Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Reverse (-)

74045624 .. 74046181

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021310

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCGCAAAAACTTCTACATTGCCTCTTGTCAAACCCTCAGAAGTCTTGAGTTCTCTCATACACACTTTGCAATTGGATGGTTCAAAGGCCTCGATTCAAGATTTCCTCTTCTTGAGAGGTTGGTTTTACATACATGCTTCAGCTACTCGGGGATTATCAACATCTTTAGCCAGCATCTGAAAAGCTTTGTGTTTCATGAATGCGGAAACATTTTGTCTAATTTTTCTTTGACTGCTCCAAATTTATCGGAGGCTACAATCACAATTGAAGAGAAAAGAGACTATGATCGCCTGAGAAATTTTCTTGGAAATTTTGATTGCTCTAAGAAAATACGTCTACATGCTAATGAGACTGAGGTATGTATCTTTCCGGAGGAAATGAGAAAGAAATACTCTCCACCATTACCTAGTCTCAAGCATCTTGAGGTAGAGATAGATACTTTTACAACAGTAGTAACTGATTCGGCCTTGATGGACTCCTTACGGTGGATGGCACCGTCTCTGGAGTTTCTATCCATAAACAGAATTCATTACATATATGATAGTAGAATTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

186

Amino Acids

21.61

Weight (kDa)

7.08

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	337
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	1 cut(s)	204
AcsI	RAATTY	4 cut(s)	241, 298, 310, 525
AcuI	CTGAAG	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	486
AgsI	TTSAA	3 cut(s)	85, 99, 269
AluBI	AGCT	2 cut(s)	144, 186
AluI	AGCT	2 cut(s)	144, 186
Alw26I	GTCTC	4 cut(s)	273, 344, 416, 504
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	148
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	2 cut(s)	88, 465
ApoI	RAATTY	4 cut(s)	241, 298, 310, 525
AspLEI	GCGC	1 cut(s)	6
AvaI	CYCGRG	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	493
BccI	CCATC	3 cut(s)	72, 466, 484
BcoDI	GTCTC	4 cut(s)	273, 344, 416, 504
BfaI	CTAG	1 cut(s)	408
BmeT110I	CYCGRG	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	495
BmsI	GCATC	2 cut(s)	184, 427
BpmI	CTGGAG	1 cut(s)	524
BpuEI	CTTGAG	4 cut(s)	68, 134, 398, 443
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse3DI	GCAATG	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	370
BseGI	GGATG	2 cut(s)	83, 495
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	3 cut(s)	52, 284, 345
BshFI	GGCC	2 cut(s)	90, 467
BshNI	GGYRCC	1 cut(s)	493
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	4 cut(s)	273, 344, 416, 504
BsmBI	CGTCTC	1 cut(s)	504
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	90, 467
BsoBI	CYCGRG	1 cut(s)	148
Bsp13I	TCCGGA	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	90, 467
BspCNI	CTCAG	3 cut(s)	51, 285, 346
BspEI	TCCGGA	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	18
BssMI	GATC	1 cut(s)	286
Bst4CI	ACNGT	3 cut(s)	451, 486, 498
Bst6I	CTCTTC	2 cut(s)	114, 264
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	4 cut(s)	38, 293, 324, 354
BstF5I	GGATG	2 cut(s)	83, 495
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	4 cut(s)	273, 344, 416, 504
BstMBI	GATC	1 cut(s)	286
BstNSI	RCATGY	2 cut(s)	138, 344
BsuRI	GGCC	2 cut(s)	90, 467
BtsCI	GGATG	2 cut(s)	83, 495
Cac8I	GCNNGC	1 cut(s)	173
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	6
CviAII	CATG	3 cut(s)	135, 197, 341
CviJI	RGCY	6 cut(s)	90, 144, 171, 186, 254, 467
CviKI_1	RGCY	6 cut(s)	90, 144, 171, 186, 254, 467
DdeI	CTNAG	4 cut(s)	38, 293, 324, 354
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	2 cut(s)	114, 264
EarI	CTCTTC	2 cut(s)	114, 264
Eco147I	AGGCCT	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	3 cut(s)	138, 200, 344
FatI	CATG	3 cut(s)	134, 196, 340
FblI	GTMKAC	1 cut(s)	337
FokI	GGATG	2 cut(s)	90, 502
FspBI	CTAG	1 cut(s)	408
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	90, 467
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	138, 200, 344
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	3 cut(s)	95, 461, 476
HpaII	CCGG	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	3 cut(s)	41, 180, 250
Hpy188III	TCNNGA	7 cut(s)	47, 99, 113, 197, 371, 422, 503
Hpy8I	GTNNAC	1 cut(s)	338
HpyCH4III	ACNGT	3 cut(s)	451, 486, 498
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	71
HpyF3I	CTNAG	4 cut(s)	38, 293, 324, 354
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	3 cut(s)	138, 200, 344
HspAI	GCGC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	4 cut(s)	185, 305, 384, 488
LweI	GCATC	2 cut(s)	184, 427
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	2 cut(s)	101, 281
MfeI	CAATTG	2 cut(s)	72, 264
MluCI	AATT	8 cut(s)	72, 220, 241, 264, 298, 310, 525, 549
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	9 cut(s)	34, 47, 101, 111, 117, 244, 349, 367, 418
MroI	TCCGGA	1 cut(s)	370
MseI	TTAA	1 cut(s)	556
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	1 cut(s)	371
MunI	CAATTG	2 cut(s)	72, 264
Mva1269I	GAATGC	1 cut(s)	206
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	138, 200, 344
NlaIV	GGNNCC	1 cut(s)	495
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	2 cut(s)	138, 344
PagI	TCATGA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	90
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	95, 461
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	556
Sau3AI	GATC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	470
SetI	ASST	7 cut(s)	122, 146, 188, 337, 360, 409, 429
SfaNI	GCATC	2 cut(s)	184, 427
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	4 cut(s)	47, 113, 413, 422
SmoI	CTYRAG	4 cut(s)	47, 113, 413, 422
Sse9I	AATT	8 cut(s)	72, 220, 241, 264, 298, 310, 525, 549
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	451, 486, 498
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	93
TasI	AATT	8 cut(s)	72, 220, 241, 264, 298, 310, 525, 549
TfiI	GAWTC	2 cut(s)	95, 461
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	185, 213, 518
XapI	RAATTY	4 cut(s)	241, 298, 310, 525
XceI	RCATGY	2 cut(s)	138, 344
XmiI	GTMKAC	1 cut(s)	337
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.