Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011558

Physical Location & Seq

Genomic Coordinates Reverse (-)

263669 .. 264999

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAATCCGAAGGTCCTTACTTACAAAAGTGTTGTGCTGAGAATGAGCGACTTGGCACTGCTTAGAGGCCCACATTACTTGAACGATTGCATAATTGAATTCTATTTCAGTTATCTTTCTTCCCTTTGTGATGATGACATCCTTCTGGTTTCACCTACAGTCTCATTTTGGCTGGCAAATTCTCAGAATTCGGAGGCTAATTTTAGAGACTTCAAGGAGTCTAATCAACTTGGTGAAAAGCAAGTTGTGATATTCACGGTGAATGATAATCAAGACATGAGCCAAAATGACGGCGGAAACCATTGGAGTTTGCTGGTGTATTACAGAAAATCCAATGCATTTGTGCATTACGACAGCTTGGGGGGTTTGAATAGCTTGGTTGCCAGGAAGTTTTACGGAGCAGTTAAGAAATCTGTGGCAGCTGCAGCAACACAAACACCAACGTTTGGGACTAGTAGTTTGGTTGCCACCACTAGGTCTATTATCGGCAACTACTCTAAGCACTTGCGAATTAGAGATCATCATCATAAGAAGAAGCGGGAGAAGAATAATGTATCGGGGGCTTTTGTTATGATGGGGCGCACCTTCTCTAACAAGTTTCATCAATTTAGAAATTATCACAAGAAGAAGAATATACTGGGGGGTTTTGTTAGGGGCCACAGCTTGCCTAAGAAGTGCTTGCGTAACTATACAAATTATCATCCTACGAAGAATATAAGGACAAGGGATACGACTTGGAAGAAGGTGTTGCATGCGCTGCAAAACTACTTGGTCAATAATAATGGAGATGATGAAGAGACTGAAGGTACTAGTGATAAGGATGATGATAATGATCCTTGGTTTAGAGAAGAGAATGTTATGCCTCAGCAGACAAATCTGTACGACTGCGGTTTATATGTGATGTCTGTTGCTAGAGTAATCTGTCACTGGTACTACGACGAGGAGGGACAGCAGCAGCAGCAGCAGAATTGCTGCTTCTTGGGGGACGACCGGTTTCCCAATATTAAGAAGCATCTTGATAACTCTATAGAATACGCAATGCGCCCTCAATTGATGAGGTTGATTCAACGCCTAAAACGTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 WRKY

Protein Analysis

363

Amino Acids

42.08

Weight (kDa)

