Rorug02G0507800

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000687
Physical Location & Seq
Forward (+)
63901537 .. 63902808
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0507800.1

Sequence Viewer

Length: 1272 bp
ATGAATTATGTTCTCTGTGGGGGACCTTGGATCCTGGCGGGACATACCGTAATTGTTAGGAAGTGGAGACTTGATTTTGACCCTATGACTGAGGTAATTGGAAAAATGGCTTTATGGGTTCGAATTTGTGGACTGCCTGTGAAATACTTTAAGGATTACACTGTGGATAAGATTGGTAGAGTGCTTGGTGATGTTGTTAAGATTGATCAGGTCACTATTGGCCAAGCTAGAGGGAAATTTGCTAGAGTCTGTGTTGAAATTGATCTTAATAAGCCTCTCAGGCCTTTTGTTGAAGTGGAATCTGTGGCGTATAATGTTATTTATGAGGGGATATCTCTGATTTGCTTCGAGTGTGGTTGTTATGGACATGCCAAGGACAAGTGCCCCTCTATTGTGATTGATGCTAATGCTCACTCTCAACCTTCACACACAGCCAACAACACTGATGACCACACTATGGACTCTGTTGAAAAGGATGGTGTGAAGCACGATTTTGGTGGTCATATTGACCAGGCAACTGTGCTTAAGGAAGATATGGGTCCCTGGATGCTGATGAGCTATAGGAATAAGATGAAAAACATTGAGGCCAATGGTTCTAAGAAAAATACTAATAAGGGTTCTAGGTTCTCAGTTTTGCAAGATGAAGTTGCTGGTACTGATGTTGAGCCTGAGACGAATTCTGACAATTCTACGAAGATGTCAACTGTGCCAATTGTGAAATTGTGGACTAGCTTCCAAGAGAAGAAGAAGAACCTAAATAAGGCCAACCTTGCCAAACCTGAATTGTCTCCTGCTTCTAAAACTGCTGGTAATGGTACTTCTGCATCTGGATCCTTGAAGTCTGGTCCTCGAGTCCCACTGAAAGATGTTTCTAATGTGGAGAGTGGCAGTGGCTCCATGTCAACTATGCAATACCAAAGGAAGTCTAAAGGTACCTTCCCTTCTAATGCTAAACACCAACCTACTGTTTTTAAGAAATTATCCTTTGAGAATGTCGGGAATGTGTTTGGTGATGGTATTTCTGCTATATTTGGCCATTGTCCTCCTGAGGAGAGGATGTTGGATGCTAGGTCTGATCCTTCCTTGGCCCAGGCTTCTGATTGTTTTGTTGAAAAGACTTTTGCTGATATTAGCAAATTAACTAGTGATGACAACCTGCCTTCCCAAGTTGGGGAAGGTATGGTTGATGCCAAACCTGGGACTTCCCCTCCTCCCCTCTACTATTTTAATGGATCACATCCTCTTTTGGAATGCTCGTGGAGCTGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

423

Amino Acids

46.41

Weight (kDa)

