Rh2BG572600

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000687
Physical Location & Seq
Reverse (-)
78903868 .. 78904437
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG572600.1

Sequence Viewer

Length: 570 bp
ATGTGGCACTTCTTTAACATTTTCTCATGTCAAAGAGTTAGAAGCATAGAGTTCTCTGACATATTCTTGAAAAGCGAATGGTGTGAAGGCTTCAGTTCGAGTTTTCCCCTGCTCGAGAGTTTGATTTTGCATAAATGCAACTGGCAGTACTGGGAACACATAAAAATCTTTAGCCAGAACCTGAAACGTTTTGTATTTTCTGATTCAGAACCCATCAAGCCTTTCTTTTCTTTGAACTTTCCAAATTTATCGGAGGCTAGAATCGACCTCTTGTTTAGACCCGCAGACCCCCCAGGTCCCTTTCCATGGGAATATTTCTACCATCTGAAAAAGTGTCTTGAAAATTTTAATTGCTCTAGAAAAGTAATTCTATATGTTACGAGGGCGGAGCTATGTACTTTTCCAGAACGGATAAGAAACGGATTCACCCCACCATTGCCTAGTCTCAAGCATCTTGATGTAGAGATCGGTACTTCTACAACTGAAGTGACACATTCTGCCTTAATGGACTCCTTGAATTGGATGGCACCAGCGTCTCGAGTTTCGATCCATAAAACAACATTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

189

Amino Acids

22.27

Weight (kDa)

