Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Reverse (-)

6532530 .. 6533513

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACATCACTAAAAGGTCATTCAAGTCCTACCCTGGCTACAACCTACCACTTATCTCATACGGTGCTTGGTTCACAGTCTTTAACTATTTTAAACTTGCAGTGTTTGAAAATAGAGGCCAAGCATGATGATATTCTTGGATTTAGCCTTCCCTCATTGAAATCTTTGTCCCTAATATATATGAAGAATGCTTGCGGCATAGGTTTGGATTCTTGTGGAGCACTTAGAAGTTTAGACATCTATAATGGAATTTTTGATAGCGCATGGTTTGAAGGCTTTGGTTGTAGATTTTCACTGCTTCAGAGTTTGTTCTTATATAAATGTTGCATCAGAAGCACAGGTTGTGCTAATCTCATAAGCGTCGATGCTCCGAACCTACAATCTTTAGGGTTCAGTGGTTGCAGGCAGATCAGCTTTTGCATGAATGCGCCAAAGTTAACTAAGGCTGTAATCATACTGGACGACCACAAGGACTCTAAATTGGGTTCTTCTCATAGAAGAGATTTTCTTTCAAATTTTAATTGTTGCGGAAAAGTATCTATATACACTGATGATCCTAAGGCACTCATCTTTCCTAAGAAGATGAGAAAGAAGAAGTCATGTTGTCCACCATTAGCTAGTGTCAAGCATATGGATGTAGTGATACAACATGACTACCGGACTCGGGAGATTATAGATTTTATCATCTTCAAGGACTCCTTGCGTTGGATGGCACCTGGTTTGGAGACTCTATCAGTAAACAAGAAATGTTGGGAGGGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

255

Amino Acids

28.25

Weight (kDa)

