Rh7AG071500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000687
Physical Location & Seq
Reverse (-)
5075292 .. 5076080
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG071500.1

Sequence Viewer

Length: 789 bp
ATGGCTAAGAAGAGAAAAACTTCAGGCTGCAGCTACCACGACTCAAAGACAAACAAAAAGAAAGACGATGAACAAAACAAAAGCCCTAGCACGGTCTTTGAAGTCGACAGATACGTACCCGAATTGCCTGACCTTGTTATCCACCAAATCCTCTTATTTCTCACTCTCCTTTCCCCCAAGCACGCCGCTCGGGCCAGCCTTGTTTCCAAGCAATGGGCAAGCGTATGGTTTTCGCTTCCGGTACTACCTTTTGAGGAGTACGATCAGGATCCTAAGCCATACACTGATGATAAGGCTCGGCGAAAACAGTTCATCAACTTCGTGAATACCAATTTGAAGCGCTGGGCGAAAGATAAGCGCGACTTAGATAAGTTGGGGCTTCGTATGAAATACTCGGCAAGTCGTGGCACCATACAAAAGTGCTTGAGTTTTGCTGTTGATAGAAACGTTAAAGAGATAGACATAAGTTTTACAAGAGAAAGCATAGCTGGGCAGAGATGCAAAACCTTCTCCTTATCACCAATGCTTCTCAACAGTGCAAAATCTCTAACCATTCTAAAGTTGGAGAATGTAAATCTCCTAAGGGACTTCACTAGTGCTATAATAAGCCTTCCGTCTTTGAAAACTATGTCCCTCAACCATTTGCGAAGTAATTTGACATTCTTGCAATTACTTTCGGGGTGTCCTTTGCTTGAGAATTTGTTGTTAAATTCATGTGTTGGCTTCCACGGTGTACTTTCAAGTTCGAGCCTCAAATCCCTGGACGTTGTGCAATGCAAGTCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

262

Amino Acids

29.71

Weight (kDa)

