG 2 cut(s) 860, 1284
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 111, 611
Bsp13I TCCGGA 1 cut(s) 569
Bsp143I GATC 4 cut(s) 386, 622, 1212, 1293
Bsp19I CCATGG 1 cut(s) 1052
BspACI CCGC 4 cut(s) 323, 679, 1133, 1156
BspANI GGCC 2 cut(s) 83, 615
BspCNI CTCAG 2 cut(s) 10, 691
BspEI TCCGGA 1 cut(s) 569
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 3 cut(s) 126, 1045, 1275
BspPI GGATC 2 cut(s) 630, 1288
BspT104I TTCGAA 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 1273
BspTI CTTAAG 1 cut(s) 626
BsrBI CCGCTC 1 cut(s) 1156
BsrDI GCAATG 1 cut(s) 1181
BsrFI RCCGGY 3 cut(s) 83, 611, 741
BsrI ACTGG 2 cut(s) 893, 902
BssAI RCCGGY 3 cut(s) 83, 611, 741
BssECI CCNNGG 5 cut(s) 232, 378, 654, 1039, 1052
BssMI GATC 4 cut(s) 386, 622, 1212, 1293
BssT1I CCWWGG 2 cut(s) 654, 1052
Bst2UI CCWGG 1 cut(s) 1041
Bst4CI ACNGT 2 cut(s) 179, 469
Bst6I CTCTTC 1 cut(s) 364
BstAFI CTTAAG 1 cut(s) 626
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 18, 699, 1314
BstDSI CCRYGG 2 cut(s) 232, 1052
BstF5I GGATG 5 cut(s) 36, 154, 160, 578, 1275
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 4 cut(s) 389, 625, 1215, 1296
BstMAI GTCTC 2 cut(s) 1196, 1287
BstMBI GATC 4 cut(s) 386, 622, 1212, 1293
BstMWI GCNNNNNNNGC 2 cut(s) 80, 228
BstNI CCWGG 1 cut(s) 1041
BstSCI CCNGG 3 cut(s) 78, 377, 1039
BstSLI GKGCMC 2 cut(s) 111, 611
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 2 cut(s) 386, 622
BstYI RGATCY 2 cut(s) 386, 622
BsuRI GGCC 2 cut(s) 83, 615
BtgI CCRYGG 2 cut(s) 232, 1052
BtrI CACGTC 1 cut(s) 676
BtsCI GGATG 5 cut(s) 36, 154, 160, 578, 1275
Cac8I GCNNGC 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 928
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 3 cut(s) 83, 611, 741
Cfr13I GGNCC 2 cut(s) 81, 1043
CseI GACGC 1 cut(s) 1269
Csp6I GTAC 5 cut(s) 280, 543, 895, 1143, 1218
CviAII CATG 6 cut(s) 211, 274, 556, 725, 774, 1053
CviQI GTAC 5 cut(s) 280, 543, 895, 1143, 1218
DdeI CTNAG 3 cut(s) 18, 699, 1314
DpnI GATC 4 cut(s) 388, 624, 1214, 1295
DpnII GATC 4 cut(s) 386, 622, 1212, 1293
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
EciI GGCGGA 1 cut(s) 1148
Eco130I CCWWGG 2 cut(s) 654, 1052
Eco47I GGWCC 1 cut(s) 1043
Eco57I CTGAAG 2 cut(s) 823, 1251
Eco88I CYCGRG 2 cut(s) 860, 1284
EcoO109I RGGNCCY 1 cut(s) 1043
EcoRII CCWGG 1 cut(s) 1039
EcoT14I CCWWGG 2 cut(s) 654, 1052
ErhI CCWWGG 2 cut(s) 654, 1052
Esp3I CGTCTC 1 cut(s) 1287
FaeI CATG 6 cut(s) 214, 277, 559, 728, 777, 1056
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FaqI GGGAC 2 cut(s) 502, 1029
FatI CATG 6 cut(s) 210, 273, 555, 724, 773, 1052
FauI CCCGC 1 cut(s) 672
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 5 cut(s) 23, 161, 167, 585, 1282
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 3 cut(s) 1005, 1104, 1188
GlaI GCGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 2 cut(s) 83, 615
HapII CCGG 6 cut(s) 79, 84, 378, 570, 612, 742
HgaI GACGC 1 cut(s) 1269
HhaI GCGC 1 cut(s) 231
Hin1II CATG 6 cut(s) 214, 277, 559, 728, 777, 1056
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 2 cut(s) 600, 667
HindII GTYRAC 2 cut(s) 600, 667
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 8 cut(s) 245, 374, 703, 710, 950, 1008, 1170, 1256
HpaI GTTAAC 1 cut(s) 600
HpaII CCGG 6 cut(s) 79, 84, 378, 570, 612, 742
HphI GGTGA 2 cut(s) 394, 1165
Hpy166II GTNNAC 3 cut(s) 600, 609, 667
Hpy188I TCNGA 6 cut(s) 622, 805, 949, 955, 1000, 1074
Hpy8I GTNNAC 3 cut(s) 600, 609, 667
Hpy99I CGWCG 2 cut(s) 146, 677
HpyAV CCTTC 8 cut(s) 91, 210, 409, 466, 506, 510, 588, 827
HpyCH4III ACNGT 2 cut(s) 179, 469
HpyCH4IV ACGT 3 cut(s) 675, 732, 934
