Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010418.1

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Reverse (-)

27926 .. 30850

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010418.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atggctgaaaagaagggagccacattgatcaccaatcacgttatttcagtttcaaccttcaccgccgttatcccctgtcgacatctcaccactgaatccaacaccttccccgcctcttttacgacgtcgttctcctccacaagaaaaccccctcctttgtccccggaaatttccaaacccagttttttcgagggcaatatggaccaagatgtaacaaagaagttcaagggattggatgggcatgcagtaccaattgcatatgtaagttccaagggaaattctgggcacccagttcttgaggcatccaagagtttcgaagagaataaggatggtttgacaggcggagctgatggaaacactcgagcagaccaccacaggcgagggaaaaatgggtcttacagcgtgccaacttctgataatgatgtgaaagaccatccccaggtccatccaaacaatgaaggggaaataaataggaacttcgcaacctctaatgatcttgtgcgagtacctattcgttctccctatgagaaaatcgcaactagcacacctttcttctctccttctgctggtgaaaggttgccttttgatgcaatggttctggatgacaagcaattgaaacgagagaaaagaaaacaggctaacagagaatctgcaaggagatctaggatgaggaagcaagctgaatacgaggagctggtgaaaagttgtgattctttaagcacagaacagatggaccttaaatctgaactagatcgattgaaagtggatgcagaaaaaatgaggcttgaaaatgctgcattaagggagcagctgaaaaatgcacaggtaatgcaggaaggagggaacgcttcccctaagactgaaggtgtcttcaccctgccaaatgatgctaagaacatacttagcaatttgggttctgtaagcagcaatgctccgccggattgtgagacacatgaaacttctgtttctgaaacagttacccggctccatcagttgttggaatcaagctctaggactgatgctgttgctgctagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

345

Amino Acids

37.94

Weight (kDa)

