Rh2DG609800

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000687
Physical Location & Seq
Reverse (-)
84263264 .. 84263551
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG609800.1

Sequence Viewer

Length: 288 bp
ATGGACGCCGTACCTCACTTACCTGACCTTGTTATCCACCAAATCCTCCGATTCCTTCCTACAAAACTTGCTGTACGCATAAGCTTTCTTTCCAAGAATTGGATAGGTATATGGTCTTCGCTCCCCATACTAGATTTCCAGGAGGATGATGACGGCAGCAACTTTCCCATATTTGACAAACTTCAACATATAAAGTTCATCAACTTCTTAGAAAGGTGTTTGGAGCTTCGTGAAGACAACCCGGCCAATAGAAAAATTCCGACTTCACATGAGATTTGGCGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

95

Amino Acids

11.18

Weight (kDa)

6.03

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 43 4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 99
AciI CCGC 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 2 cut(s) 12, 75
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 2 cut(s) 84, 226
AluI AGCT 2 cut(s) 84, 226
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 242
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BbsI GAAGAC 2 cut(s) 108, 240
BbvI GCAGC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 140
BcnI CCSGG 1 cut(s) 242
BfaI CTAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 140, 242
BmrFI CCNGG 2 cut(s) 140, 242
BpiI GAAGAC 2 cut(s) 108, 240
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 168
BshFI GGCC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 99
BsnI GGCC 1 cut(s) 245
BspACI CCGC 1 cut(s) 280
BspANI GGCC 1 cut(s) 245
BssNI GRCGYC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 151
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 138, 240
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 2 cut(s) 108, 240
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 151
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 11, 74
CviAII CATG 1 cut(s) 269
CviJI RGCY 3 cut(s) 84, 226, 245
CviKI_1 RGCY 3 cut(s) 84, 226, 245
CviQI GTAC 2 cut(s) 11, 74
DdeI CTNAG 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 272
FaiI YATR 8 cut(s) 80, 110, 112, 128, 170, 189, 191, 270
FatI CATG 1 cut(s) 268
FauI CCCGC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 1 cut(s) 51
HpaII CCGG 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 50, 261
Hpy188III TCNNGA 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 208
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 272
LmnI GCTCC 2 cut(s) 126, 223
LpnPI CCDG 4 cut(s) 36, 125, 152, 255
Lsp1109I GCAGC 1 cut(s) 168
MaeI CTAG 1 cut(s) 131
MboII GAAGA 2 cut(s) 108, 245
MluCI AATT 2 cut(s) 97, 255
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 3 cut(s) 24, 56, 136
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 140, 242
MvaI CCWGG 1 cut(s) 140
NciI CCSGG 1 cut(s) 242
NlaIII CATG 1 cut(s) 272
PfeI GAWTC 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
RsaI GTAC 2 cut(s) 12, 75
RsaNI GTAC 2 cut(s) 11, 74
SatI GCNGC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 140, 242
SetI ASST 7 cut(s) 16, 25, 30, 86, 109, 218, 228
Sse9I AATT 2 cut(s) 97, 255
SsiI CCGC 1 cut(s) 280
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 138, 240
TasI AATT 2 cut(s) 97, 255
TfiI GAWTC 1 cut(s) 51
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 99
XapI RAATTY 1 cut(s) 255
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.