Rroxscaffold_3G00268660

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000687
Physical Location & Seq
Reverse (-)
61738947 .. 61740424
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268660.1

Sequence Viewer

Length: 1299 bp
ATGGCTCAGAAGAGAAAAACTTCATGCTGCAGTTACCAGGACGCAAAGACAAAAAAGCAGAAAGACGATGAACAGAACCAAAACCCTAGCACGGTCGTCGACACATACACACCCGAATTTCCTGACCTTGTCATCCATCAAATTCTCTTTATCCTCAATTTCCATTCCCCCAAGCTGGCCGCTCGGGCCAGCCTTGTTTCCAAGCAATGGGCACGCATATGGTTTTCGCTTCCAGTACTAGCTTTCGACGAGTATGAGGACGATCCGGAGCCGTACACTGATCACAAGGCTCGGCGCAAGATGTTCATGACCTTCTTGCAAACCCGTTTGAAGAACCGAGAGAAAGATAAGTACGGGATACACAAGTTCGGGCTTCGTATGAAGTACTTGGGAGGTTGTAGCACCATAGAAAAGTGCTTGAGATTCGCTGCTGAGAGAAACGTTAAAGAGTTAGACATAAGTTTTATAAAACAAAGAATAGCGGGAGTGAGATGCAAACCCTTCCACTTATCACCACTGCTTCTCAATAGTGCAAAATCTCTAACCATTTTAAAGTTGGAGGATGTGAAACTCCGAGGGGATGGCACTATAATAAGCCTTCCGTCTTTGAAAACTATGTTCCTCAACCATTTGCGAAGTAATTTGACTTTCTTGCAATTACTTTCGGGGTGTCCTTTGGTTGAGAATTTGTTGTTAAATTCATGTGTTGGCTTCTGTGGTGTACTTTCAAGTTCGAGCCTCAAATCTTTGGAAGTTATGCAATGCAAGTCATTGCGAGTTCAAGCTGAGAATCTTGAATCTATTAAGCTGGATGGCAATGTACCCTTTGATATCACCTCTTGTGAAAAAATTAGACGTCTAGAGCTCATTTGGAAAAGCTTTTCATCCGAATATTTTGAAGGCTTCAATTCAAAATTTCCCCTCCTTGAGAGTTTGATATTAAATAGATGCCAGGGAAAGTATCAATGTCATATATCTATCAACTGTCCAAATTTATCGGAGGCTAAAATCATAGTTCAGGATTGGATACCCAAATACGGGCAACGGAGGCATTCTAATCTAATAACTTTTCTTCGAAATTTTAATCGCTCCAGAAAACTGAGTCTATACTTTAGTAATGCGGAGGCTCTTATATTTCCAGAAAAGATGAGAAGCAAATGCTCTCCGCCATTACCAACTCTTGAGCATCTTCAGGTAGAGATAAGTGGTAAATCTACAATAGCAGTGACAGATTCTGTCTTGAGGGACTCCTTGCAATGGATGGCACCGTCTTCTGTAGTTTCTATCCACAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

432

Amino Acids

49.56

Weight (kDa)

