FvH4_1g04890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000687
Physical Location & Seq
Reverse (-)
2582797 .. 2584519
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04890.t1

Sequence Viewer

Length: 375 bp
ATGGGATTGATGGAGAATTATTATCATGAGTTGTCTTCAACCGGGGAAGATCCTGAGAATGATAAAGTATCTCAGAAAGATTACAGAGAAGTCATGGCTGGTTTGCCTTCAAAGTTGAATCGAACTTTCTTGCAATCATGTTCCTATACGCAGAATGTGACCGTTACCATTATTATTGATACCCTCTTTTCAGAAGATACGAGGCAGACCTGTTTTGCACCATTGCCTAGTCTCAAGCATTTGGACATGAAAGATAATAGAGCGGAAAAGTTCCACAATGGCAGTGACAAATTGTTACATGAGAGACTCGTTGAATTGGATGGCACCGTCTCTGGAAATTCTATCTATAAACAAGATAAACAAGAAATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.24

Weight (kDa)

5.05

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AccBSI CCGCTC 1 cut(s) 263
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 337
AgsI TTSAA 4 cut(s) 39, 111, 118, 314
Alw26I GTCTC 3 cut(s) 236, 298, 334
AlwI GGATC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 337
AsuC2I CCSGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 2 cut(s) 4, 314
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 3 cut(s) 236, 298, 334
BfaI CTAG 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 45, 86
BshNI GGYRCC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 42
BsmAI GTCTC 3 cut(s) 236, 298, 334
BsmBI CGTCTC 1 cut(s) 334
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 46, 85
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 163, 328
BstDEI CTNAG 2 cut(s) 54, 72
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 3 cut(s) 236, 298, 334
BstMBI GATC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
CciI TCATGA 1 cut(s) 25
CviAII CATG 5 cut(s) 26, 94, 138, 247, 299
CviJI RGCY 1 cut(s) 98
CviKI_1 RGCY 1 cut(s) 98
DdeI CTNAG 2 cut(s) 54, 72
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 5 cut(s) 29, 97, 141, 250, 302
FaiI YATR 7 cut(s) 27, 95, 139, 147, 248, 300, 348
FatI CATG 5 cut(s) 25, 93, 137, 246, 298
FokI GGATG 1 cut(s) 332
FspBI CTAG 1 cut(s) 228
HapII CCGG 1 cut(s) 42
Hin1II CATG 5 cut(s) 29, 97, 141, 250, 302
HinfI GANTC 2 cut(s) 118, 306
HpaII CCGG 1 cut(s) 42
Hpy188I TCNGA 2 cut(s) 75, 193
Hpy188III TCNNGA 3 cut(s) 26, 53, 333
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 2 cut(s) 163, 328
HpyCH4V TGCA 2 cut(s) 133, 218
HpyF3I CTNAG 2 cut(s) 54, 72
Hsp92II CATG 5 cut(s) 29, 97, 141, 250, 302
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 5 cut(s) 55, 66, 84, 223, 318
MaeI CTAG 1 cut(s) 228
MaeIII GTNAC 4 cut(s) 157, 163, 284, 294
MalI GATC 1 cut(s) 51
MbiI CCGCTC 1 cut(s) 263
MboI GATC 1 cut(s) 49
MboII GAAGA 3 cut(s) 27, 59, 206
MflI RGATCY 1 cut(s) 49
MluCI AATT 4 cut(s) 16, 290, 314, 337
MlyI GAGTC 1 cut(s) 300
MnlI CCTC 2 cut(s) 194, 195
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 43
NciI CCSGG 1 cut(s) 43
NdeII GATC 1 cut(s) 49
NlaIII CATG 5 cut(s) 29, 97, 141, 250, 302
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 2 cut(s) 157, 284
PagI TCATGA 1 cut(s) 25
PfeI GAWTC 1 cut(s) 118
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 325
PsuI RGATCY 1 cut(s) 49
Sau3AI GATC 1 cut(s) 49
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 43
SetI ASST 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 4 cut(s) 16, 290, 314, 337
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 163, 328
TaqI TCGA 1 cut(s) 121
TasI AATT 4 cut(s) 16, 290, 314, 337
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 2 cut(s) 157, 284
Tsp45I GTSAC 2 cut(s) 157, 284
TspDTI ATGAA 1 cut(s) 263
TspRI CASTG 1 cut(s) 289
XapI RAATTY 1 cut(s) 337
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.