Rh4BG106300

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
18219472 .. 18220797
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG106300.1

Sequence Viewer

Length: 408 bp
ATGAGCAATGAGGACTTCAACATTGCCTCTTGTCGGAAACTGAAGAATCTGGAGTTTGTTAGATCAAGATTTGCTTACGGATGGTTTGAAGGACTCGATTCCAGATTTCCACTGCTCGAGGGCTTGATTTTACATTATTGCGTGCCCTTGGAATCTATCAATGTGGTTAGTCGAAGCTTGCTACGGTTTTCCTTCTGTCATTATGGAAATAGTTTGACCACCTTTTCCATCAAGGCTCCAAACCTATCGGAGGAGGGGCCCACCTATCTATGGAATATGTTTCGTATACAATGGTTGATTGGAAACTTTGATTACTGTGTGAGAAGATGGAGTTGCATGCTATTGATGACAAGAGTCCTTGAGAGGGAGATTTGTAAGCAAACGCAGAGTTGTATAAGCACCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.96

Weight (kDa)

8.75

Isoelectric Point (pI)

74.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 62
AfiI CCNNNNNNNGG 4 cut(s) 33, 250, 270, 364
AgsI TTSAA 2 cut(s) 19, 89
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 1 cut(s) 257
ApaI GGGCCC 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 257, 258
AvaI CYCGRG 1 cut(s) 116
BaeGI GKGCMC 2 cut(s) 147, 261
BanII GRGCYC 1 cut(s) 261
BccI CCATC 3 cut(s) 75, 236, 321
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 257, 258
BmiI GGNNCC 3 cut(s) 237, 258, 259
BoxI GACNNNNGTC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 250, 270, 364
Bse3DI GCAATG 2 cut(s) 13, 21
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 4 cut(s) 33, 250, 270, 364
BseMI GCAATG 2 cut(s) 13, 21
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 2 cut(s) 147, 261
BshFI GGCC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 116
BslI CCNNNNNNNGG 4 cut(s) 33, 250, 270, 364
BsnI GGCC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 116
Bsp120I GGGCCC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 147, 261
Bsp143I GATC 1 cut(s) 62
BspANI GGCC 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 237, 258, 259
BsrDI GCAATG 2 cut(s) 13, 21
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 62
BssNAI GTATAC 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 147
Bst1107I GTATAC 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 186, 317
BstC8I GCNNGC 3 cut(s) 143, 179, 338
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 340
BstPAI GACNNNNGTC 1 cut(s) 353
BstSLI GKGCMC 2 cut(s) 147, 261
BstZ17I GTATAC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 143, 179, 338
Cfr13I GGNCC 2 cut(s) 257, 258
CviAII CATG 1 cut(s) 337
CviJI RGCY 4 cut(s) 123, 177, 236, 259
CviKI_1 RGCY 4 cut(s) 123, 177, 236, 259
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 340
FaiI YATR 6 cut(s) 204, 271, 278, 287, 338, 395
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FatI CATG 1 cut(s) 336
FblI GTMKAC 1 cut(s) 286
FokI GGATG 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 259
Hin1II CATG 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 5 cut(s) 46, 93, 98, 152, 354
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 36, 250
Hpy188III TCNNGA 3 cut(s) 50, 66, 102
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 83, 202
HpyCH4III ACNGT 2 cut(s) 186, 317
HpyCH4V TGCA 1 cut(s) 336
Hsp92II CATG 1 cut(s) 340
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 2 cut(s) 35, 115
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 2 cut(s) 55, 336
MhlI GDGCHC 2 cut(s) 147, 261
MlyI GAGTC 2 cut(s) 87, 363
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 6 cut(s) 4, 37, 112, 244, 247, 357
NdeII GATC 1 cut(s) 62
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 3 cut(s) 237, 258, 259
NspI RCATGY 1 cut(s) 340
PaeI GCATGC 1 cut(s) 340
PaeR7I CTCGAG 1 cut(s) 116
PfeI GAWTC 3 cut(s) 46, 98, 152
PleI GAGTC 2 cut(s) 87, 362
PpsI GAGTC 2 cut(s) 87, 362
PshAI GACNNNNGTC 1 cut(s) 353
PspN4I GGNNCC 3 cut(s) 237, 258, 259
PspOMI GGGCCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 257, 258
PspXI VCTCGAGB 1 cut(s) 116
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 257, 258
SchI GAGTC 2 cut(s) 87, 363
SduI GDGCHC 2 cut(s) 147, 261
SetI ASST 4 cut(s) 179, 224, 246, 266
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 116, 359
SmoI CTYRAG 2 cut(s) 116, 359
SphI GCATGC 1 cut(s) 340
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 186, 317
TaqI TCGA 3 cut(s) 96, 117, 172
TfiI GAWTC 3 cut(s) 46, 98, 152
TscAI CASTG 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 117
XagI CCTNNNNNAGG 1 cut(s) 248
XceI RCATGY 1 cut(s) 340
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.