Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000687

Physical Location & Seq

Genomic Coordinates Forward (+)

29053220 .. 29054624

Gene Structure 1405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGATTGCCAGGACACACTTCAAATGGCCGATACAGTTGAGTTACCAGATATTGCGATCTGCCAAATCCTCCATTCGCTTTCTACTAAGTTTGCAGTCCGGGCCAGCATTCTTTCAAAGCAATGGGAACGTGTCTGGCCCTTGGTCCCAGTATTAGATTTTGACGAGGACGAGAATGCACCAAATGGTCACAATGCCAGCCCTCGTCAACACAGAAAGTTCCTGGAGTTTGTGACAATGTGTTTGAAGCGTCGTGAAGAAGATAAGTTGTTACATAAATTCTGGCTTCGCATGGCGTACTGTTATTACTGTAGAGACTGTGCAGAGCTCATGGATAAGTGTTTGAGTTTTGCTCTTGACAGAAATGTTATAGAGTTGCATATTGCTAAGTCAGACTACTTCTTACCTCATAAAGTTCTGAATGCTGAATGTTTAACTGTTTTAAGTATGGATTCTATTCAATTTAGAGGTGATGAAACTGTAACTCTTCCTTCTCTGAAATCTTTGTCTCTAATCTGTATAAGTTTTGGTGATTTGGGATTCCATCACCTTGTGGCAGGGTGTCCTTCCCTTGAGAATTTGTCAGTAGTTAAGTGCACAGGCTTTGAGAAAAGAGTTATAGTTAAAAGTTCCACCCTTAAATCCTTGGAAGTTTTCAACTCAGGTGTTGAACTTCAAGTTGAAGCTTTGAATCTAGAAACGTTTAGATTTGGCCAAAATGGTCATGCTTCCAACTATCGGAGGTTGTTATGCAACATTCAATTCTCTTCTTGTGGAGCACTTAGAAATCTAGCGTTTTTTCAGGCATGGTTTGTAGGTGCATGGTTTGACAACTTGAGTTCAAAATTTCCAGTTCTTGAAAGTTTGATCTTATATAAATGTGGCATCGACAGGGGAGATCTCAAAGTGTTTAGTAAGAACCTGAAACATTTTGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_2

Protein Analysis

314

Amino Acids

35.78

Weight (kDa)

