Rw7G006370

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000687
Physical Location & Seq
Forward (+)
5411963 .. 5414324
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006370.1

Sequence Viewer

Length: 1011 bp
ATGATTTGTAAAGCCATGGCTAAGAAGAGAAAAACTTCAGGCTGCAGCTACCACGACTCAAAGACAAACAAAAAGAAAGACGATGAACAAAACAAAAGCCCTAGCACGGTCTTTGAAGTCGACAGATACGTACCCGAATTGCCTGACCTTGTTATCCACCAAATCCTCTTATTTCTCACTCTCCTTTCCCCCAAGCAAGCCGCTCGGGCCAGCCTTGTTTCCAAGCAATGGGCAAGCGTATGGTTTTCGCTTCCGGTACTAGCTTTTGAGGAGTACGATCAGGATCCTAAGCCATACACTGATGATAAGGCTCGGCGAAAACAGTTCATCAACTTCGTGAATACCAATTTGAAGCGCTGGGAGAAAGATAAGCGCGACTTAGATAAGTTGGGGCTTCGTATGAAATACTCGGCAAGTCGTGGCACCATACAAAAGTGCTTGAGTTTTGCTGTTGATAGAAACGTTAAAGAGATAGACATAAGTTTTACAAGAGAAAGCATAGCTGGGCAGAGATGCAAAACCTTCTCCTTATCACGAATGCTTCTCAACAGTGCAAAATCTCTAACCATTCTTTGCTATAATAACCTTCCGTCTTTGAAAACTATGTCCCTCAACCATTTGCGAAGTAATTTGACATTCTTGCAATTACTTTCGGGGTGTCCTTTGCTTGAGAATTTGTTGTTAAATTCATGTGTTGGCTTCCACGGTGTACTTTCAAGTTCGAGCCTCAAATCCCTGGACGTTGTGCAATGCAAGTCATTGCAAGTTCAAGCCGAGAATCTTGAATCTATTAAGCTGGGTGGCAATGAATCCTTTGATATCACCTCTTGTGAAAGAGCTCTTATATTTCGAGAAGAAATGAGAGGCAAATGCTCTCCACCATTACCAACTCTGGATTATCTTGAAGTAGAGATAAGTAATACTTCTACAACAGCAGTTCCAGATTCTGTCTTGTTGGACTCGTTGCGTTGGATGGCACCCTCTTCTCAAGTTTCGATCTGCAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

336

Amino Acids

37.98

Weight (kDa)