6.8

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1164
Acc65I GGTACC 1 cut(s) 932
AccB1I GGYRCC 1 cut(s) 932
AccB7I CCANNNNNTGG 1 cut(s) 457
AciI CCGC 1 cut(s) 38
AclWI GGATC 6 cut(s) 25, 38, 825, 838, 1070, 1240
AcoI YGGCCR 2 cut(s) 220, 1033
AcsI RAATTY 3 cut(s) 123, 236, 676
AfaI GTAC 3 cut(s) 655, 817, 934
AfiI CCNNNNNNNGG 5 cut(s) 457, 760, 1170, 1171, 1197
AflII CTTAAG 1 cut(s) 524
AgsI TTSAA 5 cut(s) 257, 293, 470, 838, 1112
AhlI ACTAGT 1 cut(s) 1142
AjnI CCWGG 5 cut(s) 33, 510, 542, 1089, 1195
AluBI AGCT 4 cut(s) 227, 558, 732, 1263
AluI AGCT 4 cut(s) 227, 558, 732, 1263
Alw26I GTCTC 3 cut(s) 61, 665, 792
AlwI GGATC 6 cut(s) 25, 38, 825, 838, 1070, 1240
Ama87I CYCGRG 1 cut(s) 849
AoxI GGCC 6 cut(s) 220, 281, 585, 762, 1033, 1086
ApoI RAATTY 3 cut(s) 123, 236, 676
Asp718I GGTACC 1 cut(s) 932
AspS9I GGNCC 4 cut(s) 23, 539, 845, 1087
AsuHPI GGTGA 2 cut(s) 200, 1022
AsuII TTCGAA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 3 cut(s) 23, 539, 845
AxyI CCTNAGG 1 cut(s) 1047
BaeGI GKGCMC 1 cut(s) 386
BaeI ACNNNNGTAYC 2 cut(s) 645, 678
BalI TGGCCA 2 cut(s) 222, 1035
BamHI GGATCC 2 cut(s) 30, 830
BanI GGYRCC 1 cut(s) 932
BarI GAAGNNNNNNTAC 4 cut(s) 802, 834, 925, 957
BauI CACGAG 1 cut(s) 1255
BccI CCATC 2 cut(s) 470, 1007
BciT130I CCWGG 5 cut(s) 35, 512, 544, 1091, 1197
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 61, 665, 792
BcuI ACTAGT 1 cut(s) 1142
BfaI CTAG 6 cut(s) 228, 243, 621, 729, 1068, 1143
BfmI CTRYAG 1 cut(s) 559
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 1164
BglI GCCNNNNNGGC 1 cut(s) 280
Bme1390I CCNGG 5 cut(s) 35, 512, 544, 1091, 1197
Bme18I GGWCC 3 cut(s) 23, 539, 845
BmeT110I CYCGRG 1 cut(s) 849
BmgT120I GGNCC 4 cut(s) 23, 539, 845, 1087
BmiI GGNNCC 7 cut(s) 24, 32, 540, 541, 832, 895, 934
BmrFI CCNGG 5 cut(s) 35, 512, 544, 1091, 1197
BmsI GCATC 5 cut(s) 391, 537, 833, 1054, 1177
Bpu14I TTCGAA 1 cut(s) 121
BsaJI CCNNGG 6 cut(s) 26, 372, 542, 1083, 1089, 1196
BsaXI ACNNNNNCTCC 4 cut(s) 1043, 1073, 1192, 1222
Bsc4I CCNNNNNNNGG 5 cut(s) 457, 760, 1170, 1171, 1197
Bse21I CCTNAGG 1 cut(s) 1047
BseBI CCWGG 5 cut(s) 35, 512, 544, 1091, 1197
BseDI CCNNGG 6 cut(s) 26, 372, 542, 1083, 1089, 1196
BseGI GGATG 5 cut(s) 481, 552, 1062, 1069, 1237
BseLI CCNNNNNNNGG 5 cut(s) 457, 760, 1170, 1171, 1197
BseMII CTCAG 5 cut(s) 81, 292, 642, 660, 1038
BseRI GAGGAG 2 cut(s) 1064, 1200
BseSI GKGCMC 1 cut(s) 386
BseYI CCCAGC 1 cut(s) 1263
BshFI GGCC 6 cut(s) 222, 283, 587, 764, 1035, 1088
BshNI GGYRCC 1 cut(s) 932
BsiHKCI CYCGRG 1 cut(s) 849
BslFI GGGAC 5 cut(s) 36, 54, 525, 839, 1213
BslI CCNNNNNNNGG 5 cut(s) 457, 760, 1170, 1171, 1197
BsmAI GTCTC 3 cut(s) 61, 665, 792
BsmBI CGTCTC 1 cut(s) 665
BsmFI GGGAC 5 cut(s) 36, 54, 525, 839, 1213
BsmI GAATGC 1 cut(s) 1256
BsnI GGCC 6 cut(s) 222, 283, 587, 764, 1035, 1088
BsoBI CYCGRG 1 cut(s) 849
Bsp119I TTCGAA 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 6 cut(s) 30, 205, 262, 830, 1075, 1232
BspACI CCGC 1 cut(s) 38
BspANI GGCC 6 cut(s) 222, 283, 587, 764, 1035, 1088
BspCNI CTCAG 5 cut(s) 82, 291, 641, 661, 1039
BspLI GGNNCC 7 cut(s) 24, 32, 540, 541, 832, 895, 934
BspMI ACCTGC 1 cut(s) 1164
BspPI GGATC 6 cut(s) 25, 38, 825, 838, 1070, 1240