8.97

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	712, 758
AciI	CCGC	2 cut(s)	195, 528
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	249, 514
AcuI	CTGAAG	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	664, 705
AgsI	TTSAA	6 cut(s)	24, 109, 160, 272, 513, 691
AjnI	CCWGG	2 cut(s)	33, 715
AluBI	AGCT	2 cut(s)	414, 617
AluI	AGCT	2 cut(s)	414, 617
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	663
AoxI	GGCC	1 cut(s)	117
ApoI	RAATTY	2 cut(s)	249, 514
AspLEI	GCGC	2 cut(s)	263, 430
AvaI	CYCGRG	1 cut(s)	663
AxyI	CCTNAGG	1 cut(s)	558
BanI	GGYRCC	2 cut(s)	712, 758
Bbv12I	GWGCWC	1 cut(s)	223
BccI	CCATC	1 cut(s)	703
BciT130I	CCWGG	2 cut(s)	35, 717
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	1 cut(s)	618
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	35, 717
BmeT110I	CYCGRG	1 cut(s)	663
BmiI	GGNNCC	2 cut(s)	714, 760
BmrFI	CCNGG	2 cut(s)	35, 717
BmsI	GCATC	2 cut(s)	336, 355
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	2 cut(s)	664, 705
Bse1I	ACTGG	1 cut(s)	462
Bse21I	CCTNAGG	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	35, 717
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	640, 714
BseLI	CCNNNNNNNGG	2 cut(s)	664, 705
BseNI	ACTGG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	2 cut(s)	712, 758
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	658
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	664, 705
BsmAI	GTCTC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	2 cut(s)	193, 430
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	663
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	408, 553
BspACI	CCGC	2 cut(s)	195, 528
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	714, 760
BspPI	GGATC	1 cut(s)	548
BspT107I	GGYRCC	2 cut(s)	712, 758
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	408, 553
Bst2UI	CCWGG	2 cut(s)	35, 717
Bst4CI	ACNGT	2 cut(s)	64, 78
Bst6I	CTCTTC	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	193, 404
BstDEI	CTNAG	4 cut(s)	224, 441, 558, 576
BstF5I	GGATG	2 cut(s)	640, 714
BstHHI	GCGC	2 cut(s)	263, 430
BstKTI	GATC	2 cut(s)	411, 556
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	2 cut(s)	408, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstNI	CCWGG	2 cut(s)	35, 717
BstSCI	CCNGG	2 cut(s)	33, 715
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	640, 714
BtsI	GCAGTG	2 cut(s)	107, 293
BtsIMutI	CAGTG	4 cut(s)	107, 293, 400, 546
Cac8I	GCNNGC	2 cut(s)	193, 404
CfoI	GCGC	2 cut(s)	263, 430
CseI	GACGC	1 cut(s)	349
CsiI	ACCWGGT	1 cut(s)	715
CviAII	CATG	5 cut(s)	125, 264, 421, 600, 650
CviJI	RGCY	7 cut(s)	38, 119, 147, 276, 414, 446, 617
CviKI_1	RGCY	7 cut(s)	38, 119, 147, 276, 414, 446, 617
DdeI	CTNAG	4 cut(s)	224, 441, 558, 576
DpnI	GATC	2 cut(s)	410, 555
DpnII	GATC	2 cut(s)	408, 553
DraI	TTTAAA	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	33, 715
FaeI	CATG	5 cut(s)	128, 267, 424, 603, 653
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	5 cut(s)	124, 263, 420, 599, 649
FauNDI	CATATG	1 cut(s)	630
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	2 cut(s)	647, 721
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	2 cut(s)	262, 429
GluI	GCNGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	658
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	2 cut(s)	263, 430
Hin1II	CATG	5 cut(s)	128, 267, 424, 603, 653
Hin6I	GCGC	2 cut(s)	261, 428
HinP1I	GCGC	2 cut(s)	261, 428
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	5 cut(s)	209, 473, 661, 695, 727
HpaI	GTTAAC	1 cut(s)	438
HpaII	CCGG	1 cut(s)	658
Hpy166II	GTNNAC	4 cut(s)	74, 438, 608, 739
Hpy188I	TCNGA	3 cut(s)	303, 332, 372
Hpy188III	TCNNGA	1 cut(s)	665
Hpy8I	GTNNAC	4 cut(s)	74, 438, 608, 739
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	2 cut(s)	158, 266
HpyCH4III	ACNGT	2 cut(s)	64, 78
HpyCH4V	TGCA	4 cut(s)	100, 327, 402, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	4 cut(s)	224, 441, 558, 576
Hsp92II	CATG	5 cut(s)	128, 267, 424, 603, 653
HspAI	GCGC	2 cut(s)	261, 428
KspAI	GTTAAC	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	408, 553
LmnI	GCTCC	2 cut(s)	218, 373
LpnPI	CCDG	8 cut(s)	20, 47, 324, 388, 443, 671, 702, 729
LweI	GCATC	2 cut(s)	336, 355
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	1 cut(s)	618
MalI	GATC	2 cut(s)	410, 555
MboI	GATC	2 cut(s)	408, 553
MboII	GAAGA	6 cut(s)	196, 480, 510, 592, 604, 679
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	249, 479, 514, 520
MlyI	GAGTC	4 cut(s)	467, 655, 689, 721
MmeI	TCCRAC	1 cut(s)	686
MnlI	CCTC	3 cut(s)	109, 163, 748
MseI	TTAA	4 cut(s)	83, 92, 437, 519
MslI	CAYNNNNRTG	1 cut(s)	633
MspI	CCGG	1 cut(s)	658
MspR9I	CCNGG	2 cut(s)	35, 717
Mva1269I	GAATGC	2 cut(s)	193, 430
MvaI	CCWGG	2 cut(s)	35, 717
MwoI	GCNNNNNNNGC	1 cut(s)	333
NdeI	CATATG	1 cut(s)	630
NdeII	GATC	2 cut(s)	408, 553
NlaIII	CATG	5 cut(s)	128, 267, 424, 603, 653
NlaIV	GGNNCC	2 cut(s)	714, 760
PctI	GAATGC	2 cut(s)	193, 430
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	4 cut(s)	467, 655, 689, 721
PpsI	GAGTC	4 cut(s)	467, 655, 689, 721
Psp6I	CCWGG	2 cut(s)	33, 715
PspGI	CCWGG	2 cut(s)	33, 715
PspN4I	GGNNCC	2 cut(s)	714, 760
RseI	CAYNNNNRTG	1 cut(s)	633
SaqAI	TTAA	4 cut(s)	83, 92, 437, 519
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	408, 553
SchI	GAGTC	4 cut(s)	467, 655, 689, 721
ScrFI	CCNGG	2 cut(s)	35, 717
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	8 cut(s)	19, 47, 205, 343, 378, 416, 619, 718
SexAI	ACCWGGT	1 cut(s)	715
SfaNI	GCATC	2 cut(s)	336, 355
SmiMI	CAYNNNNRTG	1 cut(s)	633
Sse9I	AATT	4 cut(s)	249, 479, 514, 520
SsiI	CCGC	2 cut(s)	195, 528
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	2 cut(s)	33, 715
TaaI	ACNGT	2 cut(s)	64, 78
TaqI	TCGA	1 cut(s)	363
TasI	AATT	4 cut(s)	249, 479, 514, 520
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	4 cut(s)	83, 92, 437, 519
Tru9I	TTAA	4 cut(s)	83, 92, 437, 519
TscAI	CASTG	4 cut(s)	107, 300, 400, 553
TspDTI	ATGAA	2 cut(s)	197, 437
TspRI	CASTG	4 cut(s)	107, 300, 400, 553
XapI	RAATTY	2 cut(s)	249, 514
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.