FvH4_3g23841

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000687
Physical Location & Seq
Forward (+)
16914147 .. 16915252
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23841.t1

Sequence Viewer

Length: 423 bp
ATGAATACAAGCTTTGCACATGTATACAAAGATACTGTGGTGATGTTGAACATGGTTGGTAGTCTTGACAAGAGCACAAGATGGGATACATATCATATTACCCTCAGGGATTTCCTTGCAAATTTTGACTGCTCAGGAAAATTATCCATCTATGCTTTTGGTTCTGAGGATATCCTCTTTTCAGAAGATACGAGGCAGACCTGTTTTGCACCATTGCCTAGTCTCAAGCATTTGGACATGAAGATAATAGAGCGGAAAAGTTCCGCAATGGCAGTGACAGATTTTTACGTGAGGGACTCGTTGAATTGGATGGCACCATCTCTGGAAATTCTATCTATAAACAAGAAATGGAGTAAAAATTTCAACAAAGAGATTAATTCCTGTTTGCGATACCATTTTCACCCTGTGACAGGTGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

141

Amino Acids

16.12

Weight (kDa)

7.7

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccBSI CCGCTC 1 cut(s) 253
AccI GTMKAC 1 cut(s) 24
AciI CCGC 2 cut(s) 253, 264
AcsI RAATTY 3 cut(s) 121, 327, 358
AdeI CACNNNGTG 1 cut(s) 406
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 3 cut(s) 49, 304, 364
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 227
ApoI RAATTY 3 cut(s) 121, 327, 358
AseI ATTAAT 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 52, 392
AxyI CCTNAGG 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 24, 57
BanI GGYRCC 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 77
BccI CCATC 4 cut(s) 75, 155, 304, 325
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 219
BfuI GTATCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 289
BsaBI GATNNNNATC 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse21I CCTNAGG 1 cut(s) 104
Bse3DI GCAATG 2 cut(s) 212, 273
Bse8I GATNNNNATC 1 cut(s) 90
BseGI GGATG 2 cut(s) 315, 422
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMI GCAATG 2 cut(s) 212, 273
BseMII CTCAG 3 cut(s) 118, 147, 156
BshNI GGYRCC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 77
BspACI CCGC 2 cut(s) 253, 264
BspCNI CTCAG 3 cut(s) 117, 146, 157
BspLI GGNNCC 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 313
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 212, 273
BssNAI GTATAC 1 cut(s) 25
Bst1107I GTATAC 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 289
BstDEI CTNAG 3 cut(s) 104, 133, 165
BstENI CCTNNNNNAGG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 315, 422
BstMAI GTCTC 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 23
BstZ17I GTATAC 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 104
BsuI GTATCC 1 cut(s) 79
BtsCI GGATG 2 cut(s) 315, 422
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
CviAII CATG 3 cut(s) 20, 52, 238
CviJI RGCY 1 cut(s) 12
CviKI_1 RGCY 1 cut(s) 12
DdeI CTNAG 3 cut(s) 104, 133, 165
DraIII CACNNNGTG 1 cut(s) 406
Eco32I GATATC 1 cut(s) 172
Eco81I CCTNAGG 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 408
EcoRV GATATC 1 cut(s) 172
FaeI CATG 3 cut(s) 23, 55, 241
FaiI YATR 8 cut(s) 21, 25, 53, 91, 96, 153, 239, 338
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 19, 51, 237
FblI GTMKAC 1 cut(s) 24
FokI GGATG 1 cut(s) 322
FspBI CTAG 1 cut(s) 219
Hin1II CATG 3 cut(s) 23, 55, 241
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 1 cut(s) 296
HphI GGTGA 2 cut(s) 52, 392
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 166, 184
Hpy188III TCNNGA 3 cut(s) 65, 135, 323
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 17, 119, 209
HpyF3I CTNAG 3 cut(s) 104, 133, 165
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 3 cut(s) 23, 55, 241
LpnPI CCDG 7 cut(s) 91, 120, 214, 308, 394, 396, 417
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 274, 406
MbiI CCGCTC 1 cut(s) 253
MboII GAAGA 2 cut(s) 197, 253
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 6 cut(s) 121, 140, 304, 327, 358, 376
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 5 cut(s) 113, 160, 185, 186, 285
MseI TTAA 1 cut(s) 375
NlaIII CATG 3 cut(s) 23, 55, 241
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 2 cut(s) 274, 406
NspI RCATGY 1 cut(s) 23
PciI ACATGT 1 cut(s) 19
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 1 cut(s) 289
PscI ACATGT 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 375
SchI GAGTC 1 cut(s) 290
SduI GDGCHC 1 cut(s) 77
SetI ASST 4 cut(s) 14, 203, 291, 415
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 6 cut(s) 121, 140, 304, 327, 358, 376
SsiI CCGC 2 cut(s) 253, 264
SspMI CTAG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 291
TasI AATT 6 cut(s) 121, 140, 304, 327, 358, 376
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 2 cut(s) 274, 406
Tsp45I GTSAC 2 cut(s) 274, 406
TspDTI ATGAA 2 cut(s) 17, 254
TspRI CASTG 1 cut(s) 279
VspI ATTAAT 1 cut(s) 375
XagI CCTNNNNNAGG 1 cut(s) 408
XapI RAATTY 3 cut(s) 121, 327, 358
XceI RCATGY 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.