6.78

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	92 - 292	6.7e-10	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	121 - 264	1.4e-13	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04890 FvH4_1g21691 FvH4_3g23841 FvH4_4g07130 FvH4_4g08290 FvH4_4g28370 FvH4_4g28371 FvH4_4g32271 FvH4_5g08910 FvH4_5g10530 FvH4_6g38430 FvH4_6g39830 FvH4_6g44771
malus_domestica	MD09G1093500.v1.1 MD09G1093600.v1.1 MD10G1278600.v1.1
prunus_persica	Prupe.3G231800_v2.0.a1 Prupe.8G124600_v2.0.a1 Prupe.8G124800_v2.0.a1
pyrus_communis	pycom05g07350 pycom09g01850 pycom09g01880 pycom10g23240
rosa_chinensis	RchiOBHm_Chr2g0161931 RchiOBHm_Chr2g0161951
rosa_laevigata	RLG00000006121 RLG00000021308 RLG00000021310 RLG00000021796 RLG00000021797
rosa_multiflora	Rmu_sc0002416.1_g000003 Rmu_sc0002952.1_g000004 Rmu_sc0006317.1_g000002 Rmu_sc0007154.1_g000009 Rmu_sc0007205.1_g000010 Rmu_sc0007589.1_g000001 Rmu_sc0008565.1_g000002 Rmu_sc0018381.1_g000002 Rmu_sc0018381.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082790 Rroxscaffold_3G00268660 Rroxscaffold_5G00377450 Rroxscaffold_5G00381990
rosa_rugosa	Rorug01G0298600 Rorug02G0493300 Rorug02G0493400 Rorug02G0507800 Rorug02G0521600 Rorug02G0521600 Rorug02G0534400 Rorug04G0292900 Rorug04G0293000 Rorug04G0330700 Rorug06G0471000
rosa_samantha	Rh2AG559400 Rh2BG572600 Rh2BG572800 Rh2BG586900 Rh2BG599700 Rh2DG582400 Rh2DG582600 Rh2DG596200 Rh2DG609800 Rh4AG114100 Rh4AG382300 Rh4BG106300 Rh4DG106100 Rh6BG070300 Rh7AG071400 Rh7AG071500
rosa_wichuraiana	Rw2G046290 Rw4G007690 Rw4G030330 Rw4G032990 Rw7G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	701
AcoI	YGGCCR	2 cut(s)	27, 712
AcsI	RAATTY	3 cut(s)	278, 577, 845
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	738
AflIII	ACRYGT	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	9, 222
AluBI	AGCT	2 cut(s)	328, 686
AluI	AGCT	2 cut(s)	328, 686
Alw21I	GWGCWC	3 cut(s)	330, 599, 781
Alw26I	GTCTC	2 cut(s)	309, 513
Alw44I	GTGCAC	1 cut(s)	595
AoxI	GGCC	4 cut(s)	27, 102, 137, 712
ApaLI	GTGCAC	1 cut(s)	595
ApoI	RAATTY	3 cut(s)	278, 577, 845
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspS9I	GGNCC	3 cut(s)	102, 138, 145
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	482, 539, 542
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	3 cut(s)	330, 599, 781
BccI	CCATC	1 cut(s)	552
BciT130I	CCWGG	2 cut(s)	11, 224
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	309, 513
BfaI	CTAG	2 cut(s)	695, 791
BfmI	CTRYAG	1 cut(s)	310
BglII	AGATCT	1 cut(s)	898
Bme1390I	CCNGG	3 cut(s)	11, 101, 224
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	102, 138, 145
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	3 cut(s)	11, 101, 224
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	894
BmuI	ACTGGG	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	593, 856
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	141, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	738
Bse1I	ACTGG	2 cut(s)	149, 851
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	11, 224
BseDI	CCNNGG	2 cut(s)	141, 645
BseLI	CCNNNNNNNGG	1 cut(s)	738
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	2 cut(s)	149, 851
BseSI	GKGCMC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	29, 104, 139, 714
BsiHKAI	GWGCWC	3 cut(s)	330, 599, 781
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	738
BsmAI	GTCTC	2 cut(s)	309, 513
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	3 cut(s)	108, 181, 427
BsnI	GGCC	4 cut(s)	29, 104, 139, 714
Bsp1286I	GDGCHC	3 cut(s)	330, 599, 781
Bsp143I	GATC	3 cut(s)	57, 867, 898
BspANI	GGCC	4 cut(s)	29, 104, 139, 714
BspCNI	CTCAG	1 cut(s)	674
BspLI	GGNNCC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	149, 851
BssECI	CCNNGG	2 cut(s)	141, 645
BssMI	GATC	3 cut(s)	57, 867, 898
BssT1I	CCWWGG	2 cut(s)	141, 645
Bst2UI	CCWGG	2 cut(s)	11, 224
Bst4CI	ACNGT	6 cut(s)	37, 302, 311, 320, 439, 481
Bst6I	CTCTTC	2 cut(s)	492, 772
BstC8I	GCNNGC	2 cut(s)	106, 199
BstDEI	CTNAG	4 cut(s)	87, 387, 661, 782
BstKTI	GATC	3 cut(s)	60, 870, 901
BstMAI	GTCTC	2 cut(s)	309, 513
BstMBI	GATC	3 cut(s)	57, 867, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	2 cut(s)	11, 224
BstSCI	CCNGG	3 cut(s)	9, 99, 222
BstSFI	CTRYAG	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	4 cut(s)	29, 104, 139, 714