9.62

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 143 - 259 1.2e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 360
AciI CCGC 1 cut(s) 186
AclI AACGTT 1 cut(s) 447
AclWI GGATC 2 cut(s) 263, 276
AcsI RAATTY 2 cut(s) 697, 709
AcuI CTGAAG 1 cut(s) 6
AfaI GTAC 4 cut(s) 117, 243, 260, 735
AfeI AGCGCT 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 91, 213
AgsI TTSAA 4 cut(s) 101, 337, 622, 741
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 1 cut(s) 759
AluBI AGCT 2 cut(s) 33, 488
AluI AGCT 2 cut(s) 33, 488
AlwI GGATC 2 cut(s) 263, 276
Ama87I CYCGRG 1 cut(s) 189
Aor51HI AGCGCT 1 cut(s) 341
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 27, 30
ApoI RAATTY 2 cut(s) 697, 709
Asp700I GAANNNNTTC 1 cut(s) 19
AspLEI GCGC 2 cut(s) 342, 360
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 510
AvaI CYCGRG 1 cut(s) 189
AxyI CCTNAGG 1 cut(s) 581
BamHI GGATCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 14, 42
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 1 cut(s) 761
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 2 cut(s) 87, 594
BfmI CTRYAG 1 cut(s) 28
BfoI RGCGCY 1 cut(s) 343
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 3 cut(s) 28, 31, 186
BlsI GCNGC 3 cut(s) 29, 32, 187
Bme1390I CCNGG 1 cut(s) 761
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 270, 409
BmrFI CCNGG 1 cut(s) 761
BmsI GCATC 1 cut(s) 488
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 445, 713
BsaAI YACGTR 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 727, 759
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 213
Bse21I CCTNAGG 1 cut(s) 581
Bse3DI GCAATG 2 cut(s) 218, 779
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 761
BseDI CCNNGG 2 cut(s) 727, 759
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 91, 213
BseMI GCAATG 2 cut(s) 218, 779
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 14, 42
BseYI CCCAGC 2 cut(s) 342, 488
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 2 cut(s) 599, 616
BslI CCNNNNNNNGG 2 cut(s) 91, 213
BsmFI GGGAC 2 cut(s) 599, 616
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 189
Bsp143I GATC 2 cut(s) 262, 268
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 194
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 2 cut(s) 270, 409
BspMAI CTGCAG 1 cut(s) 32
BspPI GGATC 2 cut(s) 263, 276
BspT107I GGYRCC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 188
BsrDI GCAATG 2 cut(s) 218, 779
BssECI CCNNGG 2 cut(s) 727, 759
BssMI GATC 2 cut(s) 262, 268
Bst2UI CCWGG 1 cut(s) 761
Bst4CI ACNGT 4 cut(s) 94, 309, 536, 731
Bst6I CTCTTC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 115
BstC8I GCNNGC 3 cut(s) 183, 196, 220
BstDEI CTNAG 4 cut(s) 6, 273, 364, 581
BstDSI CCRYGG 1 cut(s) 727
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 2 cut(s) 342, 360
BstKTI GATC 2 cut(s) 265, 271
BstMBI GATC 2 cut(s) 262, 268
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 761
BstSCI CCNGG 1 cut(s) 759
BstSFI CTRYAG 1 cut(s) 28
BstSNI TACGTA 1 cut(s) 115
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 14, 42
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 581
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 727
BtsIMutI CAGTG 2 cut(s) 282, 541
Cac8I GCNNGC 3 cut(s) 183, 196, 220
CfoI GCGC 2 cut(s) 342, 360
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 4 cut(s) 116, 242, 259, 734
CviAII CATG 1 cut(s) 714
CviQI GTAC 4 cut(s) 116, 242, 259, 734
DdeI CTNAG 4 cut(s) 6, 273, 364, 581
DpnI GATC 2 cut(s) 264, 270
DpnII GATC 2 cut(s) 262, 268
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco105I TACGTA 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 6
Eco81I CCTNAGG 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 759
FaeI CATG 1 cut(s) 717
FaiI YATR 9 cut(s) 226, 280, 386, 413, 464, 485, 602, 629, 715
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 2 cut(s) 599, 616
FatI CATG 1 cut(s) 713
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 28, 31, 186
Fsp4HI GCNGC 3 cut(s) 28, 31, 186
FspBI CTAG 2 cut(s) 87, 594
GlaI GCGC 2 cut(s) 341, 359
GluI GCNGC 3 cut(s) 28, 31, 186
GsaI CCCAGC 2 cut(s) 346, 492
HaeII RGCGCY 1 cut(s) 343
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 239
HhaI GCGC 2 cut(s) 342, 360
Hin1II CATG 1 cut(s) 717
Hin6I GCGC 2 cut(s) 340, 358
HinP1I GCGC 2 cut(s) 340, 358
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 510
Hpy166II GTNNAC 2 cut(s) 106, 734
Hpy188III TCNNGA 2 cut(s) 266, 322
Hpy8I GTNNAC 2 cut(s) 106, 734
HpyAV CCTTC 2 cut(s) 517, 620
HpyCH4III ACNGT 4 cut(s) 94, 309, 536, 731
HpyCH4IV ACGT 3 cut(s) 114, 447, 765
HpyCH4V TGCA 6 cut(s) 30, 501, 539, 667, 772, 777
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 4 cut(s) 6, 273, 364, 581
HpySE526I ACGT 3 cut(s) 114, 447, 765
Hsp92II CATG 1 cut(s) 717
HspAI GCGC 2 cut(s) 340, 358
Kzo9I GATC 2 cut(s) 262, 268
LpnPI CCDG 9 cut(s) 9, 141, 208, 251, 252, 328, 474, 746, 773
Lsp1109I GCAGC 2 cut(s) 14, 42
LweI GCATC 1 cut(s) 488
MaeI CTAG 2 cut(s) 87, 594
MaeII ACGT 3 cut(s) 114, 447, 765
MalI GATC 2 cut(s) 264, 270
MbiI CCGCTC 1 cut(s) 188
MboI GATC 2 cut(s) 262, 268
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 268
MluCI AATT 6 cut(s) 122, 331, 652, 668, 697, 709
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 4 cut(s) 161, 247, 644, 761
MroXI GAANNNNTTC 1 cut(s) 19
MseI TTAA 2 cut(s) 450, 707
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 761
MvaI CCWGG 1 cut(s) 761
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 262, 268
NlaIII CATG 1 cut(s) 717
NlaIV GGNNCC 2 cut(s) 270, 409
NmeAIII GCCGAG 2 cut(s) 277, 374
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 19
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 3 cut(s) 29, 32, 187
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Ppu21I YACGTR 1 cut(s) 115
Psp1406I AACGTT 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 759
PspFI CCCAGC 2 cut(s) 342, 488
PspGI CCWGG 1 cut(s) 759
PspN4I GGNNCC 2 cut(s) 270, 409
PspPI GGNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 4 cut(s) 117, 243, 260, 735
RsaNI GTAC 4 cut(s) 116, 242, 259, 734
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 450, 707
SatI GCNGC 3 cut(s) 28, 31, 186
Sau3AI GATC 2 cut(s) 262, 268
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 761
SetI ASST 8 cut(s) 35, 117, 135, 250, 450, 490, 509, 768
SfaNI GCATC 1 cut(s) 488
SfcI CTRYAG 1 cut(s) 28
SmlI CTYRAG 2 cut(s) 424, 692
SmoI CTYRAG 2 cut(s) 424, 692
SnaBI TACGTA 1 cut(s) 115
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 6 cut(s) 122, 331, 652, 668, 697, 709
SsiI CCGC 1 cut(s) 186
SspMI CTAG 2 cut(s) 87, 594
StyD4I CCNGG 1 cut(s) 759
TaaI ACNGT 4 cut(s) 94, 309, 536, 731
TaiI ACGT 3 cut(s) 117, 450, 768
TaqI TCGA 2 cut(s) 105, 746
TasI AATT 6 cut(s) 122, 331, 652, 668, 697, 709
TatI WGTACW 1 cut(s) 733
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 450, 707
Tru9I TTAA 2 cut(s) 450, 707
TscAI CASTG 2 cut(s) 289, 541
TseI GCWGC 2 cut(s) 27, 30
TspDTI ATGAA 4 cut(s) 84, 301, 401, 702
TspGWI ACGGA 1 cut(s) 603
TspRI CASTG 2 cut(s) 289, 541
Van91I CCANNNNNTGG 1 cut(s) 213
XapI RAATTY 2 cut(s) 697, 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 2 cut(s) 87, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.