Rh4AG382300

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000687
Physical Location & Seq
Reverse (-)
68888118 .. 68889927
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG382300.1

Sequence Viewer

Length: 711 bp
ATGGGGATGGTAGTCTGGTACAGCTTGTCAGCAAAAATTGAAATTTCGAGTTCAAGCCTCAAAGCCTTGGAAGTTATCAGTTTTGCGGAGCGCCGGACTAGGCTTCAAGTGGAAGCTATGAATCTTGAATCCCTTGGAGTTGGTGGTAAAGCGGATAAGGCGCGGTCTTGTTCTTGGTACGACATTGATTTTGCATCTTGTGGGCAGCTTAGGAATTTAGAGTTGTTTGGTGCAATCTTTAAAGGTGTATGTGTCAAAGAGTTCAGATCACGATTTCCACTTCTTGAGAGTTTGATCTTTTATAGTTGCTACTTTGGAGAACATATCGAGCTCGTTAGTCAGCATCTGAAACGCTTTGTTCTGGGCCGATGCAAGTCTATTAAGAATGCCATAATTGATACTCCAAATCTAAGATCATTTTGGTTCGATGGTCCGACAGACAAGTGTACCTTTTGTGTCGATGCTCCAAAGTTGTCCAAGACTACAATCATAACTGGTGACGATTGGTGGCCTTGGAATTATTCTATCTGTAACTTTCTTGCAAATTTGGCTTCCTCAGAAAAAGTGACTCTATATGCAGAGTATCCTCCGGTGTATATGTGTATTCAATTGTATATGCAGTCCCTAATTTTAATCAGTTTCCGATTTATATATATGTGGTATTTCAACTTGTTGATTTCCTGTTATTGTTGTGGTGCATTAATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

236

Amino Acids

27.11

Weight (kDa)