Cac8I	GCNNGC	2 cut(s)	106, 199
Cfr13I	GGNCC	3 cut(s)	102, 138, 145
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	5 cut(s)	292, 331, 725, 807, 822
CviJI	RGCY	9 cut(s)	29, 104, 139, 201, 286, 328, 603, 686, 714
CviKI_1	RGCY	9 cut(s)	29, 104, 139, 201, 286, 328, 603, 686, 714
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	4 cut(s)	87, 387, 661, 782
DpnI	GATC	3 cut(s)	59, 869, 900
DpnII	GATC	3 cut(s)	57, 867, 898
DraIII	CACNNNGTG	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	27, 712
Eam1104I	CTCTTC	2 cut(s)	492, 772
EarI	CTCTTC	2 cut(s)	492, 772
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	141, 645
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	9, 222
EcoT14I	CCWWGG	2 cut(s)	141, 645
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	2 cut(s)	141, 645
FaeI	CATG	5 cut(s)	295, 334, 728, 810, 825
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	5 cut(s)	291, 330, 724, 806, 821
FriOI	GRGCYC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	695, 791
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	4 cut(s)	29, 104, 139, 714
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	5 cut(s)	295, 334, 728, 810, 825
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	3 cut(s)	452, 540, 691
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	3 cut(s)	482, 539, 542
Hpy166II	GTNNAC	2 cut(s)	209, 597
Hpy188I	TCNGA	4 cut(s)	394, 420, 498, 741
Hpy188III	TCNNGA	4 cut(s)	254, 356, 695, 857
Hpy8I	GTNNAC	2 cut(s)	209, 597
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	2 cut(s)	501, 576
HpyCH4III	ACNGT	6 cut(s)	37, 302, 311, 320, 439, 481
HpyCH4IV	ACGT	2 cut(s)	130, 701
HpyCH4V	TGCA	7 cut(s)	95, 179, 323, 379, 597, 753, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	4 cut(s)	87, 387, 661, 782
HpySE526I	ACGT	2 cut(s)	130, 701
Hsp92II	CATG	5 cut(s)	295, 334, 728, 810, 825
Kzo9I	GATC	3 cut(s)	57, 867, 898
LmnI	GCTCC	1 cut(s)	776
LweI	GCATC	1 cut(s)	894
MaeI	CTAG	2 cut(s)	695, 791
MaeII	ACGT	2 cut(s)	130, 701
MaeIII	GTNAC	5 cut(s)	42, 188, 232, 270, 481
MalI	GATC	3 cut(s)	59, 869, 900
MboI	GATC	3 cut(s)	57, 867, 898
MboII	GAAGA	4 cut(s)	269, 272, 479, 759
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	3 cut(s)	330, 599, 781
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	5 cut(s)	278, 461, 577, 761, 845
MluNI	TGGCCA	1 cut(s)	714
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	6 cut(s)	80, 160, 213, 417, 461, 735
Mox20I	TGGCCA	1 cut(s)	714
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	5 cut(s)	434, 443, 591, 624, 639
Msp20I	TGGCCA	1 cut(s)	714
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	3 cut(s)	11, 101, 224
Mva1269I	GAATGC	3 cut(s)	108, 181, 427
MvaI	CCWGG	2 cut(s)	11, 224
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	3 cut(s)	57, 867, 898
NlaIII	CATG	5 cut(s)	295, 334, 728, 810, 825
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	2 cut(s)	188, 232
PctI	GAATGC	3 cut(s)	108, 181, 427
PfeI	GAWTC	3 cut(s)	452, 540, 691
PfoI	TCCNGGA	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	701
Psp6I	CCWGG	2 cut(s)	9, 222
PspGI	CCWGG	2 cut(s)	9, 222
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	102, 138, 145
PsuI	RGATCY	1 cut(s)	898
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	5 cut(s)	434, 443, 591, 624, 639
Sau3AI	GATC	3 cut(s)	57, 867, 898
Sau96I	GGNCC	3 cut(s)	102, 138, 145
ScrFI	CCNGG	3 cut(s)	11, 101, 224
SduI	GDGCHC	3 cut(s)	330, 599, 781
SfaNI	GCATC	1 cut(s)	894
SfcI	CTRYAG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	2 cut(s)	572, 835
SmoI	CTYRAG	2 cut(s)	572, 835
Sse9I	AATT	5 cut(s)	278, 461, 577, 761, 845
SspMI	CTAG	2 cut(s)	695, 791
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	9, 99, 222
StyI	CCWWGG	2 cut(s)	141, 645
TaaI	ACNGT	6 cut(s)	37, 302, 311, 320, 439, 481
TaiI	ACGT	2 cut(s)	133, 704
TaqI	TCGA	1 cut(s)	888
TasI	AATT	5 cut(s)	278, 461, 577, 761, 845
TfiI	GAWTC	3 cut(s)	452, 540, 691
Tru1I	TTAA	5 cut(s)	434, 443, 591, 624, 639
Tru9I	TTAA	5 cut(s)	434, 443, 591, 624, 639
TseFI	GTSAC	2 cut(s)	188, 232
Tsp45I	GTSAC	2 cut(s)	188, 232
TspDTI	ATGAA	1 cut(s)	489
VneI	GTGCAC	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	3 cut(s)	278, 577, 845
XbaI	TCTAGA	1 cut(s)	694
XspI	CTAG	2 cut(s)	695, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.