Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Reverse (-)

11468041 .. 11472391

Gene Structure 4351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG154400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCTCTAGAGTGCCTTAACCTCTACAATTTAGTAAGATCTCATTTAATTACCAGTTTTCAACCTTCACCGCCGTTATCCCCTGTCGACATCTCACCACAATCCAACACCTTCCCCGCCTCTTTTACGACGTCGTTCTCCTCCACAAGAAAACCCCCTTTGTCCCCGGAAATTTCCAAACCCAGTTTTTTCGAGGGCAATATGGACCAAGATGTAACAAAGAAGTTCAAGGGATTGGATGGGCATGCAGTACCAATTGCATATGTAAGTTCCAAGGGAAATTCTGGGCACCCACTTCTTGAGGCATCCAAGAGTTTCGAAGAGAATAAGGATGGTTTGACAGGCGGAGCTGATGGAAACACTCGAGCAGACCACCACACGCAAGGGAAAAATGGGTCTGACAGCGTGCCAACTGCTGATAATGATGTGAAAGACCATCCCCAGGTCCATCCAAACAATGAAGGGGAAATAAATAGGAACTTCACAACCTCTAATGATCTTGTGCGAGTACCTATTGGTTCTCCCTATGAGAAAATCGCAACTAGCACACCTTTCTTCTCTCCTTCTGCTGGTGAAAGGTTGCCTTTTGATGCAATGGTTCTGGATGAAAAGCAATTGAAACGAGAGAAAAGAAAACAGGCTAACAGAGAATCTGCAAGGAGATCTAGGATGAGGAAGCAGGCTGAATACGAGGAGCTGATGAAAAGTTGTGATGCTTTAAGCACAGAACAGATGGACCTTAAATCTGAACTAGATCAATTGAAAGTGGATGCAGAAAAAATGAGGCTTGAAAATGCTGCATTAAGGGAGCAGCTGAAAAATGCACAGGTAATGCAGGAAGGAGGGAACGCTTCCCCTAAGACTGAAGGTGACTTCACCCTGCCAAATGATGCTAAGAACATACTTACCAATTTGGGTTCTGTAAGCAGTAATGCTCCGCCGGATTGTGAGACACATGAAACTTCTATTTCTGAAACAATTACCCGGCTCCATCAGTTGTTGGAATCAAGCTCTAGGACTGATGCTGTTGCTGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

346

Amino Acids

38.03

Weight (kDa)

