Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

2317929 .. 2320176

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACCCAGACACGTATCAGCAGCACATGCCCACAGGTGTCCATACGAACCTGGGGCAATACAGTGTTTTTACCGGTTGAATGTACAGTGCTGGAGTTGGGTTTTTCATTAGTTTATTTGAGATTTCTTGGGACTGTGTTTGTTGGTGATGAGCTTGTTGCTGAAGAAAGATTTGAGTTAGTTGAATTGGTGGTTGAGGATGATTTGACAGGTGGAGCTGATGGAAACTCTCGAGCAGACCACCACACGCAAGGGGAAAAGGGGTCTGAGAGCTTACGATCTGCTGTACCTATTGGTTCTCTCTATGAGAACATCGGAACTAGCACAGCTATTTTCTCTCCTTCTGCTGGTGAAAGGTTGCCTTTTGATGCAATGGCTCTGGATGAAAAGCAGTTGAAACGAGAGAAAAGAAAACAGGCCAACAGAGAATCTGCAAGGAGATCTAGGATGAGGAAGCAGACTGAATATGAGGAGCTGGTCAAAAGTTGTGATTCTTTAAGCACAGAACAGATGGACCTTAAATCTGAACTAGATCAAGTGAAAGTGGCAGCGGAAAAACTGAGGCTTGAAAATGCTGCATTAAAGGAGCAGCTGAAAAACGCACAGATACTGCAGGAAGGAGGGAATGGTTCCCCTAAGACTGAAGGCAACGTCACCCTGCCAAATGATGGTAAGGACATACTTAGCAATTTGGGTACCGTAAACAGTAACGCTCAGCTGGACTGCGAGACACATGAAACTTCTAACTCTGAAACAATTACCCGGCTCAATCAGTTGTTGGAATCAAGTTCTAGGACTGACGCTGTTGCTGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

273

Amino Acids

29.94

Weight (kDa)

