Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

19364715 .. 19368434

Gene Structure 3720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1119500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGACCAAGATGTAACAAAGAAGTTAAAGGGATCGGATGGAACTGCAGTGCCAGTTGGATATGACAATCCCAAGGAGGGTGATAACGGGAACCTAGTCCTTGAGGCATCAAAGAGTTTGGAACAAAATATTGATGGTTTGAAAGATGGAAATGATGGTGACACTAAAGCAAACCACCTCACTCAGAGGAAAAATGGGTCCGACAGCATGCAATCTGCTGAAAATGATGTGAAAGTCCATACTCAGGTCAGTCCAACAACTGAAGAGGAAGTGAATGAGATTTCTACAAATGATTCTGGTTATGCGCCTCCTGCTGCTGGTTTTGTGGGAGTATCTCTTGGTTCACCATATGAGAAAATAGGAGTTAGCACAGCCTTTGTCGCTTCGTCTACTGGTGCTCAGTTGCCTTTTGGTACTTCAGTTCTGGATGAAAGGCAGATGAAACGAGAGAAAAGGAAACAAGCTAACAGAGAATCTGCAATGAGATCTAGGTCAAGGAAGCAGGCTGAATATGAGGAACTGGTGAAGACATGTGAATCCTTAAACGAGGAGAAAATTGCTCTTCAATCCAAAATGGAAGAATTGAAAGGGGATTCAAAGACGCTGAGGCTTGAAAATGCCGCATTAAGGCTGAAAAATGCTCAGGCGGTGACGCAAGGAGGGATTGTTTCAGTTAAGATTGAAGTAGACTTGGACCTGCCAAATGATGCCAAAAATATACTGAGCAATTTGGGTTCTGTAAGCAGGAATGATGAACTGGATCGCGAGAAACATGAAAGTTCCACGTCTGAAACCAAGTTCCATCAGCTGATGGAATCAAACGCTAGGACTGATGCTGTTGCTGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

284

Amino Acids

30.76

Weight (kDa)