9.11

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g37251 FvH4_6g48790
malus_domestica	MD00G1127100.v1.1
prunus_persica	Prupe.1G350400_v2.0.a1 Prupe.1G350400_v2.0.a1
pyrus_communis	pycom16g00110
rosa_chinensis	RchiOBHm_Chr4g0447061
rosa_laevigata	RLG00000005608 RLG00000021798
rosa_multiflora	Rmu_co8291115.1_g000001 Rmu_co8439157.1_g000001 Rmu_sc0014071.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082780 Rroxscaffold_5G00387380
rosa_rugosa	Rorug02G0534400
rosa_samantha	Rh2AG605300 Rh4BG448000 Rh4CG465100 Rh4DG446500
rosa_wichuraiana	Rw4G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	446
AciI	CCGC	3 cut(s)	294, 538, 888
AclI	AACGTT	1 cut(s)	443
AclWI	GGATC	1 cut(s)	827
AcsI	RAATTY	3 cut(s)	98, 178, 187
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	3 cut(s)	808, 881, 932
AfiI	CCNNNNNNNGG	2 cut(s)	446, 474
AgeI	ACCGGT	1 cut(s)	990
AgsI	TTSAA	5 cut(s)	82, 98, 214, 370, 1067
AhlI	ACTAGT	2 cut(s)	452, 809
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	4 cut(s)	357, 375, 422, 663
AluI	AGCT	4 cut(s)	357, 375, 422, 663
Alw26I	GTCTC	3 cut(s)	166, 201, 791
AlwI	GGATC	1 cut(s)	827
AoxI	GGCC	2 cut(s)	67, 655
ApeKI	GCWGC	9 cut(s)	419, 422, 425, 757, 952, 955, 958, 961, 972
ApoI	RAATTY	3 cut(s)	98, 178, 187
ArsI	GACNNNNNNTTYG	2 cut(s)	442, 474
AsiGI	ACCGGT	1 cut(s)	990
AspLEI	GCGC	3 cut(s)	582, 757, 1044
AspS9I	GGNCC	3 cut(s)	13, 68, 655
AsuHPI	GGTGA	3 cut(s)	144, 245, 271
AvaII	GGWCC	1 cut(s)	13
BbvCI	CCTCAGC	1 cut(s)	864
BbvI	GCAGC	9 cut(s)	409, 431, 437, 744, 959, 964, 967, 970, 973
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	385
BciVI	GTATCC	1 cut(s)	721
BcoDI	GTCTC	3 cut(s)	166, 201, 791
BcuI	ACTAGT	2 cut(s)	452, 809
BfaI	CTAG	4 cut(s)	453, 474, 810, 912
BfmI	CTRYAG	3 cut(s)	156, 423, 1026
BfuI	GTATCC	1 cut(s)	721
BisI	GCNGC	9 cut(s)	420, 423, 426, 758, 953, 956, 959, 962, 973
BlsI	GCNGC	9 cut(s)	421, 424, 427, 759, 954, 957, 960, 963, 974
Bme1390I	CCNGG	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	13, 68, 655
BmiI	GGNNCC	1 cut(s)	656
BmrFI	CCNGG	1 cut(s)	385
BmrI	ACTGGG	1 cut(s)	647
BmsI	GCATC	1 cut(s)	1021
BmuI	ACTGGG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	864
BsaBI	GATNNNNATC	2 cut(s)	522, 831
BsaJI	CCNNGG	1 cut(s)	836
BsaWI	WCCGGW	1 cut(s)	990
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 474
Bse118I	RCCGGY	1 cut(s)	990
Bse1I	ACTGG	2 cut(s)	642, 932
Bse3DI	GCAATG	1 cut(s)	1044
Bse8I	GATNNNNATC	2 cut(s)	522, 831
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	836
BseGI	GGATG	3 cut(s)	138, 700, 826
BseJI	GATNNNNATC	2 cut(s)	522, 831
BseLI	CCNNNNNNNGG	2 cut(s)	446, 474
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	3 cut(s)	29, 197, 878
BseNI	ACTGG	2 cut(s)	642, 932
BseRI	GAGGAG	1 cut(s)	956
BseXI	GCAGC	9 cut(s)	409, 431, 437, 744, 959, 964, 967, 970, 973
Bsh1285I	CGRYCG	1 cut(s)	991
BshFI	GGCC	2 cut(s)	69, 657
BshTI	ACCGGT	1 cut(s)	990
BsiEI	CGRYCG	1 cut(s)	991
BsiSI	CCGG	1 cut(s)	991
BslFI	GGGAC	3 cut(s)	463, 960, 998