5.68

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	203 - 265	1.5e-15	bZIP transcription factor
bZIP_2	PF07716	207 - 255	3.7e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	4 cut(s)	71, 117, 345, 938
AcsI	RAATTY	2 cut(s)	171, 280
AcuI	CTGAAG	1 cut(s)	885
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	252, 510
AfiI	CCNNNNNNNGG	2 cut(s)	442, 569
AgsI	TTSAA	5 cut(s)	62, 229, 619, 763, 791
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	4 cut(s)	350, 697, 814, 1011
AluI	AGCT	4 cut(s)	350, 697, 814, 1011
Alw26I	GTCTC	2 cut(s)	9, 944
Ama87I	CYCGRG	1 cut(s)	363
ApeKI	GCWGC	3 cut(s)	797, 811, 1031
ApoI	RAATTY	2 cut(s)	171, 280
AspS9I	GGNCC	3 cut(s)	205, 445, 736
AsuC2I	CCSGG	2 cut(s)	167, 985
AsuHPI	GGTGA	5 cut(s)	60, 87, 584, 868, 881
AsuII	TTCGAA	1 cut(s)	318
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	3 cut(s)	205, 445, 736
BaeGI	GKGCMC	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	784, 823, 1018
BccI	CCATC	7 cut(s)	233, 326, 347, 444, 456, 727, 999
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	443
BcnI	CCSGG	2 cut(s)	167, 985
BcoDI	GTCTC	2 cut(s)	9, 944
BfaI	CTAG	6 cut(s)	8, 543, 666, 752, 1014, 1035
BglII	AGATCT	2 cut(s)	38, 662
BisI	GCNGC	3 cut(s)	798, 812, 1032
BlsI	GCNGC	3 cut(s)	799, 813, 1033
Bme1390I	CCNGG	3 cut(s)	167, 443, 985
Bme18I	GGWCC	3 cut(s)	205, 445, 736
BmeT110I	CYCGRG	1 cut(s)	363
BmgT120I	GGNCC	3 cut(s)	205, 445, 736
BmiI	GGNNCC	2 cut(s)	290, 989
BmrFI	CCNGG	3 cut(s)	167, 443, 985
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	6 cut(s)	314, 580, 703, 760, 880, 1012
BmuI	ACTGGG	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	167, 985
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	165, 273, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 569
Bse1I	ACTGG	2 cut(s)	54, 183
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	165, 273, 441
BseGI	GGATG	8 cut(s)	244, 305, 337, 436, 448, 610, 675, 775
BseLI	CCNNNNNNNGG	2 cut(s)	442, 569
BseMI	GCAATG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	54, 183
BseRI	GAGGAG	2 cut(s)	130, 707
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	784, 823, 1018
BshNI	GGYRCC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	3 cut(s)	167, 941, 985
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	442, 569
BsmAI	GTCTC	2 cut(s)	9, 944
BsmFI	GGGAC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	38, 496, 662, 754
BspACI	CCGC	4 cut(s)	71, 117, 345, 938
BspLI	GGNNCC	2 cut(s)	290, 989
BspT104I	TTCGAA	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	54, 183
BssECI	CCNNGG	3 cut(s)	165, 273, 441
BssMI	GATC	4 cut(s)	38, 496, 662, 754
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	3 cut(s)	246, 407, 681
BstDEI	CTNAG	2 cut(s)	858, 894
BstF5I	GGATG	8 cut(s)	244, 305, 337, 436, 448, 610, 675, 775
BstKTI	GATC	4 cut(s)	41, 499, 665, 757
BstMAI	GTCTC	2 cut(s)	9, 944
BstMBI	GATC	4 cut(s)	38, 496, 662, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	1031
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	165, 441, 983
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	784, 823, 1018
BstX2I	RGATCY	2 cut(s)	38, 662
BstYI	RGATCY	2 cut(s)	38, 662
BtsCI	GGATG	8 cut(s)	244, 305, 337, 436, 448, 610, 675, 775
Cac8I	GCNNGC	3 cut(s)	246, 407, 681
Cfr13I	GGNCC	3 cut(s)	205, 445, 736
Csp6I	GTAC	2 cut(s)	251, 509
CviAII	CATG	2 cut(s)	245, 956
CviJI	RGCY	8 cut(s)	350, 641, 683, 697, 787, 814, 988, 1011
CviKI_1	RGCY	8 cut(s)	350, 641, 683, 697, 787, 814, 988, 1011
CviQI	GTAC	2 cut(s)	251, 509
DdeI	CTNAG	2 cut(s)	858, 894
DpnI	GATC	4 cut(s)	40, 498, 664, 756
DpnII	GATC	4 cut(s)	38, 496, 662, 754
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	2 cut(s)	360, 927
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	3 cut(s)	205, 445, 736
Eco57I	CTGAAG	1 cut(s)	885
Eco88I	CYCGRG	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	248, 959
FaiI	YATR	7 cut(s)	203, 246, 262, 264, 528, 902, 957
