Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

2302824 .. 2305774

Gene Structure 2951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03860.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGACCAGGATGTGACAAAGAAGCTGAAGGGATTGGATGGGCATGCAGTGCCAATTTCATATACAAGTTCCATCAGTTTCGAAGAGAATGAGGATGATTTGACAGGTGGAGCTGATGGAAACACTCCAGCAGACCACCATATGCAAGGGGAAAAGGGGTCTGAGAGCTTGCGATCTGCTGATACTGATGTCGAAGTCCATCCAAACTATGAAGGGGATACAAATAGGAATTTCACAAGCTCTAGTGATTTTGTGCAAGTACCTATTGGTTCTCTCTATGAGAACATCGGAACTAGCACAGCTATTTTCTCTCCTTCTGCTGGTGAAAGGTTGCCTTTTGATGCAATGGCTCTGGATGAAAAGCAGTTGAAACGAGAGAAAAGAAAACAGGCTAACAGAGAATCTGCAAGGAGATCTAGGATGAGGAAGCAGGCTGAATATGAGGAGCTGGTCAAAAGTTGTGATTCTTTAAGCACAGAACAGATGGACCTTAAATCTGAACTAGATCAAGTGAAAGTGGCAGCGGAAAAACTGAGGCTTGAAAATGCTGCATTAAAGGAGCAGCTGAAAAACGCACAGATACTGCAGGAAGGAGGGAATGGTTCCCCTAAGACTGAAGGGGACGTCACCCTGCCAAATGATGCTAAGGACATACTTAGCAATTTGGGTACCGTAAGCAGTAACGCTCAGCTGGACTGCGAGACACATGAAACTTCCTCTGAAACAATTACCCGGCTCAATCAGTTGTTGGAATCAAGCTCTAGGACTGATGCTGTTGCTGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

263

Amino Acids

28.7

Weight (kDa)