7.17

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	79
AciI	CCGC	4 cut(s)	63, 111, 342, 935
AcsI	RAATTY	2 cut(s)	168, 277
AcuI	CTGAAG	1 cut(s)	882
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	2 cut(s)	249, 507
AfiI	CCNNNNNNNGG	2 cut(s)	439, 566
AgsI	TTSAA	5 cut(s)	54, 226, 616, 760, 788
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	5 cut(s)	347, 680, 694, 811, 1008
AluI	AGCT	5 cut(s)	347, 680, 694, 811, 1008
Alw26I	GTCTC	1 cut(s)	941
Ama87I	CYCGRG	1 cut(s)	360
ApeKI	GCWGC	4 cut(s)	794, 808, 924, 1028
ApoI	RAATTY	2 cut(s)	168, 277
AspS9I	GGNCC	3 cut(s)	202, 442, 733
AsuC2I	CCSGG	2 cut(s)	164, 982
AsuHPI	GGTGA	6 cut(s)	22, 52, 79, 581, 709, 865
AsuII	TTCGAA	1 cut(s)	315
AvaI	CYCGRG	1 cut(s)	360
AvaII	GGWCC	3 cut(s)	202, 442, 733
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	862
BbvI	GCAGC	4 cut(s)	781, 820, 936, 1015
BccI	CCATC	7 cut(s)	230, 323, 344, 441, 453, 724, 996
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	440
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	2 cut(s)	164, 982
BcoDI	GTCTC	1 cut(s)	941
BfaI	CTAG	5 cut(s)	540, 663, 749, 1011, 1032
BglII	AGATCT	1 cut(s)	659
BisI	GCNGC	4 cut(s)	795, 809, 925, 1029
BlsI	GCNGC	4 cut(s)	796, 810, 926, 1030
Bme1390I	CCNGG	3 cut(s)	164, 440, 982
Bme18I	GGWCC	3 cut(s)	202, 442, 733
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	3 cut(s)	202, 442, 733
BmiI	GGNNCC	3 cut(s)	19, 287, 986
BmrFI	CCNGG	3 cut(s)	164, 440, 982
BmrI	ACTGGG	2 cut(s)	174, 284
BmsI	GCATC	5 cut(s)	311, 577, 757, 877, 1009
BmuI	ACTGGG	2 cut(s)	174, 284
BpiI	GAAGAC	1 cut(s)	862
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	2 cut(s)	164, 982
Bsa29I	ATCGAT	1 cut(s)	754
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	162, 270, 438
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 566
Bse1I	ACTGG	2 cut(s)	180, 290
Bse3DI	GCAATG	2 cut(s)	597, 934
BseBI	CCWGG	1 cut(s)	440
BseCI	ATCGAT	1 cut(s)	754
BseDI	CCNNGG	3 cut(s)	162, 270, 438
BseGI	GGATG	8 cut(s)	241, 302, 334, 433, 445, 607, 672, 772
BseLI	CCNNNNNNNGG	2 cut(s)	439, 566
BseMI	GCAATG	2 cut(s)	597, 934
BseNI	ACTGG	2 cut(s)	180, 290
BseRI	GAGGAG	2 cut(s)	124, 704
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	4 cut(s)	781, 820, 936, 1015
BshNI	GGYRCC	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	164, 938, 982
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	439, 566
BsmAI	GTCTC	1 cut(s)	941
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	360
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	27, 493, 659, 751
BspACI	CCGC	4 cut(s)	63, 111, 342, 935
BspDI	ATCGAT	1 cut(s)	754
BspLI	GGNNCC	3 cut(s)	19, 287, 986
BspT104I	TTCGAA	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	285
BsrDI	GCAATG	2 cut(s)	597, 934
BsrI	ACTGG	2 cut(s)	180, 290
BssECI	CCNNGG	3 cut(s)	162, 270, 438
BssMI	GATC	4 cut(s)	27, 493, 659, 751
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	976
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	125
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	3 cut(s)	243, 404, 678
BstDEI	CTNAG	3 cut(s)	855, 891, 902
BstF5I	GGATG	8 cut(s)	241, 302, 334, 433, 445, 607, 672, 772
BstKTI	GATC	4 cut(s)	30, 496, 662, 754
BstMAI	GTCTC	1 cut(s)	941
BstMBI	GATC	4 cut(s)	27, 493, 659, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	1028
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	162, 438, 980
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	781, 820, 936, 1015
BstV2I	GAAGAC	1 cut(s)	862
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
Bsu15I	ATCGAT	1 cut(s)	754
BsuTUI	ATCGAT	1 cut(s)	754
BtsCI	GGATG	8 cut(s)	241, 302, 334, 433, 445, 607, 672, 772
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	243, 404, 678
Cfr13I	GGNCC	3 cut(s)	202, 442, 733
ClaI	ATCGAT	1 cut(s)	754
Csp6I	GTAC	2 cut(s)	248, 506
CviAII	CATG	2 cut(s)	242, 953
CviQI	GTAC	2 cut(s)	248, 506
DdeI	CTNAG	3 cut(s)	855, 891, 902
DpnI	GATC	4 cut(s)	29, 495, 661, 753
DpnII	GATC	4 cut(s)	27, 493, 659, 751
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	2 cut(s)	357, 924
Eco130I	CCWWGG	1 cut(s)	270
Eco47I	GGWCC	3 cut(s)	202, 442, 733
Eco57I	CTGAAG	1 cut(s)	882
