Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Forward (+)

16347073 .. 16353956

Gene Structure 6884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG106100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTCGTTCAGGGTGTGGTTGTGGTCGGGGGAGGAGGCCATTGCTGGGGGAGGAAGATTTTAGGTCTAACATACTTTCTAGTTCAATCGTTGAAAAATTTCTGCTGTAACATCAAAATCAAAGTTGAAGCACCTAGTCTTGAAGTTTTCGGACCCATTGGTCAGAGTTTCAAGATCTTGCACCTGAGCAATGAGGAGGACTCCGACATTGCCTCTTGTCGAAAACTGAAGAATCTGGAGTTCGTTAGCTCAATATTTGTTTACGGATGGTTCGCGGGACTCGATTCCAGATTTCCACTGCTCGAGAGCGTAATTTTACAATATTGCGTGCCCTTGGAACATATCAATGTGGTTAGTCGAAGCCTGCAACGGTTTTCCTATTTTGATTATGGAGGGAATATGTTTCCTATACAATGGTTGATTGGAAACTTTGACTACTGCGAGAAGATGGGGTTGCATGCTATTGATGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

158

Amino Acids

17.85

Weight (kDa)

6.4

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	159
AccII	CGCG	1 cut(s)	275
AciI	CCGC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	5 cut(s)	86, 94, 128, 143, 172
AluBI	AGCT	1 cut(s)	249
AluI	AGCT	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	333
BccI	CCATC	2 cut(s)	261, 442
BfaI	CTAG	2 cut(s)	80, 135
BglII	AGATCT	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	154
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse3DI	GCAATG	3 cut(s)	40, 196, 207
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	3 cut(s)	40, 196, 207
BseMII	CTCAG	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	48, 209
BseSI	GKGCMC	1 cut(s)	333
BseYI	CCCAGC	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	154
BsrDI	GCAATG	3 cut(s)	40, 196, 207
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	329, 365, 459
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	461
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	272
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	3 cut(s)	329, 365, 459
Cfr13I	GGNCC	1 cut(s)	152
CviAII	CATG	1 cut(s)	458
CviJI	RGCY	3 cut(s)	39, 249, 363
CviKI_1	RGCY	3 cut(s)	39, 249, 363
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DrdI	GACNNNNNNGTC	1 cut(s)	159
DseDI	GACNNNNNNGTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	461
FaiI	YATR	6 cut(s)	73, 342, 390, 401, 410, 459
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	1 cut(s)	457
FauI	CCCGC	1 cut(s)	268
FokI	GGATG	1 cut(s)	279
FspBI	CTAG	2 cut(s)	80, 135
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	461
HinfI	GANTC	4 cut(s)	200, 232, 279, 284
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	152, 165, 205
Hpy188III	TCNNGA	5 cut(s)	140, 172, 236, 288, 304
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4V	TGCA	3 cut(s)	181, 367, 457
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	461
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	5 cut(s)	31, 197, 221, 301, 377
MaeI	CTAG	2 cut(s)	80, 135
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	67, 241, 457
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	2 cut(s)	97, 312
MlyI	GAGTC	2 cut(s)	194, 273
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	7 cut(s)	26, 29, 45, 187, 190, 223, 386
MroXI	GAANNNNTTC	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	275
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	461
NlaIV	GGNNCC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	461
PaeI	GCATGC	1 cut(s)	461
PaeR7I	CTCGAG	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	232, 284
PleI	GAGTC	2 cut(s)	194, 273
PpsI	GAGTC	2 cut(s)	194, 273
PspFI	CCCAGC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	2 cut(s)	194, 273
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	4 cut(s)	67, 136, 186, 251
Sfr274I	CTCGAG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	2 cut(s)	97, 312
SsiI	CCGC	1 cut(s)	275
SspI	AATATT	2 cut(s)	255, 323
SspMI	CTAG	2 cut(s)	80, 135
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	372
TaqI	TCGA	4 cut(s)	220, 282, 303, 358
TasI	AATT	2 cut(s)	97, 312
TfiI	GAWTC	2 cut(s)	232, 284
TscAI	CASTG	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	461
XhoI	CTCGAG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	2 cut(s)	80, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.