Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003314.1

Orthogroup ID

OG0006407

Physical Location & Seq

Genomic Coordinates Reverse (-)

29115 .. 32268

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003314.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgttgtattatctgattggggaaactgacgagactctcattggattcccaattagtctggccgaagggagccacattgatcctcctctacaccaatcacgtcatttcagttttcaaccttcaccgacgttatcccctgtcgacatctcaccactgaatccaacaccttccccgcctcttttacgacgtcgttctcctccacaagaaaacctcccccttttgtccccggaaatttccaaacccagttttttcgagggcaatatggaccaagatgtaacaaagaagttcaagggattggatgggcatgcagtaccaattgcatatgtaagttccaagggaaattctgggcacccagttcttgaggcatccaagagtttcgaagagaataaggatggtttgacaggcggagctgatggaaacactcgagcagaccaccacaggcaagggaaaaatgggtcttacagcgtgccaacttctgataatgatgtgaaagaccatccccaggtccatccaaacaatgaaggggaaataaataggaacttcgcaacctctaatgatcttgtgcgagtacctattcgttctccctatgagaaaatcgcaactagcacacctttcttctctccttctgctggtgaaaggttgccttttgatgcaatggttctggatgacaagcaattgaaacgagagaaaagaaaacaggctaacagagaatctgcaaggagatctaggatgaggaagcaagctgaatacgaggagctggtgaaaagttgtgattctttaagcacagaacagatggaccttaaatctgaactagatcaattgaaagtggatgcagaaaaaatgaggcttgaaaatgctgcattaagggagcagctgaaaaatgcacaggtaatgcaggaaggagggaacgcttcccctaagactgaaggtgtcttcaccctgccaaatgatgctaagaacatacttagcaatttgggttctgtaagcagcaatgctccgccggattgtgagacacatgaaacttctgtttctgaaacagttacccggctccatcagttgttggaatcaagctctaggactgatgctgttgctgctagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

366

Amino Acids

40.4

Weight (kDa)