4.97

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	129 - 191	5.4e-15	bZIP transcription factor
bZIP_2	PF07716	133 - 181	3.6e-06	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	695
AccB1I	GGYRCC	1 cut(s)	695
AccB7I	CCANNNNNTGG	1 cut(s)	668
AciI	CCGC	1 cut(s)	551
AcuI	CTGAAG	2 cut(s)	183, 663
AfaI	GTAC	3 cut(s)	85, 288, 697
AfiI	CCNNNNNNNGG	2 cut(s)	347, 668
AflIII	ACRYGT	1 cut(s)	11
AgeI	ACCGGT	1 cut(s)	73
AgsI	TTSAA	4 cut(s)	80, 185, 397, 569
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	7 cut(s)	154, 218, 273, 329, 475, 592, 718
AluI	AGCT	7 cut(s)	154, 218, 273, 329, 475, 592, 718
Alw26I	GTCTC	1 cut(s)	722
AlwNI	CAGNNNCTG	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	5 cut(s)	21, 548, 575, 589, 809
AsiGI	ACCGGT	1 cut(s)	73
Asp718I	GGTACC	1 cut(s)	695
AspS9I	GGNCC	1 cut(s)	514
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	3 cut(s)	158, 362, 646
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	695
BbvI	GCAGC	5 cut(s)	33, 560, 562, 601, 796
BccI	CCATC	3 cut(s)	215, 505, 662
BciT130I	CCWGG	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	1 cut(s)	722
BfaI	CTAG	5 cut(s)	321, 444, 530, 792, 813
BfmI	CTRYAG	1 cut(s)	611
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	5 cut(s)	22, 549, 576, 590, 810
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	5 cut(s)	23, 550, 577, 591, 811
Bme1390I	CCNGG	2 cut(s)	52, 763
Bme18I	GGWCC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	2 cut(s)	631, 697
BmrFI	CCNGG	2 cut(s)	52, 763
BmsI	GCATC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	763
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 668
Bse118I	RCCGGY	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	3 cut(s)	205, 388, 453
BseLI	CCNNNNNNNGG	2 cut(s)	347, 668
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	258, 551, 728
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	5 cut(s)	33, 560, 562, 601, 796
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	695
BshTI	ACCGGT	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	74, 763
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	347, 668
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	419
BsoBI	CYCGRG	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	278, 440, 532
Bsp1720I	GCTNAGC	1 cut(s)	714
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	3 cut(s)	259, 552, 727
BspLI	GGNNCC	2 cut(s)	631, 697
BspMAI	CTGCAG	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	3 cut(s)	278, 440, 532
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	5 cut(s)	64, 88, 136, 700, 707
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	14
BstDEI	CTNAG	5 cut(s)	267, 560, 636, 683, 714
BstF5I	GGATG	3 cut(s)	205, 388, 453
BstKTI	GATC	3 cut(s)	281, 443, 535
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	3 cut(s)	278, 440, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 809
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	50, 761
BstSFI	CTRYAG	1 cut(s)	611
BstV1I	GCAGC	5 cut(s)	33, 560, 562, 601, 796
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	205, 388, 453
BtsIMutI	CAGTG	2 cut(s)	69, 93
CaiI	CAGNNNCTG	1 cut(s)	610
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	514
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	3 cut(s)	84, 287, 696
CspAI	ACCGGT	1 cut(s)	73
CviAII	CATG	2 cut(s)	27, 734
CviQI	GTAC	3 cut(s)	84, 287, 696
DdeI	CTNAG	5 cut(s)	267, 560, 636, 683, 714
DpnI	GATC	3 cut(s)	280, 442, 534
DpnII	GATC	3 cut(s)	278, 440, 532
Eco47I	GGWCC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	183, 663
Eco88I	CYCGRG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	50
FaeI	CATG	2 cut(s)	30, 737
FaiI	YATR	6 cut(s)	28, 44, 306, 468, 680, 735
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	2 cut(s)	26, 733
Fnu4HI	GCNGC	5 cut(s)	22, 549, 576, 590, 810
FokI	GGATG	3 cut(s)	212, 395, 460
Fsp4HI	GCNGC	5 cut(s)	22, 549, 576, 590, 810
FspBI	CTAG	5 cut(s)	321, 444, 530, 792, 813
GluI	GCNGC	5 cut(s)	22, 549, 576, 590, 810
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	2 cut(s)	74, 763
HgaI	GACGC	1 cut(s)	809
Hin1II	CATG	2 cut(s)	30, 737
HinfI	GANTC	3 cut(s)	428, 491, 782
HpaII	CCGG	2 cut(s)	74, 763
HphI	GGTGA	3 cut(s)	158, 362, 646
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	4 cut(s)	268, 317, 526, 751
Hpy188III	TCNNGA	2 cut(s)	231, 380
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	3 cut(s)	351, 611, 638
HpyCH4III	ACNGT	5 cut(s)	64, 88, 136, 700, 707
HpyCH4IV	ACGT	2 cut(s)	13, 651
HpyCH4V	TGCA	4 cut(s)	371, 434, 578, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 809
HpyF3I	CTNAG	5 cut(s)	267, 560, 636, 683, 714
HpySE526I	ACGT	2 cut(s)	13, 651
Hsp92II	CATG	2 cut(s)	30, 737
KpnI	GGTACC	1 cut(s)	699
Kzo9I	GATC	3 cut(s)	278, 440, 532
LmnI	GCTCC	3 cut(s)	215, 472, 586
Lsp1109I	GCAGC	5 cut(s)	33, 560, 562, 601, 796
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	5 cut(s)	321, 444, 530, 792, 813
MaeII	ACGT	2 cut(s)	13, 651
MaeIII	GTNAC	2 cut(s)	652, 707
MalI	GATC	3 cut(s)	280, 442, 534
MboI	GATC	3 cut(s)	278, 440, 532
MboII	GAAGA	1 cut(s)	176
MflI	RGATCY	1 cut(s)	440
MluCI	AATT	3 cut(s)	185, 688, 756
MmeI	TCCRAC	1 cut(s)	759
MnlI	CCTC	5 cut(s)	190, 444, 463, 555, 614
MseI	TTAA	3 cut(s)	497, 519, 581
MspA1I	CMGCKG	3 cut(s)	551, 592, 718
MspI	CCGG	2 cut(s)	74, 763
MspR9I	CCNGG	2 cut(s)	52, 763
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	27, 809
NciI	CCSGG	1 cut(s)	763
NdeII	GATC	3 cut(s)	278, 440, 532
NlaIII	CATG	2 cut(s)	30, 737
NlaIV	GGNNCC	2 cut(s)	631, 697
NmuCI	GTSAC	1 cut(s)	652
NspI	RCATGY	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	428, 491, 782
PflMI	CCANNNNNTGG	1 cut(s)	668
PinAI	ACCGGT	1 cut(s)	73
PkrI	GCNGC	5 cut(s)	23, 550, 577, 591, 811
Ppu21I	YACGTR	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	631, 697
PspPI	GGNCC	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	615
PstNI	CAGNNNCTG	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	440
PvuII	CAGCTG	2 cut(s)	592, 718
RsaI	GTAC	3 cut(s)	85, 288, 697
RsaNI	GTAC	3 cut(s)	84, 287, 696
SaqAI	TTAA	3 cut(s)	497, 519, 581
SatI	GCNGC	5 cut(s)	22, 549, 576, 590, 810
Sau3AI	GATC	3 cut(s)	278, 440, 532
Sau96I	GGNCC	1 cut(s)	514
ScrFI	CCNGG	2 cut(s)	52, 763
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	611
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	514
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	3 cut(s)	185, 688, 756
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	5 cut(s)	321, 444, 530, 792, 813
StyD4I	CCNGG	2 cut(s)	50, 761
TaaI	ACNGT	5 cut(s)	64, 88, 136, 700, 707
TaiI	ACGT	2 cut(s)	16, 654
TaqI	TCGA	1 cut(s)	232
TasI	AATT	3 cut(s)	185, 688, 756
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	428, 491, 782
Tru1I	TTAA	3 cut(s)	497, 519, 581
Tru9I	TTAA	3 cut(s)	497, 519, 581
TscAI	CASTG	2 cut(s)	69, 93
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	5 cut(s)	21, 548, 575, 589, 809
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	3 cut(s)	96, 399, 750
TspRI	CASTG	2 cut(s)	69, 93
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	514
XceI	RCATGY	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	231
XspI	CTAG	5 cut(s)	321, 444, 530, 792, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.