HpyCH4V TGCA 7 cut(s) 431, 457, 532, 559, 609, 877, 885
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 228
HpyF3I CTNAG 3 cut(s) 18, 699, 1314
HpySE526I ACGT 3 cut(s) 675, 732, 934
Hsp92II CATG 6 cut(s) 214, 277, 559, 728, 777, 1056
HspAI GCGC 1 cut(s) 229
Kpn2I TCCGGA 1 cut(s) 569
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
KspAI GTTAAC 1 cut(s) 600
Kzo9I GATC 4 cut(s) 386, 622, 1212, 1293
LmnI GCTCC 1 cut(s) 1135
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 563, 1207
MaeI CTAG 3 cut(s) 1005, 1104, 1188
MaeII ACGT 3 cut(s) 675, 732, 934
MaeIII GTNAC 4 cut(s) 21, 463, 1123, 1234
MalI GATC 4 cut(s) 388, 624, 1214, 1295
MbiI CCGCTC 1 cut(s) 1156
MboI GATC 4 cut(s) 386, 622, 1212, 1293
MboII GAAGA 3 cut(s) 111, 381, 394
MflI RGATCY 2 cut(s) 386, 622
MhlI GDGCHC 2 cut(s) 111, 611
MlyI GAGTC 2 cut(s) 254, 1250
MroI TCCGGA 1 cut(s) 569
MroNI GCCGGC 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 1203
MspA1I CMGCKG 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 626
MspI CCGG 6 cut(s) 79, 84, 378, 570, 612, 742
MspR9I CCNGG 3 cut(s) 80, 379, 1041
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 1041
MwoI GCNNNNNNNGC 2 cut(s) 80, 228
NaeI GCCGGC 1 cut(s) 85
NciI CCSGG 2 cut(s) 80, 379
NcoI CCATGG 1 cut(s) 1052
NdeII GATC 4 cut(s) 386, 622, 1212, 1293
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 6 cut(s) 214, 277, 559, 728, 777, 1056
NlaIV GGNNCC 3 cut(s) 126, 1045, 1275
NmuCI GTSAC 2 cut(s) 463, 1234
NspV TTCGAA 1 cut(s) 95
PaeR7I CTCGAG 2 cut(s) 860, 1284
PagI TCATGA 1 cut(s) 210
PctI GAATGC 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 6 cut(s) 374, 703, 710, 950, 1008, 1170
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 2 cut(s) 253, 1250
PpsI GAGTC 2 cut(s) 253, 1250
PpuMI RGGWCCY 1 cut(s) 1043
PsiI TTATAA 1 cut(s) 362
Psp1406I AACGTT 2 cut(s) 732, 934
Psp5II RGGWCCY 1 cut(s) 1043
Psp6I CCWGG 1 cut(s) 1039
PspGI CCWGG 1 cut(s) 1039
PspN4I GGNNCC 3 cut(s) 126, 1045, 1275
PspPI GGNCC 2 cut(s) 81, 1043
PspPPI RGGWCCY 1 cut(s) 1043
PstNI CAGNNNCTG 1 cut(s) 928
PsuI RGATCY 2 cut(s) 386, 622
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 5 cut(s) 281, 544, 896, 1144, 1219
RsaNI GTAC 5 cut(s) 280, 543, 895, 1143, 1218
RseI CAYNNNNRTG 1 cut(s) 1203
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 4 cut(s) 386, 622, 1212, 1293
Sau96I GGNCC 2 cut(s) 81, 1043
ScaI AGTACT 1 cut(s) 896
SchI GAGTC 2 cut(s) 254, 1250
ScrFI CCNGG 3 cut(s) 80, 379, 1041
SduI GDGCHC 2 cut(s) 111, 611
SfaNI GCATC 2 cut(s) 563, 1207
Sfr274I CTCGAG 2 cut(s) 860, 1284
SfuI TTCGAA 1 cut(s) 95
SinI GGWCC 1 cut(s) 1043
SlaI CTCGAG 2 cut(s) 860, 1284
SmiMI CAYNNNNRTG 1 cut(s) 1203
SmlI CTYRAG 5 cut(s) 584, 626, 860, 1193, 1284
SmoI CTYRAG 5 cut(s) 584, 626, 860, 1193, 1284
SsiI CCGC 4 cut(s) 323, 679, 1133, 1156
SspI AATATT 1 cut(s) 1061
SspMI CTAG 3 cut(s) 1005, 1104, 1188
StyD4I CCNGG 3 cut(s) 78, 377, 1039
StyI CCWWGG 2 cut(s) 654, 1052
TaaI ACNGT 2 cut(s) 179, 469
TaiI ACGT 3 cut(s) 678, 735, 937
TaqI TCGA 8 cut(s) 95, 141, 708, 845, 861, 1011, 1285, 1292
TatI WGTACW 2 cut(s) 894, 1142
TfiI GAWTC 6 cut(s) 374, 703, 710, 950, 1008, 1170
TseFI GTSAC 2 cut(s) 463, 1234
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 2 cut(s) 463, 1234
TspDTI ATGAA 5 cut(s) 25, 190, 199, 544, 713
TspGWI ACGGA 1 cut(s) 1182
Vha464I CTTAAG 1 cut(s) 626
VneI GTGCAC 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 1043
XapI RAATTY 3 cut(s) 510, 991, 1090
XbaI TCTAGA 1 cut(s) 1103
XhoI CTCGAG 2 cut(s) 860, 1284
XspI CTAG 3 cut(s) 1005, 1104, 1188
ZrmI AGTACT 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.