Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Forward (+)

14822268 .. 14823705

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTGGACAACATGGACCAAGATGTAACAAAGAAGTTGAAGGGATCGGACGGAACTGCAGTGCCAGTTGGATATGACAGTCCCAAGGACGGGAACCTAGTCCTTGAGGCATCAAAGAGTTTGGAACAAAAGGTTGATGGTTTGACTGATGGAAATGATGGCAACACTAAAGCAGAGCACCTCACTCAGAGGAACAATGGGTCGGAGAGCATGCAATCTGCTGAAAATGATGTGAAGGTTCATACTCAGGTCAGTCCTACAACTAAAGGGGAAACGAATGAGAATTCCAAAAGTGTTTCCGGTACTGCGCCTCCTGCTGTTGGTTATATTGGAGTATCTCTCGGGCCGCCGTATGAGACAGTAGGAATTAGCACAGCTTTTGTTGCTCCTTCTGCTGGTTCTGGGTTTCCTTTTGGTGCACCTGTTCTGGATGAAAGGCAGATGAAACGAGAGAAAAGGAAACAGGCTAACAGAGAATCTGCAAGGATCGATCTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

167

Amino Acids

17.51

Weight (kDa)

5.23

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	52, 494
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	4 cut(s)	89, 90, 320, 395
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw21I	GWGCWC	2 cut(s)	180, 421
Alw26I	GTCTC	1 cut(s)	350
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	2 cut(s)	52, 494
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	344
ApaLI	GTGCAC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	16, 344
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	421
Bbv12I	GWGCWC	2 cut(s)	180, 421
BccI	CCATC	3 cut(s)	131, 143, 152
BceAI	ACGGC	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	98, 494
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	16, 344
BmiI	GGNNCC	1 cut(s)	95
BmsI	GCATC	1 cut(s)	119
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpuEI	CTTGAG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 90, 320, 395
Bse1I	ACTGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	4 cut(s)	89, 90, 320, 395
BseMII	CTCAG	2 cut(s)	200, 260
BseNI	ACTGG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	180, 421
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	4 cut(s)	89, 90, 320, 395
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	180, 421
Bsp143I	GATC	3 cut(s)	44, 486, 490
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	2 cut(s)	199, 259
BspDI	ATCGAT	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	2 cut(s)	52, 494
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	3 cut(s)	44, 486, 490
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	80, 361
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	186, 246
BstF5I	GGATG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	47, 489, 493
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	3 cut(s)	44, 486, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 383, 392
BstNSI	RCATGY	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	346
BsuTUI	ATCGAT	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	16, 344
ClaI	ATCGAT	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	2 cut(s)	13, 211
CviJI	RGCY	3 cut(s)	346, 377, 467
CviKI_1	RGCY	3 cut(s)	346, 377, 467
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	2 cut(s)	186, 246
DpnI	GATC	3 cut(s)	46, 488, 492
DpnII	GATC	3 cut(s)	44, 486, 490
Eco130I	CCWWGG	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	16, 214
FaiI	YATR	6 cut(s)	14, 75, 212, 243, 327, 354
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	12, 210
Fnu4HI	GCNGC	1 cut(s)	347
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	1 cut(s)	347
FspBI	CTAG	2 cut(s)	98, 494
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	300
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	16, 214
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	3 cut(s)	49, 189, 205
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	3 cut(s)	34, 229, 399
HpyCH4III	ACNGT	2 cut(s)	80, 361
HpyCH4V	TGCA	4 cut(s)	59, 214, 419, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 383, 392
HpyF3I	CTNAG	2 cut(s)	186, 246
Hsp92II	CATG	2 cut(s)	16, 214
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	44, 486, 490
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	9 cut(s)	78, 233, 313, 327, 381, 387, 413, 435, 449
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	98, 494
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	46, 488, 492
MboI	GATC	3 cut(s)	44, 486, 490
MhlI	GDGCHC	2 cut(s)	180, 421
MluCI	AATT	2 cut(s)	283, 366
MmeI	TCCRAC	2 cut(s)	49, 183
MnlI	CCTC	4 cut(s)	100, 183, 191, 321
MseI	TTAA	1 cut(s)	499
MspI	CCGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	314, 383, 392
NdeII	GATC	3 cut(s)	44, 486, 490
NlaIII	CATG	2 cut(s)	16, 214
NlaIV	GGNNCC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	214
PaeI	GCATGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	16, 344
PstI	CTGCAG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	1 cut(s)	347
Sau3AI	GATC	3 cut(s)	44, 486, 490
Sau96I	GGNCC	2 cut(s)	16, 344
SduI	GDGCHC	2 cut(s)	180, 421
SetI	ASST	8 cut(s)	99, 135, 183, 240, 252, 379, 424, 499
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SphI	GCATGC	1 cut(s)	214
Sse9I	AATT	2 cut(s)	283, 366
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	2 cut(s)	98, 494
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	80, 361
TaqI	TCGA	1 cut(s)	489
TasI	AATT	2 cut(s)	283, 366
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TscAI	CASTG	1 cut(s)	66
TspDTI	ATGAA	3 cut(s)	230, 447, 458
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	2 cut(s)	98, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.