FvH4_5g08910

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000687
Physical Location & Seq
Reverse (-)
5144748 .. 5148882
4135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08910.t1

Sequence Viewer

Length: 453 bp
ATGAAATGGAATGGTGCTGCAACTCCAATGGAGGATGCCGGAGTAGTTGATGCAGCTCCAAATTTATGTGAGGCTACGATCATAATTGACAAGAGCACAAGATGGGATACATATCATATTACCGTCAGGGATTTCCTTGCAAATTTTGACTGCTCAGTAAAATTATCCATCTATGCTTTTGGTTCTGAGGATATGCTCTTTTCAGAAGATACGAGGCAGACCTGTTTTGCACCATTGCCTAGTCTCAAGCATTTGGACATGAAGATAATAGAGCGGAAAAGTTCCGCTATGGCAGTGACAAATTGTTACATGAGGGACTCGTTGAATTGGATGGCACCATCTCTGGAAATTCTATCTATAAACAAGATAAACAAGAAATGGAGTAAAAATTTCAACAAAGAGATTAATTCCTGTTTGCGATACCATTTCCACCCTGTGACAGGTGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

151

Amino Acids

17.05

Weight (kDa)

6.88

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccBSI CCGCTC 1 cut(s) 274
AciI CCGC 2 cut(s) 274, 285
AcsI RAATTY 4 cut(s) 61, 142, 348, 388
AdeI CACNNNGTG 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 2 cut(s) 325, 394
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 248
ApeKI GCWGC 2 cut(s) 17, 53
ApoI RAATTY 4 cut(s) 61, 142, 348, 388
AseI ATTAAT 1 cut(s) 405
BanI GGYRCC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 4, 65
BccI CCATC 4 cut(s) 96, 176, 325, 346
BciVI GTATCC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 240
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 2 cut(s) 18, 54
BlsI GCNGC 2 cut(s) 19, 55
BmiI GGNNCC 1 cut(s) 336
BmsI GCATC 2 cut(s) 25, 40
BpuEI CTTGAG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 111
BseGI GGATG 2 cut(s) 40, 336
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 168, 177
BseXI GCAGC 2 cut(s) 4, 65
BshNI GGYRCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 2 cut(s) 274, 285
BspCNI CTCAG 2 cut(s) 167, 178
BspLI GGNNCC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 334
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 233
BssMI GATC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 124
BstDEI CTNAG 2 cut(s) 154, 186
BstENI CCTNNNNNAGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 40, 336
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 4, 65
BsuI GTATCC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 40, 336
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
CviAII CATG 2 cut(s) 259, 310
CviJI RGCY 2 cut(s) 56, 74
CviKI_1 RGCY 2 cut(s) 56, 74
DdeI CTNAG 2 cut(s) 154, 186
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
DraIII CACNNNGTG 1 cut(s) 436
EcoNI CCTNNNNNAGG 1 cut(s) 438
FaeI CATG 2 cut(s) 262, 313
FaqI GGGAC 1 cut(s) 329
FatI CATG 2 cut(s) 258, 309
Fnu4HI GCNGC 2 cut(s) 18, 54
FokI GGATG 2 cut(s) 47, 343
Fsp4HI GCNGC 2 cut(s) 18, 54
FspBI CTAG 1 cut(s) 240
GluI GCNGC 2 cut(s) 18, 54
HapII CCGG 1 cut(s) 39
Hin1II CATG 2 cut(s) 262, 313
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 187, 205
Hpy188III TCNNGA 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 20, 53, 140, 230
HpyF3I CTNAG 2 cut(s) 154, 186
Hsp92II CATG 2 cut(s) 262, 313
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 7 cut(s) 52, 112, 235, 329, 424, 426, 447
Lsp1109I GCAGC 2 cut(s) 4, 65
LweI GCATC 2 cut(s) 25, 40
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 295, 305, 436
MalI GATC 1 cut(s) 80
MbiI CCGCTC 1 cut(s) 274
MboI GATC 1 cut(s) 78
MboII GAAGA 2 cut(s) 218, 274
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 9 cut(s) 61, 84, 142, 161, 301, 325, 348, 388, 406
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 5 cut(s) 25, 64, 181, 207, 306
MseI TTAA 1 cut(s) 405
MspI CCGG 1 cut(s) 39
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 262, 313
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 2 cut(s) 295, 436
PkrI GCNGC 2 cut(s) 19, 55
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PshBI ATTAAT 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 2 cut(s) 18, 54
Sau3AI GATC 1 cut(s) 78
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 58, 224, 445
SfaNI GCATC 2 cut(s) 25, 40
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 9 cut(s) 61, 84, 142, 161, 301, 325, 348, 388, 406
SsiI CCGC 2 cut(s) 274, 285
SspMI CTAG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 124
TasI AATT 9 cut(s) 61, 84, 142, 161, 301, 325, 348, 388, 406
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 2 cut(s) 295, 436
TseI GCWGC 2 cut(s) 17, 53
Tsp45I GTSAC 2 cut(s) 295, 436
TspDTI ATGAA 2 cut(s) 17, 275
TspRI CASTG 1 cut(s) 300
VspI ATTAAT 1 cut(s) 405
XagI CCTNNNNNAGG 1 cut(s) 438
XapI RAATTY 4 cut(s) 61, 142, 348, 388
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.