Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

23623537 .. 23625308

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1099900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAACGAGAGAAAAGGAAACAGGCTAACAGAGAATCTGCAAGGAGATCTAGGTTAAGAAAGCAGGCTGAATATGAGGAATTGGTGAAGACATGTGAATCCTTAAACGCGGAGAAAATGGCTCTTCAATCCAAAATAAAAAAATTGAAAGAGGATTCAGAGACACTGAGGCTTGAAAATGCTGCGTTAAGGGAGAAGCTGAAAAATGCTCAGGCAGTGACGCAAGGAGGGATTGCTTCAGTCAAGATTGAAGTAGACTTGGAGCTGCCAAATGATGCCAAAAATATAATTAGCAACTTGGGTTCTGTAAGCAGGAATGGTGAACTGGATTGCGAGAAACATGAAAGTTCCATGTCTGAAGCCAAGTTCCATCAGCTGTTGGAATCAAACTCTAGGACCGATGCTGTTGCTGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

140

Amino Acids

15.7

Weight (kDa)

9.27

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	1 - 60	8.6e-15	bZIP transcription factor
bZIP_2	PF07716	2 - 51	3.9e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	110
AciI	CCGC	1 cut(s)	110
AcuI	CTGAAG	2 cut(s)	222, 378
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	128, 148, 176, 251
AluBI	AGCT	3 cut(s)	199, 265, 376
AluI	AGCT	3 cut(s)	199, 265, 376
Alw26I	GTCTC	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	182, 265, 410
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	97, 332
AvaII	GGWCC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	169, 252, 397
BccI	CCATC	1 cut(s)	378
BcgI	CGANNNNNNTGC	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	3 cut(s)	51, 393, 414
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	3 cut(s)	183, 266, 411
BlsI	GCNGC	3 cut(s)	184, 267, 412
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmsI	GCATC	2 cut(s)	265, 391
BpiI	GAAGAC	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	158, 224
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	3 cut(s)	169, 252, 397
Bsh1236I	CGCG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	159, 223
BspFNI	CGCG	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	330
BssMI	GATC	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	167, 210
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	96
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	169, 252, 397
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	164, 222
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	396
CseI	GACGC	1 cut(s)	229
CviAII	CATG	3 cut(s)	93, 341, 352
CviJI	RGCY	8 cut(s)	26, 68, 122, 172, 199, 265, 362, 376
CviKI_1	RGCY	8 cut(s)	26, 68, 122, 172, 199, 265, 362, 376
DdeI	CTNAG	2 cut(s)	167, 210
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	396
Eco57I	CTGAAG	2 cut(s)	222, 378
FaeI	CATG	3 cut(s)	96, 344, 355
FaiI	YATR	5 cut(s)	75, 94, 287, 342, 353
FatI	CATG	3 cut(s)	92, 340, 351
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	183, 266, 411
Fsp4HI	GCNGC	3 cut(s)	183, 266, 411
FspBI	CTAG	3 cut(s)	51, 393, 414
GluI	GCNGC	3 cut(s)	183, 266, 411
HgaI	GACGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	96, 344, 355
HinfI	GANTC	4 cut(s)	35, 98, 155, 383
HphI	GGTGA	2 cut(s)	97, 332
Hpy166II	GTNNAC	2 cut(s)	256, 323
Hpy188I	TCNGA	2 cut(s)	160, 358
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	256, 323
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	167, 210
Hsp92II	CATG	3 cut(s)	96, 344, 355
Kzo9I	GATC	1 cut(s)	47
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	8, 50, 197, 298, 311
Lsp1109I	GCAGC	3 cut(s)	169, 252, 397
LweI	GCATC	2 cut(s)	265, 391
MaeI	CTAG	3 cut(s)	51, 393, 414
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MboII	GAAGA	2 cut(s)	100, 116
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	3 cut(s)	80, 143, 288
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	4 cut(s)	70, 145, 162, 221
MseI	TTAA	3 cut(s)	56, 104, 188
MspA1I	CMGCKG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	1 cut(s)	47
NlaIII	CATG	3 cut(s)	96, 344, 355
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	96
PciI	ACATGT	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	35, 98, 155, 383
PkrI	GCNGC	3 cut(s)	184, 267, 412
PscI	ACATGT	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	56, 104, 188
SatI	GCNGC	3 cut(s)	183, 266, 411
Sau3AI	GATC	1 cut(s)	47
Sau96I	GGNCC	1 cut(s)	396
SetI	ASST	4 cut(s)	56, 201, 267, 378
SfaNI	GCATC	2 cut(s)	265, 391
SinI	GGWCC	1 cut(s)	396
Sse9I	AATT	3 cut(s)	80, 143, 288
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	3 cut(s)	51, 393, 414
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	3 cut(s)	80, 143, 288
TfiI	GAWTC	4 cut(s)	35, 98, 155, 383
Tru1I	TTAA	3 cut(s)	56, 104, 188
Tru9I	TTAA	3 cut(s)	56, 104, 188
TscAI	CASTG	2 cut(s)	171, 222
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	3 cut(s)	182, 265, 410
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	17, 357
TspRI	CASTG	2 cut(s)	171, 222
VpaK11BI	GGWCC	1 cut(s)	396
XceI	RCATGY	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	3 cut(s)	51, 393, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.