Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8439157.1

Orthogroup ID

OG0011558

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1552

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8439157.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 592 bp

gggccacagcttgcataagaagtgcttgcgtcactatacaaattatcatcctacgaagaatataaggacaagggatacgacttggaagaaggtgtggcatgccctgcaaaactacttggtcaataataatggagatgatgaagagactggtgctagtgataaggatgatgataatgatccttggtttagagaagagaatgttatgccacagcagacaaatctgcacgactgcggtttatatgtgatgtctgttgctagagtaatctgtcactggtactacgacgaggaggaggagcagcagcagcagcagcagaattgctgcttcttgggggacaaccggtttcccaatattatgaagcatcttgataactctatagaatacgcaatgcgccctcaattgttgaggttgattcaacgcctaaaacgctgcgacggcggtgcgaatcaggccggaggcatcccagacagcttctgggcagcgatcgaggtcggaggagggcgacggcggtgcgaatcaggccggaggcatcccagacagcttctgggcagcgatcgaggtcggaggaggtcgaggttgcaggtttctgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 WRKY

Protein Analysis

196

Amino Acids

22.94

Weight (kDa)

8.49

Isoelectric Point (pI)

74.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g37251 FvH4_6g48790
malus_domestica	MD00G1127100.v1.1
prunus_persica	Prupe.1G350400_v2.0.a1 Prupe.1G350400_v2.0.a1
pyrus_communis	pycom16g00110
rosa_chinensis	RchiOBHm_Chr4g0447061
rosa_laevigata	RLG00000005608 RLG00000021798
rosa_multiflora	Rmu_co8291115.1_g000001 Rmu_co8439157.1_g000001 Rmu_sc0014071.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082780 Rroxscaffold_5G00387380
rosa_rugosa	Rorug02G0534400
rosa_samantha	Rh2AG605300 Rh4BG448000 Rh4CG465100 Rh4DG446500
rosa_wichuraiana	Rw4G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	569
AciI	CCGC	3 cut(s)	232, 436, 506
AclWI	GGATC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	276
AgeI	ACCGGT	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	414
AluBI	AGCT	3 cut(s)	10, 469, 539
AluI	AGCT	3 cut(s)	10, 469, 539
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	171
AlwNI	CAGNNNCTG	2 cut(s)	472, 542
AoxI	GGCC	3 cut(s)	2, 448, 518
ApeKI	GCWGC	9 cut(s)	296, 299, 302, 305, 308, 319, 427, 477, 547
AsiGI	ACCGGT	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	2
BbvI	GCAGC	9 cut(s)	306, 308, 311, 314, 317, 320, 414, 489, 559
BceAI	ACGGC	2 cut(s)	449, 519
BcgI	CGANNNNNNTGC	4 cut(s)	420, 454, 490, 524
BciVI	GTATCC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	2 cut(s)	154, 256
BfmI	CTRYAG	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	68
BisI	GCNGC	9 cut(s)	297, 300, 303, 306, 309, 320, 428, 478, 548
BlsI	GCNGC	9 cut(s)	298, 301, 304, 307, 310, 321, 429, 479, 549
BmgT120I	GGNCC	1 cut(s)	2
BmsI	GCATC	3 cut(s)	368, 466, 536
BsaBI	GATNNNNATC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	337
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	152, 276
Bse3DI	GCAATG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	4 cut(s)	47, 170, 457, 527
BseJI	GATNNNNATC	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	391
BseNI	ACTGG	2 cut(s)	152, 276
BseRI	GAGGAG	5 cut(s)	300, 303, 306, 508, 578
BseXI	GCAGC	9 cut(s)	306, 308, 311, 314, 317, 320, 414, 489, 559
BsgI	GTGCAG	1 cut(s)	207
Bsh1285I	CGRYCG	2 cut(s)	484, 554
BshFI	GGCC	3 cut(s)	4, 450, 520
BshTI	ACCGGT	1 cut(s)	337
BsiEI	CGRYCG	2 cut(s)	484, 554
BsiSI	CCGG	3 cut(s)	338, 451, 521
BslFI	GGGAC	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	3 cut(s)	4, 450, 520
Bsp143I	GATC	3 cut(s)	176, 481, 551
BspACI	CCGC	3 cut(s)	232, 436, 506
BspANI	GGCC	3 cut(s)	4, 450, 520
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	152, 276
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	176, 481, 551
BssT1I	CCWWGG	1 cut(s)	180
Bst6I	CTCTTC	2 cut(s)	136, 187
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	12, 27, 100
BstF5I	GGATG	4 cut(s)	47, 170, 457, 527
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	3 cut(s)	179, 484, 554
