Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

14823765 .. 14824733

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTCTTCAATTCAAAATAGAAAAATTGAAAGGGGATTCAGAGACACTGAGGCTTGAAAATGCCGCATTAAGGGAGAAGCTGAAAAATGCTCAGGCAGTGACGCAAGGAGGGATTGCTGCAGTCAAGATTGAAGTAGACTTGGAGCTGCCAAATGATGCCAAAAATATAATTAGCAACTTGGGTTCTGTAAGCAGGAATGGTGAACTGGATCGCGAGAAACATGAAAGTTCCATGTCTGAAGCCAAGTTCCATCAGCTGTTGGAATCAAACTCTAGGACCGATGCTGTTGCTGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

101

Amino Acids

10.99

Weight (kDa)

6.12

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	216
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	5 cut(s)	11, 16, 31, 59, 134
AluBI	AGCT	3 cut(s)	82, 148, 259
AluI	AGCT	3 cut(s)	82, 148, 259
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	219
ApeKI	GCWGC	3 cut(s)	119, 148, 293
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	106, 135, 280
BccI	CCATC	1 cut(s)	261
BcgI	CGANNNNNNTGC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	276, 297
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	4 cut(s)	66, 120, 149, 294
BlsI	GCNGC	4 cut(s)	67, 121, 150, 295
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmsI	GCATC	2 cut(s)	148, 274
Bpu10I	CCTNAGC	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	41, 107
BseNI	ACTGG	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	106, 135, 280
Bsh1236I	CGCG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	211
Bsp68I	TCGCGA	1 cut(s)	216
BspACI	CCGC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	42, 106
BspFNI	CGCG	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	50, 93
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	106, 135, 280
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	47, 105
BtuMI	TCGCGA	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	1 cut(s)	112
CviAII	CATG	2 cut(s)	224, 235
CviJI	RGCY	6 cut(s)	5, 55, 82, 148, 245, 259
CviKI_1	RGCY	6 cut(s)	5, 55, 82, 148, 245, 259
DdeI	CTNAG	2 cut(s)	50, 93
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	261
FaeI	CATG	2 cut(s)	227, 238
FaiI	YATR	3 cut(s)	170, 225, 236
FatI	CATG	2 cut(s)	223, 234
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	66, 120, 149, 294
Fsp4HI	GCNGC	4 cut(s)	66, 120, 149, 294
FspBI	CTAG	2 cut(s)	276, 297
GluI	GCNGC	4 cut(s)	66, 120, 149, 294
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	227, 238
HinfI	GANTC	2 cut(s)	38, 266
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	139, 206
Hpy188I	TCNGA	2 cut(s)	43, 241
Hpy188III	TCNNGA	2 cut(s)	127, 215
Hpy8I	GTNNAC	2 cut(s)	139, 206
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	50, 93
Hsp92II	CATG	2 cut(s)	227, 238
Kzo9I	GATC	1 cut(s)	211
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	80, 181, 194
Lsp1109I	GCAGC	3 cut(s)	106, 135, 280
LweI	GCATC	2 cut(s)	148, 274
MaeI	CTAG	2 cut(s)	276, 297
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MluCI	AATT	3 cut(s)	11, 26, 171
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	2 cut(s)	45, 104
MseI	TTAA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	227, 238
NmuCI	GTSAC	1 cut(s)	100
NruI	TCGCGA	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	38, 266
PkrI	GCNGC	4 cut(s)	67, 121, 150, 295
PspPI	GGNCC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	259
RruI	TCGCGA	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	4 cut(s)	66, 120, 149, 294
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	279
SetI	ASST	3 cut(s)	84, 150, 261
SfaNI	GCATC	2 cut(s)	148, 274
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	279
Sse9I	AATT	3 cut(s)	11, 26, 171
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	2 cut(s)	276, 297
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	3 cut(s)	11, 26, 171
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	38, 266
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	2 cut(s)	54, 105
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	3 cut(s)	119, 148, 293
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	54, 105
VpaK11BI	GGWCC	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	2 cut(s)	276, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.