Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

11695897 .. 11699931

Gene Structure 4035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G113500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGACCAAGATGTGAAAAAGAAGTTGAAGGGATTGGATGGAACTGCAGTGCCAGTTGGGTACGACAGTCTCAAGGATACCGGACACCCAGTCCTTGAGGCATCAAAAAGTTTGGAACAAAATATTGATGGTTTGACAGATGGCAGTGATGGCAACACTAAAGAAGACAACCACCACACTCAAAGGAACAATGGGTCTGGAAGCATGCGATTTGCTGATAATGATGTGAAAGTCCATACTCAGGTCAGGCCTACAACTAATGGGGAAGTGAATGAGAATTCCACAAATGCTTCTGGTACTGGATCTCCTGCTGGTTTTTTGGGAGTATCTCTTCGTTCCCCATATGAGAAAATAGGAATTAGCACAGCTTTTGTTGCTCCTTCCGCTGGTGCAGGGTTGCCTTTTGATGCAATGGTTCTGGATGAAAGGCAGGTCAAACGAGAGAAAAGGAAGCAGGCTAACAGAGAATCTGCAAGGAGATCTAGGATGAGGAAGCAGGCTGAATATGAGGAACTGGTGAGGACATTTGAATCGTTAAACACAGAGAAAATGGCCCTTAAATCTAAACTAGAAGAACTGAAAGGGGATTCAGAGAAATTGAGGCTTGAAAATGCCACATTAATGGAGAAGCTGAAACATGCACAGGTAGTGCCGAAAGGAGGGATTGCTTCAGTCGAGATTGAAGTAGACTTGGACCTGCCAACTGGTACTGAGAACATACTTAGCAATTTGGGTTCTGTAAGCAGGAATGCTCAGCTGGATTGTGAGGCACATGAAAGTTCTATGTCTGAAACCAAGCTCCATGCTGTTGCTGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

274

Amino Acids

29.69

Weight (kDa)