9.15

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 422, 976
AccB7I CCANNNNNTGG 1 cut(s) 228
AccBSI CCGCTC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 120
AccII CGCG 1 cut(s) 375
AciI CCGC 1 cut(s) 201
AclI AACGTT 1 cut(s) 462
AclWI GGATC 2 cut(s) 278, 291
AcsI RAATTY 2 cut(s) 673, 685
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 4 cut(s) 132, 258, 275, 711
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 2 cut(s) 106, 228
AgsI TTSAA 7 cut(s) 116, 352, 598, 717, 770, 785, 905
AjnI CCWGG 1 cut(s) 735
AluBI AGCT 5 cut(s) 48, 263, 503, 796, 839
AluI AGCT 5 cut(s) 48, 263, 503, 796, 839
Alw21I GWGCWC 1 cut(s) 841
AlwI GGATC 2 cut(s) 278, 291
AlwNI CAGNNNCTG 1 cut(s) 947
Ama87I CYCGRG 1 cut(s) 204
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 42, 45
ApoI RAATTY 2 cut(s) 673, 685
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 2 cut(s) 357, 375
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 814
AvaI CYCGRG 1 cut(s) 204
BamHI GGATCC 1 cut(s) 283
BanI GGYRCC 2 cut(s) 422, 976
BanII GRGCYC 1 cut(s) 841
Bbv12I GWGCWC 1 cut(s) 841
BbvI GCAGC 2 cut(s) 29, 57
BccI CCATC 1 cut(s) 967
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 737
BfaI CTAG 2 cut(s) 102, 260
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 358
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 3 cut(s) 43, 46, 201
BlsI GCNGC 3 cut(s) 44, 47, 202
Bme1390I CCNGG 1 cut(s) 737
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 3 cut(s) 285, 424, 978
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 3 cut(s) 460, 689, 972
BsaAI YACGTR 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 15, 703, 735
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 228
Bse3DI GCAATG 4 cut(s) 233, 755, 758, 811
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 15, 703, 735
BseGI GGATG 1 cut(s) 978
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 106, 228
BseMI GCAATG 4 cut(s) 233, 755, 758, 811
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 29, 57
BseYI CCCAGC 3 cut(s) 357, 503, 796
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 2 cut(s) 422, 976
BsiHKAI GWGCWC 1 cut(s) 841
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 2 cut(s) 106, 228
BsmFI GGGAC 1 cut(s) 592
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 841
Bsp143I GATC 3 cut(s) 277, 283, 996
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 209
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 285, 424, 978
BspMAI CTGCAG 1 cut(s) 47
BspPI GGATC 2 cut(s) 278, 291
BspT107I GGYRCC 2 cut(s) 422, 976
BsrBI CCGCTC 1 cut(s) 203
BsrDI GCAATG 4 cut(s) 233, 755, 758, 811
BssECI CCNNGG 3 cut(s) 15, 703, 735
BssMI GATC 3 cut(s) 277, 283, 996
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 4 cut(s) 109, 324, 551, 707
Bst6I CTCTTC 2 cut(s) 20, 988
BstBAI YACGTR 1 cut(s) 130
BstC8I GCNNGC 3 cut(s) 198, 211, 235
BstDEI CTNAG 3 cut(s) 21, 288, 379
BstDSI CCRYGG 2 cut(s) 15, 703
BstF5I GGATG 1 cut(s) 978
BstFNI CGCG 1 cut(s) 375
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 2 cut(s) 357, 375
BstKTI GATC 3 cut(s) 280, 286, 999
BstMBI GATC 3 cut(s) 277, 283, 996
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 737
BstSCI CCNGG 1 cut(s) 735
BstSFI CTRYAG 1 cut(s) 43
BstSNI TACGTA 1 cut(s) 130
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 29, 57
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 2 cut(s) 15, 703
BtsCI GGATG 1 cut(s) 978
BtsIMutI CAGTG 2 cut(s) 297, 556
Cac8I GCNNGC 3 cut(s) 198, 211, 235
CaiI CAGNNNCTG 1 cut(s) 947
CfoI GCGC 2 cut(s) 357, 375
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 4 cut(s) 131, 257, 274, 710
CviAII CATG 2 cut(s) 16, 690
CviQI GTAC 4 cut(s) 131, 257, 274, 710
DdeI CTNAG 3 cut(s) 21, 288, 379
DpnI GATC 3 cut(s) 279, 285, 998
DpnII GATC 3 cut(s) 277, 283, 996
Eam1104I CTCTTC 2 cut(s) 20, 988
EarI CTCTTC 2 cut(s) 20, 988
Ecl136II GAGCTC 1 cut(s) 839
Eco105I TACGTA 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 841
Eco32I GATATC 1 cut(s) 820
Eco47III AGCGCT 1 cut(s) 356
Eco53kI GAGCTC 1 cut(s) 839
Eco57I CTGAAG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 735