4.8

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	120 - 182	1.8e-15	bZIP transcription factor
bZIP_2	PF07716	124 - 172	1.4e-06	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	627
Acc65I	GGTACC	1 cut(s)	668
AccB1I	GGYRCC	1 cut(s)	668
AciI	CCGC	1 cut(s)	524
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	2 cut(s)	47, 636
AcyI	GRCGYC	1 cut(s)	624
AfaI	GTAC	2 cut(s)	261, 670
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	370, 542
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	9 cut(s)	25, 113, 168, 240, 302, 448, 565, 691, 759
AluI	AGCT	9 cut(s)	25, 113, 168, 240, 302, 448, 565, 691, 759
Alw26I	GTCTC	1 cut(s)	695
AlwNI	CAGNNNCTG	1 cut(s)	583
ApeKI	GCWGC	4 cut(s)	521, 548, 562, 779
ApoI	RAATTY	1 cut(s)	229
Asp718I	GGTACC	1 cut(s)	668
AspS9I	GGNCC	2 cut(s)	4, 487
AsuC2I	CCSGG	1 cut(s)	733
AsuHPI	GGTGA	2 cut(s)	335, 619
AsuII	TTCGAA	1 cut(s)	81
AvaII	GGWCC	2 cut(s)	4, 487
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BanI	GGYRCC	1 cut(s)	668
BbvI	GCAGC	4 cut(s)	533, 535, 574, 766
BccI	CCATC	5 cut(s)	32, 80, 110, 207, 478
BciT130I	CCWGG	1 cut(s)	8
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	733
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	6 cut(s)	243, 294, 417, 503, 762, 783
BfmI	CTRYAG	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	4 cut(s)	522, 549, 563, 780
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	4 cut(s)	523, 550, 564, 781
Bme1390I	CCNGG	2 cut(s)	8, 733
Bme18I	GGWCC	2 cut(s)	4, 487
BmgT120I	GGNCC	2 cut(s)	4, 487
BmiI	GGNNCC	2 cut(s)	604, 670
BmrFI	CCNGG	2 cut(s)	8, 733
BmsI	GCATC	3 cut(s)	331, 631, 760
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	687
Bpu14I	TTCGAA	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	733
BsaHI	GRCGYC	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	6 cut(s)	16, 43, 100, 199, 361, 426
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	3 cut(s)	153, 524, 701
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	4 cut(s)	533, 535, 574, 766
BshNI	GGYRCC	1 cut(s)	668
BsiSI	CCGG	1 cut(s)	733
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	695
BsmFI	GGGAC	1 cut(s)	635
Bsp119I	TTCGAA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	173, 413, 505
Bsp1720I	GCTNAGC	1 cut(s)	687
BspACI	CCGC	1 cut(s)	524
BspCNI	CTCAG	3 cut(s)	154, 525, 700
BspLI	GGNNCC	2 cut(s)	604, 670
BspMAI	CTGCAG	1 cut(s)	588
BspT104I	TTCGAA	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	351
BssMI	GATC	3 cut(s)	173, 413, 505
BssNI	GRCGYC	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	624
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	45, 170, 432
BstDEI	CTNAG	6 cut(s)	162, 533, 609, 645, 656, 687
BstF5I	GGATG	6 cut(s)	16, 43, 100, 199, 361, 426
BstKTI	GATC	3 cut(s)	176, 416, 508
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	3 cut(s)	173, 413, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 779
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	6, 731
BstSFI	CTRYAG	1 cut(s)	584
BstV1I	GCAGC	4 cut(s)	533, 535, 574, 766
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BsuI	GTATCC	1 cut(s)	211
BtsCI	GGATG	6 cut(s)	16, 43, 100, 199, 361, 426
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	45, 170, 432
CaiI	CAGNNNCTG	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	4, 487
Csp6I	GTAC	2 cut(s)	260, 669
CviAII	CATG	2 cut(s)	44, 707
CviQI	GTAC	2 cut(s)	260, 669
DdeI	CTNAG	6 cut(s)	162, 533, 609, 645, 656, 687
DpnI	GATC	3 cut(s)	175, 415, 507
DpnII	GATC	3 cut(s)	173, 413, 505
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	4, 487
Eco57I	CTGAAG	2 cut(s)	47, 636
EcoRII	CCWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	47, 710
FalI	AAGNNNNNCTT	2 cut(s)	319, 351
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	2 cut(s)	43, 706
FauNDI	CATATG	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	522, 549, 563, 780
FokI	GGATG	6 cut(s)	23, 50, 107, 186, 368, 433
Fsp4HI	GCNGC	4 cut(s)	522, 549, 563, 780
FspBI	CTAG	6 cut(s)	243, 294, 417, 503, 762, 783
GluI	GCNGC	4 cut(s)	522, 549, 563, 780
GsuI	CTGGAG	1 cut(s)	111
HapII	CCGG	1 cut(s)	733
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	2 cut(s)	47, 710
HinfI	GANTC	3 cut(s)	401, 464, 752
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	2 cut(s)	335, 619
Hpy188I	TCNGA	4 cut(s)	163, 290, 499, 721
Hpy188III	TCNNGA	1 cut(s)	353
HpyAV	CCTTC	5 cut(s)	22, 206, 324, 584, 611
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	7 cut(s)	47, 145, 256, 344, 407, 551, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 779
HpyF3I	CTNAG	6 cut(s)	162, 533, 609, 645, 656, 687
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	2 cut(s)	47, 710
KpnI	GGTACC	1 cut(s)	672
Kzo9I	GATC	3 cut(s)	173, 413, 505
LmnI	GCTCC	3 cut(s)	110, 445, 559
Lsp1109I	GCAGC	4 cut(s)	533, 535, 574, 766
LweI	GCATC	3 cut(s)	331, 631, 760
MaeI	CTAG	6 cut(s)	243, 294, 417, 503, 762, 783
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	3 cut(s)	13, 625, 680
MalI	GATC	3 cut(s)	175, 415, 507
MboI	GATC	3 cut(s)	173, 413, 505
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	1 cut(s)	413
MluCI	AATT	4 cut(s)	54, 229, 661, 726
MmeI	TCCRAC	1 cut(s)	729
MnlI	CCTC	6 cut(s)	85, 417, 436, 528, 587, 727
MseI	TTAA	3 cut(s)	470, 492, 554
MspA1I	CMGCKG	3 cut(s)	524, 565, 691
MspI	CCGG	1 cut(s)	733
MspR9I	CCNGG	2 cut(s)	8, 733
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	49, 779
NciI	CCSGG	1 cut(s)	733
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	3 cut(s)	173, 413, 505
NlaIII	CATG	2 cut(s)	47, 710
NlaIV	GGNNCC	2 cut(s)	604, 670
NmuCI	GTSAC	2 cut(s)	13, 625
NspI	RCATGY	1 cut(s)	47
NspV	TTCGAA	1 cut(s)	81
PaeI	GCATGC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	401, 464, 752
PkrI	GCNGC	4 cut(s)	523, 550, 564, 781
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	604, 670
PspPI	GGNCC	2 cut(s)	4, 487
PstI	CTGCAG	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	413
PvuII	CAGCTG	2 cut(s)	565, 691
RsaI	GTAC	2 cut(s)	261, 670
RsaNI	GTAC	2 cut(s)	260, 669
SaqAI	TTAA	3 cut(s)	470, 492, 554
SatI	GCNGC	4 cut(s)	522, 549, 563, 780
Sau3AI	GATC	3 cut(s)	173, 413, 505
Sau96I	GGNCC	2 cut(s)	4, 487
ScrFI	CCNGG	2 cut(s)	8, 733
SfaNI	GCATC	3 cut(s)	331, 631, 760
SfcI	CTRYAG	1 cut(s)	584
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	2 cut(s)	4, 487
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	4 cut(s)	54, 229, 661, 726
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	6 cut(s)	243, 294, 417, 503, 762, 783
StyD4I	CCNGG	2 cut(s)	6, 731
TaaI	ACNGT	1 cut(s)	673
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	2 cut(s)	81, 192
TasI	AATT	4 cut(s)	54, 229, 661, 726
TfiI	GAWTC	3 cut(s)	401, 464, 752
Tru1I	TTAA	3 cut(s)	470, 492, 554
Tru9I	TTAA	3 cut(s)	470, 492, 554
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	13, 625
TseI	GCWGC	4 cut(s)	521, 548, 562, 779
Tsp45I	GTSAC	2 cut(s)	13, 625
TspDTI	ATGAA	4 cut(s)	48, 225, 372, 723
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	4, 487
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	47
XspI	CTAG	6 cut(s)	243, 294, 417, 503, 762, 783
ZraI	GACGTC	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.