6.03

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	421, 705
AccI	GTMKAC	1 cut(s)	687
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	3 cut(s)	62, 298, 709
AfiI	CCNNNNNNNGG	3 cut(s)	241, 386, 659
AgsI	TTSAA	4 cut(s)	28, 530, 608, 683
AhdI	GACNNNNNGTC	1 cut(s)	89
AluBI	AGCT	4 cut(s)	368, 631, 757, 799
AluI	AGCT	4 cut(s)	368, 631, 757, 799
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	310
AoxI	GGCC	2 cut(s)	248, 552
ApeKI	GCWGC	1 cut(s)	812
ApoI	RAATTY	1 cut(s)	277
AseI	ATTAAT	1 cut(s)	620
AspS9I	GGNCC	3 cut(s)	4, 553, 694
AsuHPI	GGTGA	1 cut(s)	529
AvaII	GGWCC	2 cut(s)	4, 694
BaeI	ACNNNNGTAYC	2 cut(s)	52, 85
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	799
BccI	CCATC	4 cut(s)	32, 122, 134, 143
BciVI	GTATCC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	3 cut(s)	483, 569, 816
BfmI	CTRYAG	1 cut(s)	45
BfuAI	ACCTGC	2 cut(s)	421, 705
BfuI	GTATCC	1 cut(s)	70
BglII	AGATCT	1 cut(s)	479
BisI	GCNGC	1 cut(s)	813
BlpI	GCTNAGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	814
Bme18I	GGWCC	2 cut(s)	4, 694
BmeRI	GACNNNNNGTC	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	4, 553, 694
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	110, 397
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	2 cut(s)	56, 116
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 386, 659
Bse1I	ACTGG	5 cut(s)	53, 89, 304, 519, 709
Bse3DI	GCAATG	1 cut(s)	417
BseGI	GGATG	3 cut(s)	43, 427, 492
BseLI	CCNNNNNNNGG	3 cut(s)	241, 386, 659
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	3 cut(s)	254, 702, 767
BseNI	ACTGG	5 cut(s)	53, 89, 304, 519, 709
BseXI	GCAGC	1 cut(s)	799
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	250, 554
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	241, 386, 659
BsmAI	GTCTC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	2 cut(s)	250, 554
Bsp143I	GATC	2 cut(s)	302, 479
Bsp1720I	GCTNAGC	1 cut(s)	753
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	2 cut(s)	250, 554
BspCNI	CTCAG	3 cut(s)	253, 703, 766
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	2 cut(s)	421, 705
BspPI	GGATC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	5 cut(s)	53, 89, 304, 519, 709
BssMI	GATC	2 cut(s)	302, 479
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	206, 456, 498
BstDEI	CTNAG	4 cut(s)	240, 711, 722, 753
BstF5I	GGATG	3 cut(s)	43, 427, 492
BstKTI	GATC	2 cut(s)	305, 482
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	302, 479
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 374, 383, 812
BstNSI	RCATGY	2 cut(s)	208, 641
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	799
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	302, 479
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstYI	RGATCY	2 cut(s)	302, 479
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	250, 554
BtsCI	GGATG	3 cut(s)	43, 427, 492
BtsI	GCAGTG	2 cut(s)	54, 151
BtsIMutI	CAGTG	2 cut(s)	54, 151
BveI	ACCTGC	2 cut(s)	421, 705
Cac8I	GCNNGC	3 cut(s)	206, 456, 498
Cfr13I	GGNCC	3 cut(s)	4, 553, 694
Csp6I	GTAC	3 cut(s)	61, 297, 708
CviAII	CATG	4 cut(s)	205, 638, 773, 803
CviJI	RGCY	9 cut(s)	250, 368, 458, 500, 554, 604, 631, 757, 799
CviKI_1	RGCY	9 cut(s)	250, 368, 458, 500, 554, 604, 631, 757, 799
CviQI	GTAC	3 cut(s)	61, 297, 708
DdeI	CTNAG	4 cut(s)	240, 711, 722, 753
DpnI	GATC	2 cut(s)	304, 481
DpnII	GATC	2 cut(s)	302, 479
DriI	GACNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	4, 694
Eco57I	CTGAAG	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	277
FaeI	CATG	4 cut(s)	208, 641, 776, 806
FatI	CATG	4 cut(s)	204, 637, 772, 802
FauNDI	CATATG	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	1 cut(s)	813
FokI	GGATG	3 cut(s)	50, 434, 499
Fsp4HI	GCNGC	1 cut(s)	813
FspBI	CTAG	3 cut(s)	483, 569, 816
GluI	GCNGC	1 cut(s)	813
HaeIII	GGCC	2 cut(s)	250, 554
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	4 cut(s)	208, 641, 776, 806
HinfI	GANTC	3 cut(s)	467, 530, 587
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	529
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	2 cut(s)	592, 790
Hpy188III	TCNNGA	3 cut(s)	198, 419, 676
Hpy8I	GTNNAC	1 cut(s)	688
HpyAV	CCTTC	2 cut(s)	22, 390
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	47, 392, 410, 473, 641
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 374, 383, 812
HpyF3I	CTNAG	4 cut(s)	240, 711, 722, 753
Hsp92II	CATG	4 cut(s)	208, 641, 776, 806
Kzo9I	GATC	2 cut(s)	302, 479
LmnI	GCTCC	2 cut(s)	382, 804
Lsp1109I	GCAGC	1 cut(s)	799
LweI	GCATC	2 cut(s)	110, 397
MaeI	CTAG	3 cut(s)	483, 569, 816
MalI	GATC	2 cut(s)	304, 481
MboI	GATC	2 cut(s)	302, 479
MboII	GAAGA	3 cut(s)	176, 323, 584
MflI	RGATCY	2 cut(s)	302, 479
MluCI	AATT	4 cut(s)	277, 357, 596, 727
MnlI	CCTC	7 cut(s)	91, 483, 502, 513, 594, 653, 760
MseI	TTAA	3 cut(s)	536, 558, 620
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	2 cut(s)	386, 757
MspI	CCGG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	754
MwoI	GCNNNNNNNGC	4 cut(s)	150, 374, 383, 812
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	2 cut(s)	302, 479
NlaIII	CATG	4 cut(s)	208, 641, 776, 806
NspI	RCATGY	2 cut(s)	208, 641
PaeI	GCATGC	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	3 cut(s)	467, 530, 587
PkrI	GCNGC	1 cut(s)	814
PshBI	ATTAAT	1 cut(s)	620
PspPI	GGNCC	3 cut(s)	4, 553, 694
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	302, 479
PvuII	CAGCTG	1 cut(s)	757
RsaI	GTAC	3 cut(s)	62, 298, 709
RsaNI	GTAC	3 cut(s)	61, 297, 708
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	3 cut(s)	536, 558, 620
SatI	GCNGC	1 cut(s)	813
Sau3AI	GATC	2 cut(s)	302, 479
Sau96I	GGNCC	3 cut(s)	4, 553, 694
SetI	ASST	8 cut(s)	246, 370, 435, 633, 648, 699, 759, 801
SfaNI	GCATC	2 cut(s)	110, 397
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	2 cut(s)	4, 694
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	2 cut(s)	71, 95
SmoI	CTYRAG	2 cut(s)	71, 95
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	4 cut(s)	277, 357, 596, 727
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	384
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	3 cut(s)	483, 569, 816
StuI	AGGCCT	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	675
TasI	AATT	4 cut(s)	277, 357, 596, 727
TfiI	GAWTC	3 cut(s)	467, 530, 587
Tru1I	TTAA	3 cut(s)	536, 558, 620
Tru9I	TTAA	3 cut(s)	536, 558, 620
TscAI	CASTG	2 cut(s)	54, 151
TseI	GCWGC	1 cut(s)	812
TspDTI	ATGAA	2 cut(s)	438, 789
TspRI	CASTG	2 cut(s)	54, 151
VpaK11BI	GGWCC	2 cut(s)	4, 694
VspI	ATTAAT	1 cut(s)	620
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	2 cut(s)	208, 641
XmiI	GTMKAC	1 cut(s)	687
XspI	CTAG	3 cut(s)	483, 569, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.