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	244, 955
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	798, 812, 1032
FokI	GGATG	8 cut(s)	251, 292, 344, 423, 435, 617, 682, 782
Fsp4HI	GCNGC	3 cut(s)	798, 812, 1032
FspBI	CTAG	6 cut(s)	8, 543, 666, 752, 1014, 1035
GluI	GCNGC	3 cut(s)	798, 812, 1032
HapII	CCGG	3 cut(s)	167, 941, 985
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	248, 959
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	650, 1004
HpaII	CCGG	3 cut(s)	167, 941, 985
HphI	GGTGA	5 cut(s)	60, 87, 584, 868, 881
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	400, 748, 973
Hpy188III	TCNNGA	3 cut(s)	8, 299, 602
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	2 cut(s)	133, 136
HpyAV	CCTTC	6 cut(s)	75, 121, 455, 573, 833, 860
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	8 cut(s)	248, 260, 593, 656, 773, 800, 824, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1031
HpyF3I	CTNAG	2 cut(s)	858, 894
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	248, 959
Kzo9I	GATC	4 cut(s)	38, 496, 662, 754
LmnI	GCTCC	5 cut(s)	347, 694, 808, 940, 993
Lsp1109I	GCAGC	3 cut(s)	784, 823, 1018
LweI	GCATC	6 cut(s)	314, 580, 703, 760, 880, 1012
MaeI	CTAG	6 cut(s)	8, 543, 666, 752, 1014, 1035
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	214, 869
MalI	GATC	4 cut(s)	40, 498, 664, 756
MboI	GATC	4 cut(s)	38, 496, 662, 754
MboII	GAAGA	2 cut(s)	332, 547
MfeI	CAATTG	3 cut(s)	255, 614, 758
MflI	RGATCY	2 cut(s)	38, 662
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	9 cut(s)	28, 48, 171, 255, 280, 614, 758, 910, 978
MmeI	TCCRAC	2 cut(s)	129, 981
MseI	TTAA	5 cut(s)	18, 47, 719, 741, 803
MspA1I	CMGCKG	1 cut(s)	814
MspI	CCGG	3 cut(s)	167, 941, 985
MspR9I	CCNGG	3 cut(s)	167, 443, 985
MunI	CAATTG	3 cut(s)	255, 614, 758
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	1031
NciI	CCSGG	2 cut(s)	167, 985
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	4 cut(s)	38, 496, 662, 754
NlaIII	CATG	2 cut(s)	248, 959
NlaIV	GGNNCC	2 cut(s)	290, 989
NmuCI	GTSAC	1 cut(s)	869
NspI	RCATGY	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	318
PaeI	GCATGC	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	650, 1004
PkrI	GCNGC	3 cut(s)	799, 813, 1033
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	2 cut(s)	290, 989
PspPI	GGNCC	3 cut(s)	205, 445, 736
PspXI	VCTCGAGB	1 cut(s)	363
PsuI	RGATCY	2 cut(s)	38, 662
PvuII	CAGCTG	1 cut(s)	814
RsaI	GTAC	2 cut(s)	252, 510
RsaNI	GTAC	2 cut(s)	251, 509
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	5 cut(s)	18, 47, 719, 741, 803
SatI	GCNGC	3 cut(s)	798, 812, 1032
Sau3AI	GATC	4 cut(s)	38, 496, 662, 754
Sau96I	GGNCC	3 cut(s)	205, 445, 736
ScrFI	CCNGG	3 cut(s)	167, 443, 985
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	6 cut(s)	314, 580, 703, 760, 880, 1012
Sfr274I	CTCGAG	1 cut(s)	363
SfuI	TTCGAA	1 cut(s)	318
SinI	GGWCC	3 cut(s)	205, 445, 736
SlaI	CTCGAG	1 cut(s)	363
SmlI	CTYRAG	2 cut(s)	299, 363
SmoI	CTYRAG	2 cut(s)	299, 363
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	9 cut(s)	28, 48, 171, 255, 280, 614, 758, 910, 978
SsiI	CCGC	4 cut(s)	71, 117, 345, 938
SspMI	CTAG	6 cut(s)	8, 543, 666, 752, 1014, 1035
StyD4I	CCNGG	3 cut(s)	165, 441, 983
StyI	CCWWGG	1 cut(s)	273
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	4 cut(s)	87, 192, 318, 364
TasI	AATT	9 cut(s)	28, 48, 171, 255, 280, 614, 758, 910, 978
TfiI	GAWTC	2 cut(s)	650, 1004
Tru1I	TTAA	5 cut(s)	18, 47, 719, 741, 803
Tru9I	TTAA	5 cut(s)	18, 47, 719, 741, 803
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	3 cut(s)	797, 811, 1031
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	4 cut(s)	474, 621, 716, 972
VpaK11BI	GGWCC	3 cut(s)	205, 445, 736
XapI	RAATTY	2 cut(s)	171, 280
XbaI	TCTAGA	1 cut(s)	7
XceI	RCATGY	1 cut(s)	248
XhoI	CTCGAG	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	6 cut(s)	8, 543, 666, 752, 1014, 1035
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.