9.41

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 137 - 261 4.3e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AatII GACGTC 1 cut(s) 859
AccB1I GGYRCC 1 cut(s) 1264
AccB7I CCANNNNNTGG 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 4 cut(s) 180, 482, 1121, 1166
AclI AACGTT 1 cut(s) 441
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 7 cut(s) 116, 141, 685, 697, 914, 991, 1078
AcuI CTGAAG 1 cut(s) 1175
AcyI GRCGYC 1 cut(s) 856
AfaI GTAC 6 cut(s) 237, 275, 353, 386, 723, 822
AfiI CCNNNNNNNGG 6 cut(s) 91, 175, 207, 1037, 1038, 1257
AgsI TTSAA 8 cut(s) 331, 610, 729, 782, 797, 899, 907, 912
AjnI CCWGG 2 cut(s) 36, 951
AluBI AGCT 6 cut(s) 175, 242, 785, 808, 865, 879
AluI AGCT 6 cut(s) 175, 242, 785, 808, 865, 879
Alw21I GWGCWC 1 cut(s) 867
AlwI GGATC 1 cut(s) 257
AlwNI CAGNNNCTG 1 cut(s) 1235
Ama87I CYCGRG 1 cut(s) 183
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 2 cut(s) 177, 186
ApeKI GCWGC 2 cut(s) 27, 428
ApoI RAATTY 7 cut(s) 116, 141, 685, 697, 914, 991, 1078
Asp700I GAANNNNTTC 1 cut(s) 19
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 504, 826
AsuII TTCGAA 1 cut(s) 1075
AvaI CYCGRG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 214
BaeI ACNNNNGTAYC 2 cut(s) 350, 383
BanI GGYRCC 1 cut(s) 1264
BanII GRGCYC 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 1263
Bbv12I GWGCWC 1 cut(s) 867
BbvI GCAGC 2 cut(s) 14, 415
BccI CCATC 4 cut(s) 144, 575, 806, 1255
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 2 cut(s) 38, 953
BciVI GTATCC 2 cut(s) 351, 1020
BclI TGATCA 1 cut(s) 280
BfaI CTAG 3 cut(s) 87, 239, 860
BfmI CTRYAG 2 cut(s) 28, 1275
BfuI GTATCC 2 cut(s) 351, 1020
BglI GCCNNNNNGGC 1 cut(s) 185
BisI GCNGC 3 cut(s) 28, 180, 429
BlsI GCNGC 3 cut(s) 29, 181, 430
BmcAI AGTACT 2 cut(s) 237, 386
Bme1390I CCNGG 2 cut(s) 38, 953
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 270, 1266
BmrFI CCNGG 2 cut(s) 38, 953
BmsI GCATC 3 cut(s) 482, 938, 1195
BpiI GAAGAC 1 cut(s) 1263
BpmI CTGGAG 1 cut(s) 1075
Bpu14I TTCGAA 1 cut(s) 1075
BpuEI CTTGAG 4 cut(s) 439, 947, 1202, 1261
BsaHI GRCGYC 1 cut(s) 856
BsaJI CCNNGG 2 cut(s) 574, 952
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 6 cut(s) 91, 175, 207, 1037, 1038, 1257
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 5 cut(s) 212, 767, 770, 823, 1262
BseAI TCCGGA 1 cut(s) 265
BseBI CCWGG 2 cut(s) 38, 953
BseDI CCNNGG 2 cut(s) 574, 952
BseGI GGATG 6 cut(s) 132, 568, 586, 817, 884, 1266
BseLI CCNNNNNNNGG 6 cut(s) 91, 175, 207, 1037, 1038, 1257
BseMI GCAATG 5 cut(s) 212, 767, 770, 823, 1262
BseMII CTCAG 4 cut(s) 20, 423, 777, 1091
BseNI ACTGG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 2 cut(s) 14, 415
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 179, 188
BshNI GGYRCC 1 cut(s) 1264
BsiEI CGRYCG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 867
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 1259
BslI CCNNNNNNNGG 6 cut(s) 91, 175, 207, 1037, 1038, 1257
BsmFI GGGAC 1 cut(s) 1259
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 2 cut(s) 179, 188
BsoBI CYCGRG 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 1075
Bsp1286I GDGCHC 2 cut(s) 214, 867
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 2 cut(s) 262, 280
BspACI CCGC 4 cut(s) 180, 482, 1121, 1166
BspANI GGCC 2 cut(s) 179, 188