5.19

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	144 - 206	3.2e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	705
AccI	GTMKAC	2 cut(s)	389, 687
AccII	CGCG	1 cut(s)	765
AciI	CCGC	2 cut(s)	621, 647
AclWI	GGATC	2 cut(s)	40, 768
AcuI	CTGAAG	2 cut(s)	282, 402
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	4 cut(s)	77, 244, 317, 627
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	6 cut(s)	142, 566, 586, 597, 614, 683
AjiI	CACGTC	1 cut(s)	786
AluBI	AGCT	2 cut(s)	464, 808
AluI	AGCT	2 cut(s)	464, 808
Alw21I	GWGCWC	1 cut(s)	400
AlwI	GGATC	2 cut(s)	40, 768
ApeKI	GCWGC	2 cut(s)	314, 842
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	4, 198, 694
AsuHPI	GGTGA	5 cut(s)	92, 170, 336, 535, 661
AvaII	GGWCC	3 cut(s)	4, 198, 694
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	605
BbvI	GCAGC	2 cut(s)	301, 829
BccI	CCATC	6 cut(s)	32, 128, 140, 149, 805, 810
BfaI	CTAG	4 cut(s)	95, 489, 825, 846
BfmI	CTRYAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	705
BglII	AGATCT	1 cut(s)	485
BisI	GCNGC	3 cut(s)	315, 621, 843
BlsI	GCNGC	3 cut(s)	316, 622, 844
Bme18I	GGWCC	3 cut(s)	4, 198, 694
BmgBI	CACGTC	1 cut(s)	786
BmgT120I	GGNCC	3 cut(s)	4, 198, 694
BmiI	GGNNCC	2 cut(s)	92, 199
BmsI	GCATC	3 cut(s)	116, 697, 823
BpiI	GAAGAC	1 cut(s)	533
Bpu10I	CCTNAGC	2 cut(s)	605, 642
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 244, 317, 627
Bse1I	ACTGG	4 cut(s)	53, 397, 525, 762
Bse3DI	GCAATG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	43, 433
BseLI	CCNNNNNNNGG	4 cut(s)	77, 244, 317, 627
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	6 cut(s)	197, 257, 413, 596, 656, 713
BseNI	ACTGG	4 cut(s)	53, 397, 525, 762
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	2 cut(s)	301, 829
Bsh1236I	CGCG	1 cut(s)	765
BsiHKAI	GWGCWC	1 cut(s)	400
BslI	CCNNNNNNNGG	4 cut(s)	77, 244, 317, 627
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	32, 485, 760
Bsp68I	TCGCGA	1 cut(s)	765
BspACI	CCGC	2 cut(s)	621, 647
BspCNI	CTCAG	6 cut(s)	196, 256, 412, 597, 655, 714
BspFNI	CGCG	1 cut(s)	765
BspLI	GGNNCC	2 cut(s)	92, 199
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	705
BspPI	GGATC	2 cut(s)	40, 768
BspQI	GCTCTTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	4 cut(s)	53, 397, 525, 762
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	32, 485, 760
BssT1I	CCWWGG	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	258, 567
BstC8I	GCNNGC	2 cut(s)	209, 504
BstDEI	CTNAG	6 cut(s)	183, 243, 399, 605, 642, 722
BstF5I	GGATG	2 cut(s)	43, 433
BstFNI	CGCG	1 cut(s)	765
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	3 cut(s)	35, 488, 763
BstMBI	GATC	3 cut(s)	32, 485, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 380, 842
BstNSI	RCATGY	2 cut(s)	211, 534
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	765
BstV1I	GCAGC	2 cut(s)	301, 829
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BtrI	CACGTC	1 cut(s)	786
BtsCI	GGATG	2 cut(s)	43, 433
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
BtuMI	TCGCGA	1 cut(s)	765
BveI	ACCTGC	1 cut(s)	705
Cac8I	GCNNGC	2 cut(s)	209, 504
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	4, 198, 694
CseI	GACGC	2 cut(s)	610, 661
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	3 cut(s)	208, 531, 773
CviJI	RGCY	6 cut(s)	374, 464, 506, 610, 631, 808
CviKI_1	RGCY	6 cut(s)	374, 464, 506, 610, 631, 808
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	6 cut(s)	183, 243, 399, 605, 642, 722
DpnI	GATC	3 cut(s)	34, 487, 762
DpnII	GATC	3 cut(s)	32, 485, 760
Eam1104I	CTCTTC	2 cut(s)	258, 567
EarI	CTCTTC	2 cut(s)	258, 567
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	3 cut(s)	4, 198, 694
Eco57I	CTGAAG	2 cut(s)	282, 402
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	211, 534, 776
FatI	CATG	3 cut(s)	207, 530, 772
FauNDI	CATATG	1 cut(s)	349
FblI	GTMKAC	2 cut(s)	389, 687
Fnu4HI	GCNGC	3 cut(s)	315, 621, 843
FokI	GGATG	2 cut(s)	50, 440
Fsp4HI	GCNGC	3 cut(s)	315, 621, 843
FspBI	CTAG	4 cut(s)	95, 489, 825, 846
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	3 cut(s)	315, 621, 843
HgaI	GACGC	2 cut(s)	610, 661
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	211, 534, 776
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	5 cut(s)	293, 473, 536, 593, 815
HphI	GGTGA	5 cut(s)	92, 170, 336, 535, 661
Hpy166II	GTNNAC	3 cut(s)	344, 390, 688
Hpy188I	TCNGA	4 cut(s)	37, 186, 202, 790
Hpy188III	TCNNGA	2 cut(s)	425, 764
Hpy8I	GTNNAC	3 cut(s)	344, 390, 688
HpyCH4IV	ACGT	1 cut(s)	785
HpyCH4V	TGCA	3 cut(s)	47, 211, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 380, 842
HpyF3I	CTNAG	6 cut(s)	183, 243, 399, 605, 642, 722
HpySE526I	ACGT	1 cut(s)	785
Hsp92II	CATG	3 cut(s)	211, 534, 776
HspAI	GCGC	1 cut(s)	305
Kzo9I	GATC	3 cut(s)	32, 485, 760
LguI	GCTCTTC	1 cut(s)	567
Lsp1109I	GCAGC	2 cut(s)	301, 829
LweI	GCATC	3 cut(s)	116, 697, 823
MaeI	CTAG	4 cut(s)	95, 489, 825, 846
MaeII	ACGT	1 cut(s)	785
MaeIII	GTNAC	3 cut(s)	13, 158, 649
MalI	GATC	3 cut(s)	34, 487, 762
MboI	GATC	3 cut(s)	32, 485, 760
MboII	GAAGA	4 cut(s)	275, 538, 554, 590
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	3 cut(s)	555, 581, 727
MmeI	TCCRAC	3 cut(s)	37, 225, 278
MseI	TTAA	4 cut(s)	26, 542, 626, 675
MspA1I	CMGCKG	1 cut(s)	808
MvnI	CGCG	1 cut(s)	765
MwoI	GCNNNNNNNGC	3 cut(s)	311, 380, 842
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	32, 485, 760
NlaIII	CATG	3 cut(s)	211, 534, 776
NlaIV	GGNNCC	2 cut(s)	92, 199
NmuCI	GTSAC	2 cut(s)	158, 649
NruI	TCGCGA	1 cut(s)	765
NspI	RCATGY	2 cut(s)	211, 534
PaeI	GCATGC	1 cut(s)	211
PciI	ACATGT	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	567
PfeI	GAWTC	5 cut(s)	293, 473, 536, 593, 815
PkrI	GCNGC	3 cut(s)	316, 622, 844
PscI	ACATGT	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	92, 199
PspPI	GGNCC	3 cut(s)	4, 198, 694
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	808
RruI	TCGCGA	1 cut(s)	765
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	26, 542, 626, 675
SatI	GCNGC	3 cut(s)	315, 621, 843
Sau3AI	GATC	3 cut(s)	32, 485, 760
Sau96I	GGNCC	3 cut(s)	4, 198, 694
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	8 cut(s)	96, 180, 249, 466, 494, 699, 788, 810
SfaNI	GCATC	3 cut(s)	116, 697, 823
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	3 cut(s)	4, 198, 694
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	555, 581, 727
SsiI	CCGC	2 cut(s)	621, 647
SspI	AATATT	1 cut(s)	130
SspMI	CTAG	4 cut(s)	95, 489, 825, 846
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	788
TasI	AATT	3 cut(s)	555, 581, 727
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	5 cut(s)	293, 473, 536, 593, 815
Tru1I	TTAA	4 cut(s)	26, 542, 626, 675
Tru9I	TTAA	4 cut(s)	26, 542, 626, 675
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	158, 649
TseI	GCWGC	2 cut(s)	314, 842
Tsp45I	GTSAC	2 cut(s)	158, 649
TspDTI	ATGAA	4 cut(s)	444, 455, 768, 789
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	3 cut(s)	4, 198, 694
XceI	RCATGY	2 cut(s)	211, 534
XmiI	GTMKAC	2 cut(s)	389, 687
XspI	CTAG	4 cut(s)	95, 489, 825, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.