Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Forward (+)

80254813 .. 80255472

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG586900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGAAGCTCTTGGTTTGAAGACTTGGATTTAAGATTTCCCCACCTTGAAAGATTGATTTTACACCAATGCTGGGCACCCCTTGGGGAACGTATCAAGATCTCTAGTGAGCATCTAAAATATTTTCTACTTTTTAGTGCTTCTTCGATGTTGGGCTTATTGTGCGTGTCTACAAATTTTCCAAATTTATCGGAGGCTGTAATCATACTTGGGTCTAACGTGTCCCATCAGATCAGCATGGATCCCATCAGAAGGATGCTTCAACTAAGAGATTTTCTTGGACAGTTTGATTGCTCAAGAAAAGTAAGTCTACATGTTTCCGACGCTGAGACTCTTATCTTTGAAGAAGATATAAGGAAGACACCTTCACCATTGCCAAATATCAAGCATCTCAAGGTAGAGTTAAGCACTGATACAACAACAGTAACACATACTGAATTGATACGCTCCTTACTTTGGATGGCGCCCTCATCTATCAAGTTTCTATCAGTAAAACAAAATTCAGGGCTTCTCTTTGAATTTAAACAGAAGGATTGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

180

Amino Acids

20.69

Weight (kDa)

7.05

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	76, 463
AccI	GTMKAC	2 cut(s)	170, 310
AclWI	GGATC	2 cut(s)	236, 249
AcsI	RAATTY	4 cut(s)	175, 184, 499, 518
AcyI	GRCGYC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	73, 252, 456
AflIII	ACRYGT	2 cut(s)	219, 313
AgsI	TTSAA	5 cut(s)	20, 50, 263, 344, 518
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	236, 249
ApoI	RAATTY	4 cut(s)	175, 184, 499, 518
AspLEI	GCGC	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	2 cut(s)	76, 463
BbsI	GAAGAC	2 cut(s)	27, 365
BccI	CCATC	3 cut(s)	234, 254, 454
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	467
BglII	AGATCT	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	78, 243, 465
BmsI	GCATC	3 cut(s)	121, 246, 397
BpiI	GAAGAC	2 cut(s)	27, 365
BpuEI	CTTGAG	2 cut(s)	280, 377
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 252, 456
Bse3DI	GCAATG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	261, 465
BseLI	CCNNNNNNNGG	3 cut(s)	73, 252, 456
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	318
BseSI	GKGCMC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	72
BshNI	GGYRCC	2 cut(s)	76, 463
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	3 cut(s)	73, 252, 456
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	99, 231, 241
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	78, 243, 465
BspPI	GGATC	2 cut(s)	236, 249
BspT107I	GGYRCC	2 cut(s)	76, 463
BsrDI	GCAATG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	99, 231, 241
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	285, 424
BstACI	GRCGYC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	266, 327
BstF5I	GGATG	2 cut(s)	261, 465
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	3 cut(s)	102, 234, 244
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	3 cut(s)	99, 231, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	79
BstV2I	GAAGAC	2 cut(s)	27, 365
BstX2I	RGATCY	2 cut(s)	99, 241
BstYI	RGATCY	2 cut(s)	99, 241
BtsCI	GGATG	2 cut(s)	261, 465
BtsIMutI	CAGTG	1 cut(s)	408
CfoI	GCGC	1 cut(s)	466
CseI	GACGC	1 cut(s)	332
CviAII	CATG	2 cut(s)	238, 314
CviJI	RGCY	4 cut(s)	9, 156, 197, 508
CviKI_1	RGCY	4 cut(s)	9, 156, 197, 508
DdeI	CTNAG	2 cut(s)	266, 327
DinI	GGCGCC	1 cut(s)	465
DpnI	GATC	3 cut(s)	101, 233, 243
DpnII	GATC	3 cut(s)	99, 231, 241
DraI	TTTAAA	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	82
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	241, 317
FaiI	YATR	5 cut(s)	206, 239, 315, 353, 432
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	237, 313
FblI	GTMKAC	2 cut(s)	170, 310
FokI	GGATG	2 cut(s)	268, 472
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	465
GsaI	CCCAGC	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	467
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	2 cut(s)	241, 317
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	1 cut(s)	331
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	171, 311
Hpy188I	TCNGA	4 cut(s)	193, 231, 251, 322
Hpy188III	TCNNGA	2 cut(s)	97, 297
Hpy8I	GTNNAC	2 cut(s)	171, 311
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	3 cut(s)	246, 375, 523
HpyCH4III	ACNGT	2 cut(s)	285, 424
HpyCH4IV	ACGT	2 cut(s)	91, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	266, 327
HpySE526I	ACGT	2 cut(s)	91, 219
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	2 cut(s)	241, 317
HspAI	GCGC	1 cut(s)	464
KasI	GGCGCC	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	99, 231, 241
LmnI	GCTCC	1 cut(s)	452
LpnPI	CCDG	2 cut(s)	58, 489
LweI	GCATC	3 cut(s)	121, 246, 397
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	2 cut(s)	91, 219
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	101, 233, 243
MboI	GATC	3 cut(s)	99, 231, 241
MboII	GAAGA	5 cut(s)	32, 135, 356, 359, 370
MflI	RGATCY	2 cut(s)	99, 241
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	5 cut(s)	175, 184, 437, 499, 518
Mly113I	GGCGCC	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	2 cut(s)	187, 478
MseI	TTAA	4 cut(s)	32, 404, 522, 541
MwoI	GCNNNNNNNGC	1 cut(s)	162
NarI	GGCGCC	1 cut(s)	464
NdeII	GATC	3 cut(s)	99, 231, 241
NlaIII	CATG	2 cut(s)	241, 317
NlaIV	GGNNCC	3 cut(s)	78, 243, 465
NspI	RCATGY	1 cut(s)	317
PciI	ACATGT	1 cut(s)	313
PleI	GAGTC	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	72
PspN4I	GGNNCC	3 cut(s)	78, 243, 465
PsuI	RGATCY	2 cut(s)	99, 241
SaqAI	TTAA	4 cut(s)	32, 404, 522, 541
Sau3AI	GATC	3 cut(s)	99, 231, 241
SchI	GAGTC	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	11, 48, 94, 222, 367, 399
SfaNI	GCATC	3 cut(s)	121, 246, 397
SfoI	GGCGCC	1 cut(s)	465
SmlI	CTYRAG	2 cut(s)	295, 392
SmoI	CTYRAG	2 cut(s)	295, 392
Sse9I	AATT	5 cut(s)	175, 184, 437, 499, 518
SspDI	GGCGCC	1 cut(s)	463
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	285, 424
TaiI	ACGT	2 cut(s)	94, 222
TaqI	TCGA	1 cut(s)	146
TasI	AATT	5 cut(s)	175, 184, 437, 499, 518
Tru1I	TTAA	4 cut(s)	32, 404, 522, 541
Tru9I	TTAA	4 cut(s)	32, 404, 522, 541
TscAI	CASTG	1 cut(s)	415
TspRI	CASTG	1 cut(s)	415
XapI	RAATTY	4 cut(s)	175, 184, 499, 518
XceI	RCATGY	1 cut(s)	317
XmiI	GTMKAC	2 cut(s)	170, 310
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.