Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007154.1

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Forward (+)

25237 .. 25569

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007154.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgaaaagaaaaggtacaggagtcaacactgcacggagaaagaaaaagagcaaacagaaggaagatgacgaaaacgagagcaccagcggcatggtcgtggacacatacagatcccaattacctgaccttgttgtcgaacgaatcctctctctattttccaccagactcgctgcccgagctagcattctttctaagcaatgggcaagattatggctttcagttccggtgattgatctggatgaggatagggagacgccatgcgaagatcaacgctcaaagttcatgaacttcatgagaaggtacttgaagctccgtgagaaaatacgtgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

110

Amino Acids

12.95

Weight (kDa)

10.06

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	2 cut(s)	16, 302
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	2 cut(s)	179, 310
AluI	AGCT	2 cut(s)	179, 310
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	238
AsuNHI	GCTAGC	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	174
BaeI	ACNNNNGTAYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	88, 171
BlsI	GCNGC	2 cut(s)	89, 172
BmeT110I	CYCGRG	1 cut(s)	174
BmtI	GCTAGC	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	245
BsmBI	CGTCTC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	110, 232, 265
BspACI	CCGC	1 cut(s)	87
BspHI	TCATGA	2 cut(s)	282, 291
BspOI	GCTAGC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	203
BssMI	GATC	3 cut(s)	110, 232, 265
BssNI	GRCGYC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	3 cut(s)	113, 235, 268
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	3 cut(s)	110, 232, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 176
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	181
CciI	TCATGA	2 cut(s)	282, 291
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	15, 301
CviAII	CATG	4 cut(s)	91, 258, 283, 292
CviJI	RGCY	3 cut(s)	179, 214, 310
CviKI_1	RGCY	3 cut(s)	179, 214, 310
CviQI	GTAC	2 cut(s)	15, 301
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	112, 234, 267
DpnII	GATC	3 cut(s)	110, 232, 265
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	4 cut(s)	94, 261, 286, 295
FaiI	YATR	7 cut(s)	92, 106, 211, 259, 284, 293, 331
FatI	CATG	4 cut(s)	90, 257, 282, 291
Fnu4HI	GCNGC	2 cut(s)	88, 171
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	88, 171
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	88, 171
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	4 cut(s)	94, 261, 286, 295
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	21, 141, 165
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	25, 100
Hpy188III	TCNNGA	3 cut(s)	236, 283, 292
Hpy8I	GTNNAC	2 cut(s)	25, 100
HpyAV	CCTTC	2 cut(s)	52, 291
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	32, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 176
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	4 cut(s)	94, 261, 286, 295
Kzo9I	GATC	3 cut(s)	110, 232, 265
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	6 cut(s)	3, 97, 135, 175, 221, 237
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	325
MalI	GATC	3 cut(s)	112, 234, 267
MboI	GATC	3 cut(s)	110, 232, 265
MboII	GAAGA	2 cut(s)	74, 275
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	30, 159
MnlI	CCTC	2 cut(s)	155, 235
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	87, 176
NdeII	GATC	3 cut(s)	110, 232, 265
NheI	GCTAGC	1 cut(s)	179
NlaIII	CATG	4 cut(s)	94, 261, 286, 295
PagI	TCATGA	2 cut(s)	282, 291
PctI	GAATGC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	89, 172
PleI	GAGTC	2 cut(s)	29, 159
PpsI	GAGTC	2 cut(s)	29, 159
Ppu21I	YACGTR	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	16, 302
RsaNI	GTAC	2 cut(s)	15, 301
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	2 cut(s)	88, 171
Sau3AI	GATC	3 cut(s)	110, 232, 265
SchI	GAGTC	2 cut(s)	30, 159
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	7 cut(s)	16, 124, 129, 181, 302, 312, 328
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	116
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	141
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	4 cut(s)	17, 271, 280, 299
TspGWI	ACGGA	2 cut(s)	49, 302
TspRI	CASTG	1 cut(s)	34
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.