7.66

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 526
AciI CCGC 2 cut(s) 282, 386
AclI AACGTT 1 cut(s) 187
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 2 cut(s) 244, 343
AcuI CTGAAG 2 cut(s) 76, 504
AfaI GTAC 3 cut(s) 149, 397, 472
AfiI CCNNNNNNNGG 2 cut(s) 306, 519
AgsI TTSAA 4 cut(s) 70, 235, 341, 517
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 449, 540
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 2 cut(s) 113, 537
ApoI RAATTY 2 cut(s) 244, 343
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 418
AvaI CYCGRG 2 cut(s) 113, 537
AvaII GGWCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 526
BccI CCATC 3 cut(s) 221, 330, 517
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 449, 540
BfaI CTAG 3 cut(s) 258, 357, 441
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 296
BmeT110I CYCGRG 2 cut(s) 113, 537
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 298, 528
BmrFI CCNGG 1 cut(s) 294
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 292, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 519
Bse1I ACTGG 2 cut(s) 146, 155
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 292, 305
BseGI GGATG 1 cut(s) 528
BseLI CCNNNNNNNGG 2 cut(s) 306, 519
BseMI GCAATG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 146, 155
BshNI GGYRCC 1 cut(s) 526
BsiHKCI CYCGRG 2 cut(s) 113, 537
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 2 cut(s) 306, 519
BsmAI GTCTC 2 cut(s) 449, 540
BsmBI CGTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 282
BsoBI CYCGRG 2 cut(s) 113, 537
Bsp143I GATC 2 cut(s) 465, 546
Bsp19I CCATGG 1 cut(s) 305
BspACI CCGC 2 cut(s) 282, 386
BspLI GGNNCC 2 cut(s) 298, 528
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 2 cut(s) 146, 155
BssECI CCNNGG 2 cut(s) 292, 305
BssMI GATC 2 cut(s) 465, 546
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 567
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 528
BstKTI GATC 2 cut(s) 468, 549
BstMAI GTCTC 2 cut(s) 449, 540
BstMBI GATC 2 cut(s) 465, 546
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 528
CaiI CAGNNNCTG 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 296
CseI GACGC 1 cut(s) 522
Csp6I GTAC 3 cut(s) 148, 396, 471
CviAII CATG 2 cut(s) 27, 306
CviJI RGCY 5 cut(s) 90, 174, 220, 257, 391
CviKI_1 RGCY 5 cut(s) 90, 174, 220, 257, 391
CviQI GTAC 3 cut(s) 148, 396, 471
DdeI CTNAG 1 cut(s) 567
DpnI GATC 2 cut(s) 467, 548
DpnII GATC 2 cut(s) 465, 546
EciI GGCGGA 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 2 cut(s) 76, 504
Eco88I CYCGRG 2 cut(s) 113, 537
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
Esp3I CGTCTC 1 cut(s) 540
FaeI CATG 2 cut(s) 30, 309
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 1 cut(s) 282
FatI CATG 2 cut(s) 26, 305
FauI CCCGC 1 cut(s) 289
FokI GGATG 1 cut(s) 535
FspBI CTAG 3 cut(s) 258, 357, 441
HgaI GACGC 1 cut(s) 522
Hin1II CATG 2 cut(s) 30, 309
HinfI GANTC 4 cut(s) 203, 261, 423, 509
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 5 cut(s) 58, 202, 208, 253, 327
Hpy188III TCNNGA 7 cut(s) 67, 115, 338, 357, 404, 455, 537
HpyAV CCTTC 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 130, 138
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 2 cut(s) 30, 309
Kzo9I GATC 2 cut(s) 465, 546
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 9 cut(s) 122, 127, 136, 188, 194, 279, 306, 417, 543
LweI GCATC 1 cut(s) 460
MaeI CTAG 3 cut(s) 258, 357, 441
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 2 cut(s) 376, 487
MalI GATC 2 cut(s) 467, 548
MboI GATC 2 cut(s) 465, 546
MluCI AATT 5 cut(s) 244, 343, 349, 366, 517
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 3 cut(s) 247, 278, 375
MseI TTAA 3 cut(s) 15, 348, 503
MslI CAYNNNNRTG 1 cut(s) 456
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
NcoI CCATGG 1 cut(s) 305
NdeII GATC 2 cut(s) 465, 546
NlaIII CATG 2 cut(s) 30, 309
NlaIV GGNNCC 2 cut(s) 298, 528
NmuCI GTSAC 1 cut(s) 487
PaeR7I CTCGAG 2 cut(s) 113, 537
PfeI GAWTC 3 cut(s) 203, 261, 423
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PpuMI RGGWCCY 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 298, 528
PspPI GGNCC 1 cut(s) 296
PspPPI RGGWCCY 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 181
RsaI GTAC 3 cut(s) 149, 397, 472
RsaNI GTAC 3 cut(s) 148, 396, 471
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 3 cut(s) 15, 348, 503
Sau3AI GATC 2 cut(s) 465, 546
Sau96I GGNCC 1 cut(s) 296
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 294
SetI ASST 5 cut(s) 183, 190, 270, 298, 393
SfaNI GCATC 1 cut(s) 460
Sfr274I CTCGAG 2 cut(s) 113, 537
SinI GGWCC 1 cut(s) 296
SlaI CTCGAG 2 cut(s) 113, 537
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 3 cut(s) 113, 446, 537
SmoI CTYRAG 3 cut(s) 113, 446, 537
Sse9I AATT 5 cut(s) 244, 343, 349, 366, 517
SsiI CCGC 2 cut(s) 282, 386
SspI AATATT 1 cut(s) 314
SspMI CTAG 3 cut(s) 258, 357, 441
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 305
TaiI ACGT 1 cut(s) 190
TaqI TCGA 5 cut(s) 98, 114, 264, 538, 545
TasI AATT 5 cut(s) 244, 343, 349, 366, 517
TatI WGTACW 2 cut(s) 147, 395
TfiI GAWTC 3 cut(s) 203, 261, 423
Tru1I TTAA 3 cut(s) 15, 348, 503
Tru9I TTAA 3 cut(s) 15, 348, 503
TseFI GTSAC 1 cut(s) 487
Tsp45I GTSAC 1 cut(s) 487
TspGWI ACGGA 2 cut(s) 424, 435
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 2 cut(s) 244, 343
XbaI TCTAGA 1 cut(s) 356
XhoI CTCGAG 2 cut(s) 113, 537
XspI CTAG 3 cut(s) 258, 357, 441
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.