5.82

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03860 FvH4_5g03880
malus_domestica	MD06G1099800.v1.1 MD06G1099900.v1.1 MD14G1119500.v1.1
prunus_persica	Prupe.3G101300_v2.0.a1 Prupe.5G113500_v2.0.a1 Prupe.6G169100_v2.0.a1
pyrus_communis	pycom06g09510 pycom06g09520
rosa_chinensis	RchiOBHm_Chr7g0195651
rosa_laevigata	RLG00000004102
rosa_multiflora	Rmu_sc0003314.1_g000010 Rmu_sc0010418.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260260
rosa_rugosa	Rorug07G0025400
rosa_samantha	Rh7AG152900 Rh7BG154400 Rh7CG158300 Rh7DG153900
rosa_wichuraiana	Rw7G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	3 cut(s)	173, 405, 998
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	231, 340
AcuI	CTGAAG	1 cut(s)	945
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	2 cut(s)	312, 570
AfiI	CCNNNNNNNGG	2 cut(s)	502, 629
AgsI	TTSAA	5 cut(s)	116, 289, 679, 823, 851
AjiI	CACGTC	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	5 cut(s)	410, 743, 757, 874, 1071
AluI	AGCT	5 cut(s)	410, 743, 757, 874, 1071
Alw26I	GTCTC	2 cut(s)	26, 1004
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	4 cut(s)	857, 871, 987, 1091
ApoI	RAATTY	2 cut(s)	231, 340
AspS9I	GGNCC	3 cut(s)	265, 505, 796
AsuC2I	CCSGG	2 cut(s)	227, 1045
AsuHPI	GGTGA	5 cut(s)	114, 141, 644, 772, 928
AsuII	TTCGAA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	3 cut(s)	265, 505, 796
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	925
BbvI	GCAGC	4 cut(s)	844, 883, 999, 1078
BccI	CCATC	7 cut(s)	293, 386, 407, 504, 516, 787, 1059
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	2 cut(s)	227, 1045
BcoDI	GTCTC	2 cut(s)	26, 1004
BfaI	CTAG	5 cut(s)	603, 726, 812, 1074, 1095
BglII	AGATCT	1 cut(s)	722
BisI	GCNGC	4 cut(s)	858, 872, 988, 1092
BlsI	GCNGC	4 cut(s)	859, 873, 989, 1093
Bme1390I	CCNGG	3 cut(s)	227, 503, 1045
Bme18I	GGWCC	3 cut(s)	265, 505, 796
BmeT110I	CYCGRG	1 cut(s)	423
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	3 cut(s)	265, 505, 796
BmiI	GGNNCC	3 cut(s)	71, 350, 1049
BmrFI	CCNGG	3 cut(s)	227, 503, 1045
BmrI	ACTGGG	2 cut(s)	237, 347
BmsI	GCATC	5 cut(s)	374, 640, 820, 940, 1072
BmuI	ACTGGG	2 cut(s)	237, 347
BpiI	GAAGAC	1 cut(s)	925
Bpu14I	TTCGAA	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	227, 1045
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	3 cut(s)	225, 333, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 629
Bse1I	ACTGG	2 cut(s)	243, 353
Bse3DI	GCAATG	2 cut(s)	660, 997
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	225, 333, 501
BseGI	GGATG	8 cut(s)	304, 365, 397, 496, 508, 670, 735, 835
BseLI	CCNNNNNNNGG	2 cut(s)	502, 629
BseMI	GCAATG	2 cut(s)	660, 997
BseNI	ACTGG	2 cut(s)	243, 353
BseRI	GAGGAG	3 cut(s)	75, 186, 767
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	4 cut(s)	844, 883, 999, 1078
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	3 cut(s)	227, 1001, 1045
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	502, 629
BsmAI	GTCTC	2 cut(s)	26, 1004
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	423
Bsp119I	TTCGAA	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	79, 556, 722, 814
BspACI	CCGC	3 cut(s)	173, 405, 998
BspANI	GGCC	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	71, 350, 1049
BspPI	GGATC	1 cut(s)	74
BspT104I	TTCGAA	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	348
BsrDI	GCAATG	2 cut(s)	660, 997
BsrI	ACTGG	2 cut(s)	243, 353
BssECI	CCNNGG	3 cut(s)	225, 333, 501
BssMI	GATC	4 cut(s)	79, 556, 722, 814
BssNI	GRCGYC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	1039
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	378
BstC8I	GCNNGC	3 cut(s)	306, 467, 741
BstDEI	CTNAG	3 cut(s)	918, 954, 965
BstF5I	GGATG	8 cut(s)	304, 365, 397, 496, 508, 670, 735, 835
BstKTI	GATC	4 cut(s)	82, 559, 725, 817
BstMAI	GTCTC	2 cut(s)	26, 1004
BstMBI	GATC	4 cut(s)	79, 556, 722, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	1091
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	3 cut(s)	225, 501, 1043
BstSLI	GKGCMC	1 cut(s)	351
BstV1I	GCAGC	4 cut(s)	844, 883, 999, 1078
BstV2I	GAAGAC	1 cut(s)	925
BstX2I	RGATCY	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	722
BsuRI	GGCC	1 cut(s)	62
BtrI	CACGTC	1 cut(s)	101
BtsCI	GGATG	8 cut(s)	304, 365, 397, 496, 508, 670, 735, 835
BtsIMutI	CAGTG	1 cut(s)	152
Cac8I	GCNNGC	3 cut(s)	306, 467, 741
Cfr13I	GGNCC	3 cut(s)	265, 505, 796
Csp6I	GTAC	2 cut(s)	311, 569
CviAII	CATG	2 cut(s)	305, 1016
CviQI	GTAC	2 cut(s)	311, 569
DdeI	CTNAG	3 cut(s)	918, 954, 965
DpnI	GATC	4 cut(s)	81, 558, 724, 816
DpnII	GATC	4 cut(s)	79, 556, 722, 814