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 841
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 19, 693
FalI AAGNNNNNCTT 4 cut(s) 362, 394, 907, 939
FaqI GGGAC 1 cut(s) 592
FatI CATG 2 cut(s) 15, 689
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 43, 46, 201
FokI GGATG 1 cut(s) 985
FriOI GRGCYC 1 cut(s) 841
Fsp4HI GCNGC 3 cut(s) 43, 46, 201
FspBI CTAG 2 cut(s) 102, 260
GlaI GCGC 2 cut(s) 356, 374
GluI GCNGC 3 cut(s) 43, 46, 201
GsaI CCCAGC 3 cut(s) 361, 507, 800
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 254
HhaI GCGC 2 cut(s) 357, 375
Hin1II CATG 2 cut(s) 19, 693
Hin6I GCGC 2 cut(s) 355, 373
HinP1I GCGC 2 cut(s) 355, 373
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 6 cut(s) 56, 778, 785, 809, 944, 959
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 814
Hpy166II GTNNAC 2 cut(s) 121, 710
Hpy188III TCNNGA 8 cut(s) 281, 337, 534, 782, 851, 893, 902, 941
Hpy8I GTNNAC 2 cut(s) 121, 710
HpyAV CCTTC 2 cut(s) 532, 596
HpyCH4III ACNGT 4 cut(s) 109, 324, 551, 707
HpyCH4IV ACGT 3 cut(s) 129, 462, 741
HpyCH4V TGCA 8 cut(s) 45, 516, 554, 643, 748, 753, 763, 1002
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 3 cut(s) 21, 288, 379
HpySE526I ACGT 3 cut(s) 129, 462, 741
Hsp92II CATG 2 cut(s) 19, 693
HspAI GCGC 2 cut(s) 355, 373
Kzo9I GATC 3 cut(s) 277, 283, 996
Lsp1109I GCAGC 2 cut(s) 29, 57
LweI GCATC 1 cut(s) 503
MaeI CTAG 2 cut(s) 102, 260
MaeII ACGT 3 cut(s) 129, 462, 741
MalI GATC 3 cut(s) 279, 285, 998
MbiI CCGCTC 1 cut(s) 203
MboI GATC 3 cut(s) 277, 283, 996
MboII GAAGA 3 cut(s) 37, 866, 975
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 841
MluCI AATT 6 cut(s) 137, 346, 628, 644, 673, 685
MlyI GAGTC 2 cut(s) 50, 953
MmeI TCCRAC 2 cut(s) 936, 950
MnlI CCTC 7 cut(s) 176, 262, 620, 737, 835, 857, 991
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 3 cut(s) 465, 683, 792
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 737
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 206
NcoI CCATGG 1 cut(s) 15
NdeII GATC 3 cut(s) 277, 283, 996
NlaIII CATG 2 cut(s) 19, 693
NlaIV GGNNCC 3 cut(s) 285, 424, 978
NmeAIII GCCGAG 3 cut(s) 292, 389, 799
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 543
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 4 cut(s) 778, 785, 809, 944
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 3 cut(s) 44, 47, 202
PleI GAGTC 2 cut(s) 50, 953
PpsI GAGTC 2 cut(s) 50, 953
Ppu21I YACGTR 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 841
Psp1406I AACGTT 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 3 cut(s) 357, 503, 796
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 3 cut(s) 285, 424, 978
PspPI GGNCC 1 cut(s) 207
PstI CTGCAG 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 4 cut(s) 132, 258, 275, 711
RsaNI GTAC 4 cut(s) 131, 257, 274, 710
SacI GAGCTC 1 cut(s) 841
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 3 cut(s) 465, 683, 792
SatI GCNGC 3 cut(s) 43, 46, 201
Sau3AI GATC 3 cut(s) 277, 283, 996
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 2 cut(s) 50, 953
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 1 cut(s) 841
SfaNI GCATC 1 cut(s) 503
SfcI CTRYAG 1 cut(s) 43
SmlI CTYRAG 3 cut(s) 439, 668, 987
SmoI CTYRAG 3 cut(s) 439, 668, 987
SnaBI TACGTA 1 cut(s) 130
Sse9I AATT 6 cut(s) 137, 346, 628, 644, 673, 685
SsiI CCGC 1 cut(s) 201
SspMI CTAG 2 cut(s) 102, 260
SstI GAGCTC 1 cut(s) 841
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 4 cut(s) 109, 324, 551, 707
TaiI ACGT 3 cut(s) 132, 465, 744
TaqI TCGA 4 cut(s) 120, 722, 850, 995
TasI AATT 6 cut(s) 137, 346, 628, 644, 673, 685
TatI WGTACW 1 cut(s) 709
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 4 cut(s) 778, 785, 809, 944
Tru1I TTAA 3 cut(s) 465, 683, 792
Tru9I TTAA 3 cut(s) 465, 683, 792
TscAI CASTG 2 cut(s) 304, 556
TseI GCWGC 2 cut(s) 42, 45
TspDTI ATGAA 5 cut(s) 99, 316, 416, 678, 822
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 2 cut(s) 304, 556
Van91I CCANNNNNTGG 1 cut(s) 228
XapI RAATTY 2 cut(s) 673, 685
XmiI GTMKAC 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 2 cut(s) 102, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.