Eco88I	CYCGRG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	245, 956
FaiI	YATR	7 cut(s)	200, 243, 259, 261, 525, 899, 954
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	2 cut(s)	241, 952
FauI	CCCGC	1 cut(s)	118
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	4 cut(s)	795, 809, 925, 1029
FokI	GGATG	8 cut(s)	248, 289, 341, 420, 432, 614, 679, 779
Fsp4HI	GCNGC	4 cut(s)	795, 809, 925, 1029
FspBI	CTAG	5 cut(s)	540, 663, 749, 1011, 1032
GluI	GCNGC	4 cut(s)	795, 809, 925, 1029
HapII	CCGG	3 cut(s)	164, 938, 982
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	245, 956
HincII	GTYRAC	1 cut(s)	80
HindII	GTYRAC	1 cut(s)	80
HinfI	GANTC	4 cut(s)	95, 647, 710, 1001
HpaII	CCGG	3 cut(s)	164, 938, 982
HphI	GGTGA	6 cut(s)	22, 52, 79, 581, 709, 865
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	3 cut(s)	415, 745, 970
Hpy188III	TCNNGA	2 cut(s)	296, 599
Hpy8I	GTNNAC	1 cut(s)	80
Hpy99I	CGWCG	2 cut(s)	127, 130
HpyAV	CCTTC	7 cut(s)	7, 67, 115, 452, 570, 830, 857
HpyCH4III	ACNGT	1 cut(s)	976
HpyCH4IV	ACGT	2 cut(s)	39, 125
HpyCH4V	TGCA	8 cut(s)	245, 257, 590, 653, 770, 797, 821, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1028
HpyF3I	CTNAG	3 cut(s)	855, 891, 902
HpySE526I	ACGT	2 cut(s)	39, 125
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	245, 956
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	27, 493, 659, 751
LmnI	GCTCC	6 cut(s)	17, 344, 691, 805, 937, 990
Lsp1109I	GCAGC	4 cut(s)	781, 820, 936, 1015
LweI	GCATC	5 cut(s)	311, 577, 757, 877, 1009
MaeI	CTAG	5 cut(s)	540, 663, 749, 1011, 1032
MaeII	ACGT	2 cut(s)	39, 125
MaeIII	GTNAC	2 cut(s)	211, 976
MalI	GATC	4 cut(s)	29, 495, 661, 753
MboI	GATC	4 cut(s)	27, 493, 659, 751
MboII	GAAGA	3 cut(s)	329, 544, 862
MfeI	CAATTG	2 cut(s)	252, 611
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	5 cut(s)	168, 252, 277, 611, 907
MmeI	TCCRAC	2 cut(s)	123, 978
MseI	TTAA	3 cut(s)	716, 738, 800
MspA1I	CMGCKG	1 cut(s)	811
MspI	CCGG	3 cut(s)	164, 938, 982
MspR9I	CCNGG	3 cut(s)	164, 440, 982
MunI	CAATTG	2 cut(s)	252, 611
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	1028
NciI	CCSGG	2 cut(s)	164, 982
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	4 cut(s)	27, 493, 659, 751
NlaIII	CATG	2 cut(s)	245, 956
NlaIV	GGNNCC	3 cut(s)	19, 287, 986
NspI	RCATGY	1 cut(s)	245
NspV	TTCGAA	1 cut(s)	315
PaeI	GCATGC	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	360
PfeI	GAWTC	4 cut(s)	95, 647, 710, 1001
PkrI	GCNGC	4 cut(s)	796, 810, 926, 1030
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	3 cut(s)	19, 287, 986
PspPI	GGNCC	3 cut(s)	202, 442, 733
PspXI	VCTCGAGB	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	659
PvuII	CAGCTG	1 cut(s)	811
RsaI	GTAC	2 cut(s)	249, 507
RsaNI	GTAC	2 cut(s)	248, 506
SalI	GTCGAC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	716, 738, 800
SatI	GCNGC	4 cut(s)	795, 809, 925, 1029
Sau3AI	GATC	4 cut(s)	27, 493, 659, 751
Sau96I	GGNCC	3 cut(s)	202, 442, 733
ScrFI	CCNGG	3 cut(s)	164, 440, 982
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	5 cut(s)	311, 577, 757, 877, 1009
Sfr274I	CTCGAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	3 cut(s)	202, 442, 733
SlaI	CTCGAG	1 cut(s)	360
SmlI	CTYRAG	2 cut(s)	296, 360
SmoI	CTYRAG	2 cut(s)	296, 360
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	5 cut(s)	168, 252, 277, 611, 907
SsiI	CCGC	4 cut(s)	63, 111, 342, 935
SspMI	CTAG	5 cut(s)	540, 663, 749, 1011, 1032
StyD4I	CCNGG	3 cut(s)	162, 438, 980
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	976
TaiI	ACGT	2 cut(s)	42, 128
TaqI	TCGA	5 cut(s)	79, 189, 315, 361, 754
TasI	AATT	5 cut(s)	168, 252, 277, 611, 907
TfiI	GAWTC	4 cut(s)	95, 647, 710, 1001
Tru1I	TTAA	3 cut(s)	716, 738, 800
Tru9I	TTAA	3 cut(s)	716, 738, 800
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	4 cut(s)	794, 808, 924, 1028
TspDTI	ATGAA	2 cut(s)	471, 969
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	3 cut(s)	202, 442, 733
XapI	RAATTY	2 cut(s)	168, 277
XceI	RCATGY	1 cut(s)	245
XhoI	CTCGAG	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	79
XspI	CTAG	5 cut(s)	540, 663, 749, 1011, 1032
ZraI	GACGTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.