BslI	CCNNNNNNNGG	2 cut(s)	446, 474
BsmAI	GTCTC	3 cut(s)	166, 201, 791
BsmFI	GGGAC	3 cut(s)	463, 960, 998
BsnI	GGCC	2 cut(s)	69, 657
Bsp143I	GATC	2 cut(s)	517, 832
BspACI	CCGC	3 cut(s)	294, 538, 888
BspANI	GGCC	2 cut(s)	69, 657
BspCNI	CTCAG	3 cut(s)	30, 196, 877
BspLI	GGNNCC	1 cut(s)	656
BspMAI	CTGCAG	1 cut(s)	427
BspPI	GGATC	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	1044
BsrFI	RCCGGY	1 cut(s)	990
BsrI	ACTGG	2 cut(s)	642, 932
BssAI	RCCGGY	1 cut(s)	990
BssECI	CCNNGG	1 cut(s)	836
BssMI	GATC	2 cut(s)	517, 832
BssT1I	CCWWGG	1 cut(s)	836
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	160, 259
Bst6I	CTCTTC	2 cut(s)	789, 843
BstAPI	GCANNNNNTGC	1 cut(s)	757
BstC8I	GCNNGC	4 cut(s)	174, 665, 680, 753
BstDEI	CTNAG	6 cut(s)	38, 62, 183, 498, 669, 864
BstF5I	GGATG	3 cut(s)	138, 700, 826
BstHHI	GCGC	3 cut(s)	582, 757, 1044
BstKTI	GATC	2 cut(s)	520, 835
BstMAI	GTCTC	3 cut(s)	166, 201, 791
BstMBI	GATC	2 cut(s)	517, 832
BstMCI	CGRYCG	1 cut(s)	991
BstMWI	GCNNNNNNNGC	4 cut(s)	425, 757, 958, 961
BstNI	CCWGG	1 cut(s)	385
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	383
BstSFI	CTRYAG	3 cut(s)	156, 423, 1026
BstV1I	GCAGC	9 cut(s)	409, 431, 437, 744, 959, 964, 967, 970, 973
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	69, 657
BtsCI	GGATG	3 cut(s)	138, 700, 826
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	2 cut(s)	56, 925
Cac8I	GCNNGC	4 cut(s)	174, 665, 680, 753
CfoI	GCGC	3 cut(s)	582, 757, 1044
Cfr10I	RCCGGY	1 cut(s)	990
Cfr13I	GGNCC	3 cut(s)	13, 68, 655
Csp6I	GTAC	3 cut(s)	807, 880, 931
CspAI	ACCGGT	1 cut(s)	990
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	2 cut(s)	277, 752
CviQI	GTAC	3 cut(s)	807, 880, 931
DdeI	CTNAG	6 cut(s)	38, 62, 183, 498, 669, 864
DpnI	GATC	2 cut(s)	519, 834
DpnII	GATC	2 cut(s)	517, 832
Eam1104I	CTCTTC	2 cut(s)	789, 843
EarI	CTCTTC	2 cut(s)	789, 843
EciI	GGCGGA	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	836
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	822
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRI	GAATTC	2 cut(s)	98, 187
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	836
EcoT22I	ATGCAT	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	836
FaeI	CATG	2 cut(s)	280, 755
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	3 cut(s)	463, 960, 998
FatI	CATG	2 cut(s)	276, 751
FauI	CCCGC	1 cut(s)	531
Fnu4HI	GCNGC	9 cut(s)	420, 423, 426, 758, 953, 956, 959, 962, 973
FokI	GGATG	3 cut(s)	125, 687, 833
Fsp4HI	GCNGC	9 cut(s)	420, 423, 426, 758, 953, 956, 959, 962, 973
FspBI	CTAG	4 cut(s)	453, 474, 810, 912
GlaI	GCGC	3 cut(s)	581, 756, 1043
GluI	GCNGC	9 cut(s)	420, 423, 426, 758, 953, 956, 959, 962, 973
HaeIII	GGCC	2 cut(s)	69, 657
HapII	CCGG	1 cut(s)	991
HhaI	GCGC	3 cut(s)	582, 757, 1044
Hin1II	CATG	2 cut(s)	280, 755
Hin6I	GCGC	3 cut(s)	580, 755, 1042
HinP1I	GCGC	3 cut(s)	580, 755, 1042
HinfI	GANTC	3 cut(s)	4, 218, 1063
HpaII	CCGG	1 cut(s)	991
HphI	GGTGA	3 cut(s)	144, 245, 271
Hpy188I	TCNGA	3 cut(s)	9, 186, 193