8.21

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 163
AciI CCGC 3 cut(s) 86, 152, 163
AcsI RAATTY 3 cut(s) 42, 214, 544
AfaI GTAC 3 cut(s) 20, 179, 448
AgsI TTSAA 6 cut(s) 41, 54, 107, 128, 608, 667
AluBI AGCT 4 cut(s) 24, 116, 208, 331
AluI AGCT 4 cut(s) 24, 116, 208, 331
Alw21I GWGCWC 1 cut(s) 333
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 2 cut(s) 364, 509
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 3 cut(s) 42, 214, 544
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AseI ATTAAT 1 cut(s) 701
AspLEI GCGC 2 cut(s) 93, 163
AspS9I GGNCC 2 cut(s) 364, 431
AsuHPI GGTGA 1 cut(s) 509
AvaII GGWCC 1 cut(s) 431
BaeI ACNNNNGTAYC 2 cut(s) 430, 463
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 422
BciVI GTATCC 1 cut(s) 594
BfaI CTAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 94
BfuI GTATCC 1 cut(s) 594
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 2 cut(s) 364, 431
BmsI GCATC 4 cut(s) 203, 352, 359, 451
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 66, 133, 512
BsaWI WCCGGW 1 cut(s) 589
Bse1I ACTGG 1 cut(s) 499
BseDI CCNNGG 3 cut(s) 66, 133, 512
BseGI GGATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 1 cut(s) 499
BseXI GCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 366, 511
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 94, 590
BslFI GGGAC 1 cut(s) 607
BsmFI GGGAC 1 cut(s) 607
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 366, 511
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 3 cut(s) 266, 294, 413
BspACI CCGC 3 cut(s) 86, 152, 163
BspANI GGCC 2 cut(s) 366, 511
BspCNI CTCAG 1 cut(s) 569
BspFNI CGCG 1 cut(s) 163
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 3 cut(s) 66, 133, 512
BssMI GATC 3 cut(s) 266, 294, 413
BssT1I CCWWGG 3 cut(s) 66, 133, 512
BstDEI CTNAG 3 cut(s) 209, 410, 556
BstF5I GGATG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 2 cut(s) 93, 163
BstKTI GATC 3 cut(s) 269, 297, 416
BstMBI GATC 3 cut(s) 266, 294, 413
BstMWI GCNNNNNNNGC 2 cut(s) 158, 548
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 217
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 2 cut(s) 366, 511
BtsCI GGATG 1 cut(s) 12
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 2 cut(s) 93, 163
Cfr13I GGNCC 2 cut(s) 364, 431
Csp6I GTAC 3 cut(s) 19, 178, 447
CviQI GTAC 3 cut(s) 19, 178, 447
DdeI CTNAG 3 cut(s) 209, 410, 556
DpnI GATC 3 cut(s) 268, 296, 415
DpnII GATC 3 cut(s) 266, 294, 413
DraI TTTAAA 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 3 cut(s) 66, 133, 512
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 431
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoT14I CCWWGG 3 cut(s) 66, 133, 512
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 3 cut(s) 66, 133, 512
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 1 cut(s) 607
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 1 cut(s) 99
GlaI GCGC 2 cut(s) 92, 162
GluI GCNGC 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 2 cut(s) 366, 511
HapII CCGG 2 cut(s) 94, 590
HhaI GCGC 2 cut(s) 93, 163
Hin6I GCGC 2 cut(s) 91, 161
HinP1I GCGC 2 cut(s) 91, 161
HinfI GANTC 3 cut(s) 121, 128, 568
HpaII CCGG 2 cut(s) 94, 590
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 5 cut(s) 266, 348, 435, 559, 644
Hpy188III TCNNGA 3 cut(s) 125, 270, 284
Hpy8I GTNNAC 1 cut(s) 447
HpyCH4V TGCA 7 cut(s) 194, 233, 372, 542, 578, 619, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 548
HpyF3I CTNAG 3 cut(s) 209, 410, 556
HspAI GCGC 2 cut(s) 91, 161
Kzo9I GATC 3 cut(s) 266, 294, 413
LmnI GCTCC 2 cut(s) 88, 469
LpnPI CCDG 5 cut(s) 107, 347, 480, 603, 694
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 4 cut(s) 203, 352, 359, 451
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 3 cut(s) 497, 530, 565
MalI GATC 3 cut(s) 268, 296, 415
MboI GATC 3 cut(s) 266, 294, 413
MfeI CAATTG 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 8 cut(s) 36, 42, 214, 393, 517, 544, 608, 627
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 1 cut(s) 458
MnlI CCTC 3 cut(s) 68, 565, 597
MseI TTAA 4 cut(s) 240, 381, 632, 701
MspI CCGG 2 cut(s) 94, 590
MunI CAATTG 1 cut(s) 608
Mva1269I GAATGC 1 cut(s) 391
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 158, 548
NdeII GATC 3 cut(s) 266, 294, 413
NmuCI GTSAC 2 cut(s) 497, 565
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 121, 128
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PshBI ATTAAT 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 333
PspPI GGNCC 2 cut(s) 364, 431
PstNI CAGNNNCTG 1 cut(s) 346
RsaI GTAC 3 cut(s) 20, 179, 448
RsaNI GTAC 3 cut(s) 19, 178, 447
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 4 cut(s) 240, 381, 632, 701
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 3 cut(s) 266, 294, 413
Sau96I GGNCC 2 cut(s) 364, 431
SchI GAGTC 1 cut(s) 562
SduI GDGCHC 1 cut(s) 333
SetI ASST 6 cut(s) 26, 118, 210, 247, 333, 452
SfaNI GCATC 4 cut(s) 203, 352, 359, 451
SinI GGWCC 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 8 cut(s) 36, 42, 214, 393, 517, 544, 608, 627
SsiI CCGC 3 cut(s) 86, 152, 163
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 333
StyI CCWWGG 3 cut(s) 66, 133, 512
TaqI TCGA 4 cut(s) 47, 327, 426, 459
TasI AATT 8 cut(s) 36, 42, 214, 393, 517, 544, 608, 627
TfiI GAWTC 2 cut(s) 121, 128
Tru1I TTAA 4 cut(s) 240, 381, 632, 701
Tru9I TTAA 4 cut(s) 240, 381, 632, 701
TseFI GTSAC 2 cut(s) 497, 565
TseI GCWGC 1 cut(s) 205
Tsp45I GTSAC 2 cut(s) 497, 565
TspDTI ATGAA 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 431
VspI ATTAAT 1 cut(s) 701
XapI RAATTY 3 cut(s) 42, 214, 544
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.