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	2 cut(s)	420, 987
Eco130I	CCWWGG	1 cut(s)	333
Eco47I	GGWCC	3 cut(s)	265, 505, 796
Eco57I	CTGAAG	1 cut(s)	945
Eco88I	CYCGRG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	308, 1019
FaiI	YATR	7 cut(s)	263, 306, 322, 324, 588, 962, 1017
FalI	AAGNNNNNCTT	2 cut(s)	628, 660
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	304, 1015
FauI	CCCGC	1 cut(s)	180
FauNDI	CATATG	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	858, 872, 988, 1092
FokI	GGATG	8 cut(s)	311, 352, 404, 483, 495, 677, 742, 842
Fsp4HI	GCNGC	4 cut(s)	858, 872, 988, 1092
FspBI	CTAG	5 cut(s)	603, 726, 812, 1074, 1095
GluI	GCNGC	4 cut(s)	858, 872, 988, 1092
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	3 cut(s)	227, 1001, 1045
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	308, 1019
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	6 cut(s)	34, 45, 157, 710, 773, 1064
HpaII	CCGG	3 cut(s)	227, 1001, 1045
HphI	GGTGA	5 cut(s)	114, 141, 644, 772, 928
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	4 cut(s)	15, 478, 808, 1033
Hpy188III	TCNNGA	2 cut(s)	359, 662
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	3 cut(s)	130, 189, 192
HpyAV	CCTTC	7 cut(s)	59, 129, 177, 515, 633, 893, 920
HpyCH4III	ACNGT	1 cut(s)	1039
HpyCH4IV	ACGT	3 cut(s)	100, 128, 187
HpyCH4V	TGCA	8 cut(s)	308, 320, 653, 716, 833, 860, 884, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1091
HpyF3I	CTNAG	3 cut(s)	918, 954, 965
HpySE526I	ACGT	3 cut(s)	100, 128, 187
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	308, 1019
Kzo9I	GATC	4 cut(s)	79, 556, 722, 814
LmnI	GCTCC	6 cut(s)	69, 407, 754, 868, 1000, 1053
Lsp1109I	GCAGC	4 cut(s)	844, 883, 999, 1078
LweI	GCATC	5 cut(s)	374, 640, 820, 940, 1072
MaeI	CTAG	5 cut(s)	603, 726, 812, 1074, 1095
MaeII	ACGT	3 cut(s)	100, 128, 187
MaeIII	GTNAC	2 cut(s)	274, 1039
MalI	GATC	4 cut(s)	81, 558, 724, 816
MboI	GATC	4 cut(s)	79, 556, 722, 814
MboII	GAAGA	3 cut(s)	392, 607, 925
MfeI	CAATTG	3 cut(s)	315, 674, 818
MflI	RGATCY	1 cut(s)	722
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	7 cut(s)	51, 231, 315, 340, 674, 818, 970
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	2 cut(s)	185, 1041
MseI	TTAA	3 cut(s)	779, 801, 863
MspA1I	CMGCKG	1 cut(s)	874
MspI	CCGG	3 cut(s)	227, 1001, 1045
MspR9I	CCNGG	3 cut(s)	227, 503, 1045
MunI	CAATTG	3 cut(s)	315, 674, 818
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	1091
NciI	CCSGG	2 cut(s)	227, 1045
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	4 cut(s)	79, 556, 722, 814
NlaIII	CATG	2 cut(s)	308, 1019
NlaIV	GGNNCC	3 cut(s)	71, 350, 1049
NspI	RCATGY	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	378
PaeI	GCATGC	1 cut(s)	308
PaeR7I	CTCGAG	1 cut(s)	423
PfeI	GAWTC	5 cut(s)	45, 157, 710, 773, 1064
PkrI	GCNGC	4 cut(s)	859, 873, 989, 1093
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	71, 350, 1049
PspPI	GGNCC	3 cut(s)	265, 505, 796
PspXI	VCTCGAGB	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	722
PvuII	CAGCTG	1 cut(s)	874
RsaI	GTAC	2 cut(s)	312, 570
RsaNI	GTAC	2 cut(s)	311, 569
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	779, 801, 863
SatI	GCNGC	4 cut(s)	858, 872, 988, 1092
Sau3AI	GATC	4 cut(s)	79, 556, 722, 814
Sau96I	GGNCC	3 cut(s)	265, 505, 796
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	227, 503, 1045
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	5 cut(s)	374, 640, 820, 940, 1072
Sfr274I	CTCGAG	1 cut(s)	423
SfuI	TTCGAA	1 cut(s)	378
SinI	GGWCC	3 cut(s)	265, 505, 796
SlaI	CTCGAG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	359, 423
SmoI	CTYRAG	2 cut(s)	359, 423
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	7 cut(s)	51, 231, 315, 340, 674, 818, 970
SsiI	CCGC	3 cut(s)	173, 405, 998
SspMI	CTAG	5 cut(s)	603, 726, 812, 1074, 1095
StyD4I	CCNGG	3 cut(s)	225, 501, 1043
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	1039
TaiI	ACGT	3 cut(s)	103, 131, 190
TaqI	TCGA	4 cut(s)	141, 252, 378, 424
TasI	AATT	7 cut(s)	51, 231, 315, 340, 674, 818, 970
TfiI	GAWTC	5 cut(s)	45, 157, 710, 773, 1064
Tru1I	TTAA	3 cut(s)	779, 801, 863
Tru9I	TTAA	3 cut(s)	779, 801, 863
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	4 cut(s)	857, 871, 987, 1091
TspDTI	ATGAA	2 cut(s)	534, 1032
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	3 cut(s)	265, 505, 796
XapI	RAATTY	2 cut(s)	231, 340
XceI	RCATGY	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	5 cut(s)	603, 726, 812, 1074, 1095
ZraI	GACGTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.