BspT104I TTCGAA 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 932
BspTI CTTAAG 1 cut(s) 524
BssECI CCNNGG 6 cut(s) 26, 372, 542, 1083, 1089, 1196
BssMI GATC 6 cut(s) 30, 205, 262, 830, 1075, 1232
BssSI CACGAG 1 cut(s) 1255
BssT1I CCWWGG 3 cut(s) 26, 372, 1083
Bst2BI CACGAG 1 cut(s) 1255
Bst2UI CCWGG 5 cut(s) 35, 512, 544, 1091, 1197
Bst4CI ACNGT 5 cut(s) 49, 163, 520, 706, 967
BstAFI CTTAAG 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 121
BstDEI CTNAG 6 cut(s) 90, 278, 597, 628, 669, 1047
BstENI CCTNNNNNAGG 1 cut(s) 758
BstF5I GGATG 5 cut(s) 481, 552, 1062, 1069, 1237
BstKTI GATC 6 cut(s) 33, 208, 265, 833, 1078, 1235
BstMAI GTCTC 3 cut(s) 61, 665, 792
BstMBI GATC 6 cut(s) 30, 205, 262, 830, 1075, 1232
BstMWI GCNNNNNNNGC 3 cut(s) 280, 770, 1260
BstNI CCWGG 5 cut(s) 35, 512, 544, 1091, 1197
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 5 cut(s) 33, 510, 542, 1089, 1195
BstSFI CTRYAG 1 cut(s) 559
BstSLI GKGCMC 1 cut(s) 386
BstX2I RGATCY 2 cut(s) 30, 830
BstYI RGATCY 2 cut(s) 30, 830
Bsu36I CCTNAGG 1 cut(s) 1047
BsuRI GGCC 6 cut(s) 222, 283, 587, 764, 1035, 1088
BtsCI GGATG 5 cut(s) 481, 552, 1062, 1069, 1237
BtsI GCAGTG 1 cut(s) 895
BtsIMutI CAGTG 4 cut(s) 159, 441, 857, 895
BveI ACCTGC 1 cut(s) 1164
Cfr13I GGNCC 4 cut(s) 23, 539, 845, 1087
Csp6I GTAC 3 cut(s) 654, 816, 933
CviAII CATG 2 cut(s) 368, 898
CviQI GTAC 3 cut(s) 654, 816, 933
DdeI CTNAG 6 cut(s) 90, 278, 597, 628, 669, 1047
DpnI GATC 6 cut(s) 32, 207, 264, 832, 1077, 1234
DpnII GATC 6 cut(s) 30, 205, 262, 830, 1075, 1232
EaeI YGGCCR 2 cut(s) 220, 1033
Eco130I CCWWGG 3 cut(s) 26, 372, 1083
Eco147I AGGCCT 1 cut(s) 283
Eco32I GATATC 1 cut(s) 333
Eco47I GGWCC 3 cut(s) 23, 539, 845
Eco81I CCTNAGG 1 cut(s) 1047
Eco88I CYCGRG 1 cut(s) 849
EcoNI CCTNNNNNAGG 1 cut(s) 758
EcoO109I RGGNCCY 2 cut(s) 23, 539
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 5 cut(s) 33, 510, 542, 1089, 1195
EcoRV GATATC 1 cut(s) 333
EcoT14I CCWWGG 3 cut(s) 26, 372, 1083
ErhI CCWWGG 3 cut(s) 26, 372, 1083
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 2 cut(s) 371, 901
FaqI GGGAC 5 cut(s) 36, 54, 525, 839, 1213
FatI CATG 2 cut(s) 367, 897
FauI CCCGC 1 cut(s) 31
FbaI TGATCA 1 cut(s) 205
FokI GGATG 5 cut(s) 488, 559, 1069, 1076, 1224
FspBI CTAG 6 cut(s) 228, 243, 621, 729, 1068, 1143
GsaI CCCAGC 1 cut(s) 1267
HaeIII GGCC 6 cut(s) 222, 283, 587, 764, 1035, 1088
Hin1II CATG 2 cut(s) 371, 901
HincII GTYRAC 2 cut(s) 702, 903
HindII GTYRAC 2 cut(s) 702, 903
HinfI GANTC 4 cut(s) 246, 299, 461, 852
HphI GGTGA 2 cut(s) 200, 1022
Hpy166II GTNNAC 4 cut(s) 131, 702, 726, 903
Hpy188I TCNGA 4 cut(s) 339, 682, 1075, 1099
Hpy188III TCNNGA 3 cut(s) 828, 997, 1046
Hpy8I GTNNAC 4 cut(s) 131, 702, 726, 903
HpyAV CCTTC 6 cut(s) 432, 946, 951, 1089, 1169, 1170
HpyCH4III ACNGT 5 cut(s) 49, 163, 520, 706, 967
HpyCH4V TGCA 3 cut(s) 637, 824, 910
HpyF10VI GCNNNNNNNGC 3 cut(s) 280, 770, 1260
HpyF3I CTNAG 6 cut(s) 90, 278, 597, 628, 669, 1047
Hsp92II CATG 2 cut(s) 371, 901
KflI GGGWCCC 1 cut(s) 539
KpnI GGTACC 1 cut(s) 936
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 6 cut(s) 30, 205, 262, 830, 1075, 1232
LmnI GCTCC 2 cut(s) 899, 1260