BspCNI CTCAG 4 cut(s) 19, 424, 778, 1092
BspEI TCCGGA 1 cut(s) 265
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 270, 1266
BspMAI CTGCAG 1 cut(s) 32
BspPI GGATC 1 cut(s) 257
BspT104I TTCGAA 1 cut(s) 1075
BspT107I GGYRCC 1 cut(s) 1264
BsrBI CCGCTC 1 cut(s) 182
BsrDI GCAATG 5 cut(s) 212, 767, 770, 823, 1262
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 574, 952
BssMI GATC 2 cut(s) 262, 280
BssNI GRCGYC 1 cut(s) 856
Bst2UI CCWGG 2 cut(s) 38, 953
Bst4CI ACNGT 3 cut(s) 94, 986, 1269
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 856
BstBI TTCGAA 1 cut(s) 1075
BstC8I GCNNGC 3 cut(s) 177, 190, 214
BstDEI CTNAG 4 cut(s) 6, 432, 786, 1100
BstF5I GGATG 6 cut(s) 132, 568, 586, 817, 884, 1266
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 2 cut(s) 265, 283
BstMBI GATC 2 cut(s) 262, 280
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 185, 1048
BstNI CCWGG 2 cut(s) 38, 953
BstSCI CCNGG 2 cut(s) 36, 951
BstSFI CTRYAG 2 cut(s) 28, 1275
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 14, 415
BstV2I GAAGAC 1 cut(s) 1263
BsuI GTATCC 2 cut(s) 351, 1020
BsuRI GGCC 2 cut(s) 179, 188
BtsCI GGATG 6 cut(s) 132, 568, 586, 817, 884, 1266
BtsI GCAGTG 2 cut(s) 515, 1230
BtsIMutI CAGTG 3 cut(s) 276, 515, 1230
Cac8I GCNNGC 3 cut(s) 177, 190, 214
CaiI CAGNNNCTG 1 cut(s) 1235
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 50
Csp6I GTAC 6 cut(s) 236, 274, 352, 385, 722, 821
CviAII CATG 3 cut(s) 24, 307, 702
CviQI GTAC 6 cut(s) 236, 274, 352, 385, 722, 821
DdeI CTNAG 4 cut(s) 6, 432, 786, 1100
DpnI GATC 2 cut(s) 264, 282
DpnII GATC 2 cut(s) 262, 280
DraI TTTAAA 1 cut(s) 552
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
EciI GGCGGA 1 cut(s) 1155
Ecl136II GAGCTC 1 cut(s) 865
Eco24I GRGCYC 1 cut(s) 867
Eco32I GATATC 1 cut(s) 832
Eco53kI GAGCTC 1 cut(s) 865
Eco57I CTGAAG 1 cut(s) 1175
Eco88I CYCGRG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 865
EcoRII CCWGG 2 cut(s) 36, 951
EcoRV GATATC 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 867
FaeI CATG 3 cut(s) 27, 310, 705
FaqI GGGAC 1 cut(s) 1259
FatI CATG 3 cut(s) 23, 306, 701
FauI CCCGC 1 cut(s) 475
FauNDI CATATG 1 cut(s) 218
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 28, 180, 429
FokI GGATG 6 cut(s) 119, 575, 593, 824, 871, 1273
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 3 cut(s) 28, 180, 429
FspBI CTAG 3 cut(s) 87, 239, 860
GlaI GCGC 1 cut(s) 296
GluI GCNGC 3 cut(s) 28, 180, 429
GsuI CTGGAG 1 cut(s) 1075
HaeIII GGCC 2 cut(s) 179, 188
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 856
Hin1II CATG 3 cut(s) 27, 310, 705
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 6 cut(s) 423, 790, 797, 1102, 1232, 1247
HpaII CCGG 1 cut(s) 266
HphI GGTGA 2 cut(s) 504, 826
Hpy166II GTNNAC 3 cut(s) 100, 276, 722
Hpy188I TCNGA 4 cut(s) 9, 575, 889, 1000
Hpy8I GTNNAC 3 cut(s) 100, 276, 722
Hpy99I CGWCG 2 cut(s) 101, 251
HpyAV CCTTC 4 cut(s) 322, 511, 608, 893
HpyCH4III ACNGT 3 cut(s) 94, 986, 1269
HpyCH4IV ACGT 2 cut(s) 441, 856
HpyCH4V TGCA 8 cut(s) 30, 319, 495, 533, 655, 760, 765, 1255
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 1048
HpyF3I CTNAG 4 cut(s) 6, 432, 786, 1100
HpySE526I ACGT 2 cut(s) 441, 856
Hsp92I GRCGYC 1 cut(s) 856
Hsp92II CATG 3 cut(s) 27, 310, 705
HspAI GCGC 1 cut(s) 295