Hpy188III	TCNNGA	2 cut(s)	272, 1016
Hpy99I	CGWCG	1 cut(s)	941
HpyAV	CCTTC	5 cut(s)	4, 152, 595, 736, 797
HpyCH4III	ACNGT	2 cut(s)	160, 259
HpyCH4IV	ACGT	2 cut(s)	443, 1078
HpyCH4V	TGCA	6 cut(s)	90, 338, 346, 425, 751, 760
HpyF10VI	GCNNNNNNNGC	4 cut(s)	425, 757, 958, 961
HpyF3I	CTNAG	6 cut(s)	38, 62, 183, 498, 669, 864
HpySE526I	ACGT	2 cut(s)	443, 1078
Hsp92II	CATG	2 cut(s)	280, 755
HspAI	GCGC	3 cut(s)	580, 755, 1042
Kzo9I	GATC	2 cut(s)	517, 832
LmnI	GCTCC	1 cut(s)	398
LpnPI	CCDG	8 cut(s)	131, 158, 299, 370, 397, 623, 913, 1004
Lsp1109I	GCAGC	9 cut(s)	409, 431, 437, 744, 959, 964, 967, 970, 973
LweI	GCATC	1 cut(s)	1021
MaeI	CTAG	4 cut(s)	453, 474, 810, 912
MaeII	ACGT	2 cut(s)	443, 1078
MaeIII	GTNAC	2 cut(s)	683, 923
MalI	GATC	2 cut(s)	519, 834
MboI	GATC	2 cut(s)	517, 832
MboII	GAAGA	9 cut(s)	111, 544, 556, 637, 640, 721, 751, 806, 860
MfeI	CAATTG	1 cut(s)	1049
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	7 cut(s)	59, 187, 873, 934, 937, 1050, 1056
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	2 cut(s)	405, 1005
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	991
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	1049
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	4 cut(s)	425, 757, 958, 961
NdeII	GATC	2 cut(s)	517, 832
NlaIII	CATG	2 cut(s)	280, 755
NlaIV	GGNNCC	1 cut(s)	656
NmuCI	GTSAC	1 cut(s)	923
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	755
PcsI	WCGNNNNNNNCGW	1 cut(s)	1075
PfeI	GAWTC	2 cut(s)	4, 1063
PflMI	CCANNNNNTGG	1 cut(s)	446
PinAI	ACCGGT	1 cut(s)	990
PkrI	GCNGC	9 cut(s)	421, 424, 427, 759, 954, 957, 960, 963, 974
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	656
PspPI	GGNCC	3 cut(s)	13, 68, 655
PspPPI	RGGWCCY	1 cut(s)	13
PstI	CTGCAG	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	3 cut(s)	808, 881, 932
RsaNI	GTAC	3 cut(s)	807, 880, 931
SaqAI	TTAA	2 cut(s)	405, 1005
SatI	GCNGC	9 cut(s)	420, 423, 426, 758, 953, 956, 959, 962, 973
Sau3AI	GATC	2 cut(s)	517, 832
Sau96I	GGNCC	3 cut(s)	13, 68, 655
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	385
SfaNI	GCATC	1 cut(s)	1021
SfcI	CTRYAG	3 cut(s)	156, 423, 1026
SinI	GGWCC	1 cut(s)	13
SpeI	ACTAGT	2 cut(s)	452, 809
SphI	GCATGC	1 cut(s)	755
SsiI	CCGC	3 cut(s)	294, 538, 888
SspI	AATATT	1 cut(s)	1003
SspMI	CTAG	4 cut(s)	453, 474, 810, 912
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	836
TaaI	ACNGT	2 cut(s)	160, 259
TaiI	ACGT	2 cut(s)	446, 1081
TfiI	GAWTC	2 cut(s)	4, 1063
Tru1I	TTAA	2 cut(s)	405, 1005
Tru9I	TTAA	2 cut(s)	405, 1005
TscAI	CASTG	2 cut(s)	63, 932
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	9 cut(s)	419, 422, 425, 757, 952, 955, 958, 961, 972
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	3 cut(s)	17, 590, 807
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	2 cut(s)	63, 932
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	3 cut(s)	98, 178, 187
XceI	RCATGY	1 cut(s)	755
XspI	CTAG	4 cut(s)	453, 474, 810, 912
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.