Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Reverse (-)

78381056 .. 78381715

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021797

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGCAAATCCTCGCTGGATCTCTGCTTTCCACCAAAAACACTGCCCGGACATGCATTTTTTCTAAGCAGTGGTTACGTGTATGGCCTTTGATTCCTGCATTGGACATTGATGAGGATGAGGATAAGAATAATGAGGTTGATGAGGATGAGCAGGCAGGCCTTGCGAAAAACGGGATTCGACATCAAAGGTTCATGAACTTCTTGAGCATGTGTTTGAGGCGATGTGAGAAATATAACAACACGTTAGACAAGTTTAGGCTTCGTATGAGATACTTTGGTGATTGGAACTATGATGATAATGGGATCATAAGCAGGTGTTTGAGTTATGCTGCTGAAAGAAACAGAAACGTTAAAGAGTTAGACATCTGCTTCATATATATACCAGATTTACCGGCATACACCCCGTACCGCTTACCACGAACAGTTCTCAGCAACAATGCAGGATCTTTAACCATTCTAAAGTTGGAGAATGTGGTGATACAGGGCAGCAATGACCCTACGAGCTTCCCATGTTTGACAACTATGTCCCTCAAACTAGTGGAATTCAGTAGCAACTTCGCATTCTTGCAGTTAATTTCTGGGTGCCCTTTCATGGCTTACTTGTCCCTCAAGCTATGTACTGGCTTGTCACAGACTCTTAAACTTTCAGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

220

Amino Acids

25.11

Weight (kDa)