Kpn2I TCCGGA 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 262, 280
LmnI GCTCC 2 cut(s) 268, 1094
Lsp1109I GCAGC 2 cut(s) 14, 415
LweI GCATC 3 cut(s) 482, 938, 1195
MaeI CTAG 3 cut(s) 87, 239, 860
MaeII ACGT 2 cut(s) 441, 856
MaeIII GTNAC 2 cut(s) 32, 1225
MalI GATC 2 cut(s) 264, 282
MbiI CCGCTC 1 cut(s) 182
MboI GATC 2 cut(s) 262, 280
MboII GAAGA 5 cut(s) 22, 343, 1064, 1181, 1263
MhlI GDGCHC 2 cut(s) 214, 867
MlyI GAGTC 2 cut(s) 1111, 1241
MmeI TCCRAC 1 cut(s) 537
MroI TCCGGA 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 19
MseI TTAA 6 cut(s) 444, 551, 695, 804, 941, 1083
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 2 cut(s) 38, 953
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 2 cut(s) 38, 953
MwoI GCNNNNNNNGC 2 cut(s) 185, 1048
NdeI CATATG 1 cut(s) 218
NdeII GATC 2 cut(s) 262, 280
NlaIII CATG 3 cut(s) 27, 310, 705
NlaIV GGNNCC 2 cut(s) 270, 1266
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 1225
NspV TTCGAA 1 cut(s) 1075
PagI TCATGA 1 cut(s) 306
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 4 cut(s) 423, 790, 797, 1232
PflFI GACNNNGTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 3 cut(s) 29, 181, 430
PleI GAGTC 2 cut(s) 1110, 1241
PpsI GAGTC 2 cut(s) 1110, 1241
PsiI TTATAA 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 867
Psp1406I AACGTT 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 36, 951
PspGI CCWGG 2 cut(s) 36, 951
PspN4I GGNNCC 2 cut(s) 270, 1266
PspPI GGNCC 1 cut(s) 186
PstI CTGCAG 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 1235
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 6 cut(s) 237, 275, 353, 386, 723, 822
RsaNI GTAC 6 cut(s) 236, 274, 352, 385, 722, 821
RseI CAYNNNNRTG 1 cut(s) 217
SacI GAGCTC 1 cut(s) 867
SalI GTCGAC 1 cut(s) 98
SaqAI TTAA 6 cut(s) 444, 551, 695, 804, 941, 1083
SatI GCNGC 3 cut(s) 28, 180, 429
Sau3AI GATC 2 cut(s) 262, 280
Sau96I GGNCC 1 cut(s) 186
ScaI AGTACT 2 cut(s) 237, 386
SchI GAGTC 2 cut(s) 1111, 1241
ScrFI CCNGG 2 cut(s) 38, 953
SduI GDGCHC 2 cut(s) 214, 867
SfaNI GCATC 3 cut(s) 482, 938, 1195
SfcI CTRYAG 2 cut(s) 28, 1275
SfiI GGCCNNNNNGGCC 1 cut(s) 185
SfuI TTCGAA 1 cut(s) 1075
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 4 cut(s) 418, 926, 1181, 1240
SmoI CTYRAG 4 cut(s) 418, 926, 1181, 1240
SsiI CCGC 4 cut(s) 180, 482, 1121, 1166
SspI AATATT 1 cut(s) 893
SspMI CTAG 3 cut(s) 87, 239, 860
SstI GAGCTC 1 cut(s) 867
StyD4I CCNGG 2 cut(s) 36, 951
TaaI ACNGT 3 cut(s) 94, 986, 1269
TaiI ACGT 2 cut(s) 444, 859
TaqI TCGA 4 cut(s) 99, 246, 734, 1075
TatI WGTACW 3 cut(s) 235, 384, 721
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 4 cut(s) 423, 790, 797, 1232
Tru1I TTAA 6 cut(s) 444, 551, 695, 804, 941, 1083
Tru9I TTAA 6 cut(s) 444, 551, 695, 804, 941, 1083
TscAI CASTG 3 cut(s) 283, 522, 1230
TseFI GTSAC 1 cut(s) 1225
TseI GCWGC 2 cut(s) 27, 428
Tsp45I GTSAC 1 cut(s) 1225
TspDTI ATGAA 6 cut(s) 12, 84, 295, 395, 690, 873
TspGWI ACGGA 2 cut(s) 591, 1060
TspRI CASTG 3 cut(s) 283, 522, 1230
Tth111I GACNNNGTC 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 207
XapI RAATTY 7 cut(s) 116, 141, 685, 697, 914, 991, 1078
XbaI TCTAGA 1 cut(s) 859
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 3 cut(s) 87, 239, 860
ZraI GACGTC 1 cut(s) 857
ZrmI AGTACT 2 cut(s) 237, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.