Rw4G032990

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000687
Physical Location & Seq
Reverse (-)
60061996 .. 60062875
880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G032990.1

Sequence Viewer

Length: 657 bp
ATGGACGTATTACCTGACGTTGTAATCAATGAAATCCTGAAATACCTATCTACCAGACAAGCCGTCCGGGCTAGCATTCTCTCCAAGCAATGGGAACGTGTTTGGTCTTCGGTCCCCGTATTAGATTTTGACGAGGATGAGAAAGAGCAACTTGGTGATGATGATGGCAGCTATCTTAGACACAAAAAGTTCGTCGAATCTGTGACAATGTGTTTGAAGCGGCGTGAGAAAGATAAGTTGTTACATAAAATGAGGCTTCGCATGAGATATCCCTGTAGAGACAGAGAAAACTGTTGCTCAAATCTTTTGAATAAGTGTTTGAGATTTGCCATAGACAGAAATGTTAAAGAATTATACATGGCTAAAACATATGGCAACGAATCATGTTTTAGCCTTCGAAATGCAGAATATTTGACTACAACAAAAATTGAAATTTCGAGTTCAAGCCTCAAAGCCTTGGAAGTTATCAGTTTTGCGGAGCGCCGGACTAGGCTTCAAGTTGAAGCTATGAATCTTGAATCCCTTAGAGTTGGTAGTAAAGAGGATAAGGGGCGGTCTTGTTCTTGGTACGACATTGATTTTGCATCTTGCGGGCAGCTTAGGAATTTAGAGTTGTTTGGTGCAATCTTTAAAGGTGTATGTGTCGGTGAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

218

Amino Acids

25.33

Weight (kDa)

8.52

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 40 3.9e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AciI CCGC 4 cut(s) 220, 476, 553, 591
AcsI RAATTY 2 cut(s) 432, 604
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 7 cut(s) 217, 310, 431, 444, 497, 503, 518
AhdI GACNNNNNGTC 1 cut(s) 62
AluBI AGCT 4 cut(s) 171, 506, 598, 652
AluI AGCT 4 cut(s) 171, 506, 598, 652
Alw26I GTCTC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 168, 595
ApoI RAATTY 2 cut(s) 432, 604
ArsI GACNNNNNNTTYG 6 cut(s) 177, 196, 209, 228, 563, 595
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 397
AsuNHI GCTAGC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 180, 607
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 2 cut(s) 72, 489
BfmI CTRYAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 484
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 3 cut(s) 169, 221, 596
BlsI GCNGC 3 cut(s) 170, 222, 597
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 112
BmeRI GACNNNNNGTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 593
BmtI GCTAGC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 599
Bpu14I TTCGAA 1 cut(s) 397
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 456
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 180, 607
BsiSI CCGG 2 cut(s) 67, 484
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 397
BspACI CCGC 4 cut(s) 220, 476, 553, 591
BspLI GGNNCC 1 cut(s) 114
BspOI GCTAGC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 456
Bst4CI ACNGT 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 397
BstC8I GCNNGC 2 cut(s) 73, 593
BstDEI CTNAG 3 cut(s) 176, 524, 599
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 1 cut(s) 483
BstMAI GTCTC 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 180, 607
BstV2I GAAGAC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 2 cut(s) 73, 593
CfoI GCGC 1 cut(s) 483
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 568
CviAII CATG 3 cut(s) 262, 358, 384
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 3 cut(s) 176, 524, 599
DraI TTTAAA 1 cut(s) 631
DriI GACNNNNNGTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 456
Eco32I GATATC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 112
EcoRV GATATC 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 3 cut(s) 265, 361, 387
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 98
FatI CATG 3 cut(s) 261, 357, 383
FauI CCCGC 1 cut(s) 584
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 3 cut(s) 169, 221, 596
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 169, 221, 596
FspBI CTAG 2 cut(s) 72, 489
GlaI GCGC 1 cut(s) 482
GluI GCNGC 3 cut(s) 169, 221, 596
HaeII RGCGCY 1 cut(s) 484
HapII CCGG 2 cut(s) 67, 484
HhaI GCGC 1 cut(s) 483
Hin1II CATG 3 cut(s) 265, 361, 387
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HinfI GANTC 4 cut(s) 197, 380, 511, 518
HpaII CCGG 2 cut(s) 67, 484
HphI GGTGA 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 37, 515
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 3 cut(s) 6, 18, 97
HpyCH4V TGCA 3 cut(s) 404, 584, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 176, 524, 599
HpySE526I ACGT 3 cut(s) 6, 18, 97
Hsp92II CATG 3 cut(s) 265, 361, 387
HspAI GCGC 1 cut(s) 481
LmnI GCTCC 1 cut(s) 478
LpnPI CCDG 6 cut(s) 27, 50, 67, 80, 286, 497
Lsp1109I GCAGC 2 cut(s) 180, 607
LweI GCATC 1 cut(s) 593
MaeI CTAG 2 cut(s) 72, 489
MaeII ACGT 3 cut(s) 6, 18, 97
MaeIII GTNAC 2 cut(s) 202, 240
MboII GAAGA 1 cut(s) 99
MluCI AATT 4 cut(s) 350, 426, 432, 604
MnlI CCTC 4 cut(s) 127, 246, 458, 535
MseI TTAA 2 cut(s) 345, 630
MspI CCGG 2 cut(s) 67, 484
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 68
NdeI CATATG 1 cut(s) 370
NheI GCTAGC 1 cut(s) 71
NlaIII CATG 3 cut(s) 265, 361, 387
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 202
NspV TTCGAA 1 cut(s) 397
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 4 cut(s) 197, 380, 511, 518
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 3 cut(s) 170, 222, 597
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 112
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
SaqAI TTAA 2 cut(s) 345, 630
SatI GCNGC 3 cut(s) 169, 221, 596
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 68
SfaNI GCATC 1 cut(s) 593
SfcI CTRYAG 1 cut(s) 274
SfuI TTCGAA 1 cut(s) 397
SinI GGWCC 1 cut(s) 112
Sse9I AATT 4 cut(s) 350, 426, 432, 604
SsiI CCGC 4 cut(s) 220, 476, 553, 591
SspI AATATT 1 cut(s) 410
SspMI CTAG 2 cut(s) 72, 489
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 3 cut(s) 9, 21, 100
TaqI TCGA 3 cut(s) 195, 397, 437
TaqII GACCGA 1 cut(s) 100
TasI AATT 4 cut(s) 350, 426, 432, 604
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 4 cut(s) 197, 380, 511, 518
Tru1I TTAA 2 cut(s) 345, 630
Tru9I TTAA 2 cut(s) 345, 630
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 2 cut(s) 168, 595
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 45, 524
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 2 cut(s) 432, 604
XspI CTAG 2 cut(s) 72, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.