6.59

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	115 - 216	5e-07	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	306
AasI	GACNNNNNNGTC	1 cut(s)	526
Acc36I	ACCTGC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	585
AciI	CCGC	1 cut(s)	412
AclI	AACGTT	1 cut(s)	351
AclWI	GGATC	3 cut(s)	28, 314, 454
AcsI	RAATTY	1 cut(s)	545
AfaI	GTAC	2 cut(s)	410, 622
AfiI	CCNNNNNNNGG	1 cut(s)	595
AflIII	ACRYGT	2 cut(s)	79, 243
AhlI	ACTAGT	1 cut(s)	538
AluBI	AGCT	2 cut(s)	507, 616
AluI	AGCT	2 cut(s)	507, 616
AlwI	GGATC	3 cut(s)	28, 314, 454
AoxI	GGCC	2 cut(s)	86, 160
ApeKI	GCWGC	2 cut(s)	332, 489
ApoI	RAATTY	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	293, 490
BaeGI	GKGCMC	1 cut(s)	590
BaeI	ACNNNNGTAYC	2 cut(s)	265, 298
BanI	GGYRCC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	319, 501
BcnI	CCSGG	1 cut(s)	49
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	2 cut(s)	333, 490
BlsI	GCNGC	2 cut(s)	334, 491
Bme1390I	CCNGG	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	1 cut(s)	49
BpuEI	CTTGAG	2 cut(s)	226, 596
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	499
BseGI	GGATG	2 cut(s)	124, 154
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	445
BseNI	ACTGG	1 cut(s)	628
BseSI	GKGCMC	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	319, 501
BshFI	GGCC	2 cut(s)	88, 162
BshNI	GGYRCC	1 cut(s)	585
BsiSI	CCGG	2 cut(s)	49, 395
BslFI	GGGAC	2 cut(s)	514, 592
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmFI	GGGAC	2 cut(s)	514, 592
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	88, 162
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	3 cut(s)	20, 306, 446
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	2 cut(s)	88, 162
BspCNI	CTCAG	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	587
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	28, 314, 454
BspT107I	GGYRCC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	394
BssMI	GATC	3 cut(s)	20, 306, 446
Bst4CI	ACNGT	1 cut(s)	427
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	156, 160
BstDEI	CTNAG	2 cut(s)	66, 431
BstF5I	GGATG	2 cut(s)	124, 154
BstKTI	GATC	3 cut(s)	23, 309, 449
BstMBI	GATC	3 cut(s)	20, 306, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNSI	RCATGY	2 cut(s)	57, 214
BstSCI	CCNGG	1 cut(s)	47
BstSLI	GKGCMC	1 cut(s)	590
BstV1I	GCAGC	2 cut(s)	319, 501
BstX2I	RGATCY	2 cut(s)	20, 446
BstYI	RGATCY	2 cut(s)	20, 446
BsuRI	GGCC	2 cut(s)	88, 162
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	124, 154
BtsI	GCAGTG	2 cut(s)	42, 77
BtsIMutI	CAGTG	2 cut(s)	42, 77
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	156, 160
CciI	TCATGA	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	409, 621
CviAII	CATG	5 cut(s)	54, 196, 211, 513, 595
CviJI	RGCY	7 cut(s)	88, 162, 262, 507, 599, 616, 627
CviKI_1	RGCY	7 cut(s)	88, 162, 262, 507, 599, 616, 627
CviQI	GTAC	2 cut(s)	409, 621
DdeI	CTNAG	2 cut(s)	66, 431
DpnI	GATC	3 cut(s)	22, 308, 448
DpnII	GATC	3 cut(s)	20, 306, 446
DrdI	GACNNNNNNGTC	1 cut(s)	526
DseDI	GACNNNNNNGTC	1 cut(s)	526
Eco147I	AGGCCT	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	545
EcoT22I	ATGCAT	1 cut(s)	59
FaeI	CATG	5 cut(s)	57, 199, 214, 516, 598
FaqI	GGGAC	2 cut(s)	514, 592
FatI	CATG	5 cut(s)	53, 195, 210, 512, 594
Fnu4HI	GCNGC	2 cut(s)	333, 490
FokI	GGATG	2 cut(s)	131, 161
Fsp4HI	GCNGC	2 cut(s)	333, 490
FspBI	CTAG	1 cut(s)	539
GluI	GCNGC	2 cut(s)	333, 490
HaeIII	GGCC	2 cut(s)	88, 162
HapII	CCGG	2 cut(s)	49, 395
Hin1II	CATG	5 cut(s)	57, 199, 214, 516, 598
HinfI	GANTC	4 cut(s)	94, 178, 637, 653
HpaII	CCGG	2 cut(s)	49, 395
HphI	GGTGA	2 cut(s)	293, 490
Hpy188I	TCNGA	1 cut(s)	652
Hpy188III	TCNNGA	2 cut(s)	196, 205
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	3 cut(s)	79, 245, 351
HpyCH4V	TGCA	4 cut(s)	57, 101, 443, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	66, 431
HpySE526I	ACGT	3 cut(s)	79, 245, 351
Hsp92II	CATG	5 cut(s)	57, 199, 214, 516, 598
Kzo9I	GATC	3 cut(s)	20, 306, 446
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	319, 501
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	3 cut(s)	79, 245, 351
MaeIII	GTNAC	2 cut(s)	75, 630
MalI	GATC	3 cut(s)	22, 308, 448
MboI	GATC	3 cut(s)	20, 306, 446
MflI	RGATCY	2 cut(s)	20, 446
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	2 cut(s)	545, 576
MlyI	GAGTC	2 cut(s)	631, 647
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	8 cut(s)	23, 109, 115, 130, 139, 213, 542, 620
Mph1103I	ATGCAT	1 cut(s)	59
MseI	TTAA	5 cut(s)	354, 452, 575, 642, 658
MspI	CCGG	2 cut(s)	49, 395
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	563
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	3 cut(s)	20, 306, 446
NlaIII	CATG	5 cut(s)	57, 199, 214, 516, 598
NlaIV	GGNNCC	1 cut(s)	587
NmuCI	GTSAC	1 cut(s)	630
NsiI	ATGCAT	1 cut(s)	59
NspI	RCATGY	2 cut(s)	57, 214
PagI	TCATGA	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	162
PctI	GAATGC	1 cut(s)	563
PfeI	GAWTC	2 cut(s)	94, 178
PkrI	GCNGC	2 cut(s)	334, 491
PleI	GAGTC	2 cut(s)	631, 647
PpsI	GAGTC	2 cut(s)	631, 647
Ppu21I	YACGTR	1 cut(s)	80
Psp1406I	AACGTT	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	20, 446
RsaI	GTAC	2 cut(s)	410, 622
RsaNI	GTAC	2 cut(s)	409, 621
SaqAI	TTAA	5 cut(s)	354, 452, 575, 642, 658
SatI	GCNGC	2 cut(s)	333, 490
Sau3AI	GATC	3 cut(s)	20, 306, 446
SchI	GAGTC	2 cut(s)	631, 647
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	590
SetI	ASST	8 cut(s)	82, 141, 194, 248, 320, 354, 509, 618
SmlI	CTYRAG	2 cut(s)	205, 611
SmoI	CTYRAG	2 cut(s)	205, 611
SpeI	ACTAGT	1 cut(s)	538
Sse9I	AATT	2 cut(s)	545, 576
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	539
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	3 cut(s)	82, 248, 354
TaqI	TCGA	1 cut(s)	181
TasI	AATT	2 cut(s)	545, 576
TatI	WGTACW	1 cut(s)	620
TfiI	GAWTC	2 cut(s)	94, 178
Tru1I	TTAA	5 cut(s)	354, 452, 575, 642, 658
Tru9I	TTAA	5 cut(s)	354, 452, 575, 642, 658
TscAI	CASTG	2 cut(s)	49, 77
TseFI	GTSAC	1 cut(s)	630
TseI	GCWGC	2 cut(s)	332, 489
Tsp45I	GTSAC	1 cut(s)	630
TspDTI	ATGAA	4 cut(s)	184, 212, 364, 583
TspRI	CASTG	2 cut(s)	49, 77
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	2 cut(s)	57, 214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XspI	CTAG	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.