LweI GCATC 5 cut(s) 391, 537, 833, 1054, 1177
MaeI CTAG 6 cut(s) 228, 243, 621, 729, 1068, 1143
MaeIII GTNAC 1 cut(s) 211
MalI GATC 6 cut(s) 32, 207, 264, 832, 1077, 1234
MboI GATC 6 cut(s) 30, 205, 262, 830, 1075, 1232
MboII GAAGA 5 cut(s) 542, 706, 754, 757, 760
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 2 cut(s) 30, 830
MhlI GDGCHC 1 cut(s) 386
MlsI TGGCCA 2 cut(s) 222, 1035
MluNI TGGCCA 2 cut(s) 222, 1035
MlyI GAGTC 3 cut(s) 255, 455, 861
MmeI TCCRAC 1 cut(s) 1041
Mox20I TGGCCA 2 cut(s) 222, 1035
MscI TGGCCA 2 cut(s) 222, 1035
MseI TTAA 7 cut(s) 150, 198, 267, 525, 972, 1139, 1227
Msp20I TGGCCA 2 cut(s) 222, 1035
MspCI CTTAAG 1 cut(s) 524
MspR9I CCNGG 5 cut(s) 35, 512, 544, 1091, 1197
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 1256
MvaI CCWGG 5 cut(s) 35, 512, 544, 1091, 1197
MwoI GCNNNNNNNGC 3 cut(s) 280, 770, 1260
NdeII GATC 6 cut(s) 30, 205, 262, 830, 1075, 1232
NlaIII CATG 2 cut(s) 371, 901
NlaIV GGNNCC 7 cut(s) 24, 32, 540, 541, 832, 895, 934
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 371
NspV TTCGAA 1 cut(s) 121
PaeR7I CTCGAG 1 cut(s) 849
PceI AGGCCT 1 cut(s) 283
PctI GAATGC 1 cut(s) 1256
PfeI GAWTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 457
PleI GAGTC 3 cut(s) 254, 455, 860
PpsI GAGTC 3 cut(s) 254, 455, 860
PpuMI RGGWCCY 2 cut(s) 23, 539
Psp5II RGGWCCY 2 cut(s) 23, 539
Psp6I CCWGG 5 cut(s) 33, 510, 542, 1089, 1195
PspFI CCCAGC 1 cut(s) 1263
PspGI CCWGG 5 cut(s) 33, 510, 542, 1089, 1195
PspN4I GGNNCC 7 cut(s) 24, 32, 540, 541, 832, 895, 934
PspPI GGNCC 4 cut(s) 23, 539, 845, 1087
PspPPI RGGWCCY 2 cut(s) 23, 539
PspXI VCTCGAGB 1 cut(s) 849
PsuI RGATCY 2 cut(s) 30, 830
RsaI GTAC 3 cut(s) 655, 817, 934
RsaNI GTAC 3 cut(s) 654, 816, 933
SaqAI TTAA 7 cut(s) 150, 198, 267, 525, 972, 1139, 1227
Sau3AI GATC 6 cut(s) 30, 205, 262, 830, 1075, 1232
Sau96I GGNCC 4 cut(s) 23, 539, 845, 1087
SchI GAGTC 3 cut(s) 255, 455, 861
ScrFI CCNGG 5 cut(s) 35, 512, 544, 1091, 1197
SduI GDGCHC 1 cut(s) 386
SfaNI GCATC 5 cut(s) 391, 537, 833, 1054, 1177
SfcI CTRYAG 1 cut(s) 559
Sfr274I CTCGAG 1 cut(s) 849
SfuI TTCGAA 1 cut(s) 121
SinI GGWCC 3 cut(s) 23, 539, 845
SlaI CTCGAG 1 cut(s) 849
SmlI CTYRAG 2 cut(s) 524, 849
SmoI CTYRAG 2 cut(s) 524, 849
SpeI ACTAGT 1 cut(s) 1142
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 38
SspMI CTAG 6 cut(s) 228, 243, 621, 729, 1068, 1143
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 5 cut(s) 33, 510, 542, 1089, 1195
StyI CCWWGG 3 cut(s) 26, 372, 1083
TaaI ACNGT 5 cut(s) 49, 163, 520, 706, 967
TaqI TCGA 3 cut(s) 121, 348, 850
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 7 cut(s) 150, 198, 267, 525, 972, 1139, 1227
Tru9I TTAA 7 cut(s) 150, 198, 267, 525, 972, 1139, 1227
TscAI CASTG 4 cut(s) 166, 448, 864, 895
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 3 cut(s) 17, 587, 657
TspRI CASTG 4 cut(s) 166, 448, 864, 895
Van91I CCANNNNNTGG 1 cut(s) 457
Vha464I CTTAAG 1 cut(s) 524
VpaK11BI GGWCC 3 cut(s) 23, 539, 845
XagI CCTNNNNNAGG 1 cut(s) 758
XapI RAATTY 3 cut(s) 123, 236, 676
XceI RCATGY 1 cut(s) 371
XhoI CTCGAG 1 cut(s) 849
XspI CTAG 6 cut(s) 228, 243, 621, 729, 1068, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.