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	3 cut(s)	176, 481, 551
BstMCI	CGRYCG	2 cut(s)	484, 554
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 302, 305, 308, 424, 433, 447, 517
BstNSI	RCATGY	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	9 cut(s)	306, 308, 311, 314, 317, 320, 414, 489, 559
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	3 cut(s)	4, 450, 520
BtsCI	GGATG	4 cut(s)	47, 170, 457, 527
BtsIMutI	CAGTG	1 cut(s)	269
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	3 cut(s)	12, 27, 100
CaiI	CAGNNNCTG	2 cut(s)	472, 542
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	2
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	275
CspAI	ACCGGT	1 cut(s)	337
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	6 cut(s)	4, 10, 450, 469, 520, 539
CviKI_1	RGCY	6 cut(s)	4, 10, 450, 469, 520, 539
CviQI	GTAC	1 cut(s)	275
DpnI	GATC	3 cut(s)	178, 483, 553
DpnII	GATC	3 cut(s)	176, 481, 551
Eam1104I	CTCTTC	2 cut(s)	136, 187
EarI	CTCTTC	2 cut(s)	136, 187
Eco130I	CCWWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	102
FaiI	YATR	9 cut(s)	16, 37, 63, 100, 204, 239, 241, 354, 375
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	9 cut(s)	297, 300, 303, 306, 309, 320, 428, 478, 548
FokI	GGATG	4 cut(s)	34, 177, 444, 514
Fsp4HI	GCNGC	9 cut(s)	297, 300, 303, 306, 309, 320, 428, 478, 548
FspBI	CTAG	2 cut(s)	154, 256
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	9 cut(s)	297, 300, 303, 306, 309, 320, 428, 478, 548
HaeIII	GGCC	3 cut(s)	4, 450, 520
HapII	CCGG	3 cut(s)	338, 451, 521
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	3 cut(s)	410, 443, 513
HpaII	CCGG	3 cut(s)	338, 451, 521
Hpy188I	TCNGA	2 cut(s)	492, 562
Hpy188III	TCNNGA	1 cut(s)	363
Hpy99I	CGWCG	3 cut(s)	285, 435, 505
HpyAV	CCTTC	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	14, 107, 224, 578
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 302, 305, 308, 424, 433, 447, 517
Hsp92II	CATG	1 cut(s)	102
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	3 cut(s)	176, 481, 551
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	9 cut(s)	306, 308, 311, 314, 317, 320, 414, 489, 559
LweI	GCATC	3 cut(s)	368, 466, 536
MaeI	CTAG	2 cut(s)	154, 256
MaeIII	GTNAC	2 cut(s)	30, 267
MalI	GATC	3 cut(s)	178, 483, 553
MboI	GATC	3 cut(s)	176, 481, 551
MboII	GAAGA	4 cut(s)	68, 98, 153, 204
MfeI	CAATTG	1 cut(s)	396
MluCI	AATT	3 cut(s)	41, 314, 396
MmeI	TCCRAC	2 cut(s)	470, 540
MspI	CCGG	3 cut(s)	338, 451, 521
MunI	CAATTG	1 cut(s)	396
MwoI	GCNNNNNNNGC	8 cut(s)	104, 302, 305, 308, 424, 433, 447, 517
NdeII	GATC	3 cut(s)	176, 481, 551
NlaIII	CATG	1 cut(s)	102
NmuCI	GTSAC	2 cut(s)	30, 267
NspI	RCATGY	1 cut(s)	102
PaeI	GCATGC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	410, 443, 513
PinAI	ACCGGT	1 cut(s)	337
PkrI	GCNGC	9 cut(s)	298, 301, 304, 307, 310, 321, 429, 479, 549
Ple19I	CGATCG	2 cut(s)	484, 554
PspPI	GGNCC	1 cut(s)	2
PstNI	CAGNNNCTG	2 cut(s)	472, 542
PvuI	CGATCG	2 cut(s)	484, 554
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SatI	GCNGC	9 cut(s)	297, 300, 303, 306, 309, 320, 428, 478, 548
Sau3AI	GATC	3 cut(s)	176, 481, 551
Sau96I	GGNCC	1 cut(s)	2
SfaNI	GCATC	3 cut(s)	368, 466, 536
SfcI	CTRYAG	1 cut(s)	373
SphI	GCATGC	1 cut(s)	102
Sse9I	AATT	3 cut(s)	41, 314, 396
SsiI	CCGC	3 cut(s)	232, 436, 506
SspI	AATATT	1 cut(s)	350
SspMI	CTAG	2 cut(s)	154, 256
StyI	CCWWGG	1 cut(s)	180
TaqI	TCGA	3 cut(s)	484, 554, 570
TasI	AATT	3 cut(s)	41, 314, 396
TfiI	GAWTC	3 cut(s)	410, 443, 513
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	30, 267
TseI	GCWGC	9 cut(s)	296, 299, 302, 305, 308, 319, 427, 477, 547
Tsp45I	GTSAC	2 cut(s)	30, 267
TspDTI	ATGAA	2 cut(s)	154, 369
TspRI	CASTG	1 cut(s)	276
XceI	RCATGY	1 cut(s)	102
XcmI	CCANNNNNNNNNTGG	2 cut(s)	469, 539
XspI	CTAG	2 cut(s)	154, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.